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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1271.1666.1 vs. uniprot
Match: D7FN18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN18_ECTSI) HSP 1 Score: 53.5 bits (127), Expect = 3.540e-6 Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = -1
Query: 1 LSVHRSGVEGLQARVGATSHANPTRGGRYVH 93
L + RSG+EGLQA VG TSHANPT GGRYVH
Sbjct: 3 LFIARSGIEGLQAPVGVTSHANPTSGGRYVH 33
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 465 |
| Model size | 467 |
| Exons | 5 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1271.1666.1 >prot_E-siliculosus-1a_F_contig1271.1666.1 ID=prot_E-siliculosus-1a_F_contig1271.1666.1|Name=mRNA_E-siliculosus-1a_F_contig1271.1666.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=155bp
MDVSATTGRVRVACGPHARLKAFDARAMNRERRWRLNDVQGGRRMSFSEG
AEDATQRWAPETVREEWRAQAARATAVGSSHRPGRIRLLLSAPAGDEAGT
GDSAAGLTSRFESRAVSCGALSARRMTWLRRTWISMAVWRLRTKAERQGT
GTAGQ back to topmRNA from alignment at E-siliculosus-1a_F_contig1271:12718..15414+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1271.1666.1 ID=mRNA_E-siliculosus-1a_F_contig1271.1666.1|Name=mRNA_E-siliculosus-1a_F_contig1271.1666.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2697bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1271:12718..15414+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACGTATCGGCCACCACGGGTCGGGTTCGCGTGGCTTGTGGCCCCCA
CGCGCGCCTGAAGGCCTTCGACGCCAGAGCGATGAACAGGTACTGGTCCT
GATCCGCGAACTGTACCAGGCACGACAAGATGCCCTCGCATTCAAGAGCG
CGTGTGCTTACCACCGCGTCCCACTGCGCCACAGAGAGCGGCGGTGGCGA
CTGAACGACGTGCAGGGGGGGCGGAGGATGTCATTCAGTGAGGGGGCGGA
GGATGCCGTTCAGTGAGTACAGGCGCGCCGTATGTACACGGTAGAATCCT
TTTTGAGAACGACCTATGGAAGCCGAAATCAAACCATTAGACTAGTCAGC
GCTGACTAGTCTAATGGTTTGATTTCGGCTTCTATAGAAGTTAGTCGTGG
GGTTCGTGAGCCCCGCCACTTTCGCTTCCGAGGAGGGTGACTCCCCTTGC
CAGCCAGCGCTACTATCCGTCCAATCTTTATTTCGCTTCATATCACTCGC
CACCCACACCCTGCAGAATGTTCCAGGGTCCACGAGCCCTTCCGTCACTC
ATACTCTGACCAGGAGTATCCAGGGTCTCAGCAAAAAAAACACTTCAAGT
GTCCAGCCTGGGTCTCGAACCCACGACTAACTTATATAGAAGCCGACATC
AAACCATTTTTCTTTGCTGAAAAGAACACTCCGGGGCGATCGTTTTCAAA
TAGTAAACAGCCCATGGTCGAAAGGTTTCCGGTGGCGTTGTCTCTTTTTC
TCAGTTTCGAGGCACCCGTACCCACTACAGTACGCAGCGCTGACCCACGT
TACATCGGGGCTCAACAGCATGTTCGAGAAAGCATACAAGAAGCACAAGA
AGGTCGATTGGGGACGGTTGCGGCCTTCGCCGGCGGTGGATGGTACGCAA
TCCAACCCCAGGGGTAGTGCTCGGGCTATGTAGACCTCTGCGAACCCCCC
GTGGGGCTTCTCAATAATTTTCTGAAAAGATTGCCCTGGGGCGATTTCAA
AGAGAGGTAGAAGGGCGACAACAAATGAAACACACATATCGAGGGTCTAT
CTTGAAGTGTTTGTGCTACCTCTGCGGCATTTGTCTTTGGGGGTGGGCGT
TTTCATGGAGGGGGGCGTTCATCTCGAACGATATGACCGTGCGCGAAGTC
CATAGAAATTAGTTCTCAACTATGAAAAATTCTTGAGTAAATCACGGGCA
AGCATGACACGAAAATGCACACGAGCTCTTCATGTGCAGTCAGCAGCTGT
TCAATCCACCCAGCCGCGTAGTTCACTCGATTCAGAGGACTAACAGGTGA
TAACTTGCAGAATTGGCAACAAAGAACCAGTTAGACTCAGCGGTGGGCGC
CAGTCCGGTCTTCTCTCGCCTACAAACGGATTCCATACACTTGCGGATTG
GGGCGTTCAATGGGCACGCTTTGTGGCCGATTCTTTTACGCCTGTTCCGT
AGTATCTACAGGTGTGCGTCGAGGCATGGATTGACGTTGATCACGAACTA
TGACCTATTGGGGATGGCGCCCTGACGAACACCTCACACGATGAACTGCG
TCAAAGAGATAGAATCGGTTTACTCGCATCAGATAGGCCATGGTGGACTT
GGTCAGCATTGCCGGTGGCGGATCCTCCTCCTCCATCTCGTCCGGTGTCT
GCTACCCCGCTCTCGTGGGCCGATTTCGTTTCCTCAACCCCTTGGTTGCT
GTACGCAGGAGACGGTTCGGGAGGAGTGGAGGGCGCAAGCAGCACGTGCA
ACAGCAGTGGGGTCAAGCCATCGGCCAGGCCGGATAAGATTACTCCGTAC
AACATGTTTCCCAGAACAAAATTTGCTATAGATGCCTTGCGAATGTTGGT
ATTGATTTGTTTGTGCTTCACCTAGATCTCTGGGGCTCTGGGTCACCAAA
ACAGACTTCGCGGTGCAACATGCGAGGCGGGATGCCCATTGGGTCCGTAT
GGGTCTCCCGGGATATTCCTTCATTCGTGGCTTTCTCGATGGAAATATCG
TGTCTTGCGAGCATCTACATACACTCAGGCCTATGCATGGCCATCTTCCC
GTTGTTCTCGTCTCCATACAGGTACCTTGTTCCTCGAGATGGAGTTGCTT
GTTCCGATGCAGTAAATCCATGGCTAGAACGGCGGTTTCGACAGCCGAGA
TGCTGGCAAAATTGTGCTTATGTCTCACGTCTACAGGGAAATAAACAGAC
GCTCTTTGCTATAATCAAAGTGGGTTTTCCAGCCCGACCTCGGAAATAGA
CAACGTCTGGAAGAGAATACGCCATTAAAACAAACGCATGGAACACGGCT
TGACGCCGATGACATTCTCGTCAGCCCTTGACACGTTGGGGTCACCAACG
TGACGCAACCGACGCACGACCGCGGTCGGGAAAATCCTCGGCATGACGAA
CACCATCGACTCAGATGGCCTGTAAAAACCCACCTTCCTCCTCCGGTCTC
TCTGCGGCTGGTGCTGCCCGTGCCGCTCCTGTTGATGCCGACACCTGCAG
TCTCAGCACCGGCCGGTGATGAAGCAGGAACCGGGGATTCTGCAGCTGGC
TTGACGTCGAGGTTTGAGTCCCGTGCTGTATCTTGTGGTGCTCTCTCAGC
GCGAAGAATGACCTGGCTAAGGAGGACCTGGATCTCGATGGCCGTTTGGC
GGCTACGCACGAAGGCCGAGAGACAGGGGACGGGGACGGCGGGTCAA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1271:12718..15414+ >mRNA_E-siliculosus-1a_F_contig1271.1666.1 ID=mRNA_E-siliculosus-1a_F_contig1271.1666.1|Name=mRNA_E-siliculosus-1a_F_contig1271.1666.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=930bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1271:12718..15414+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACGTATCGGCCACCACGGGTCGGGTTCGCGTGGCTTGTGGCCCCCA
CGCGCGCCTGAAGGCCTTCGACGCCAGAGCGATGAACAGATGGACGTATC
GGCCACCACGGGTCGGGTTCGCGTGGCTTGTGGCCCCCACGCGCGCCTGA
AGGCCTTCGACGCCAGAGCGATGAACAGAGAGCGGCGGTGGCGACTGAAC
GACGTGCAGGGGGGGCGGAGGATGTCATTCAGTGAGGGGGCGGAGGATGC
CAGAGCGGCGGTGGCGACTGAACGACGTGCAGGGGGGGCGGAGGATGTCA
TTCAGTGAGGGGGCGGAGGATGCCACTCAGCGGTGGGCGCCAACTCAGCG
GTGGGCGCCAGAGACGGTTCGGGAGGAGTGGAGGGCGCAAGCAGCACGTG
CAACAGCAGTGGGGTCAAGCCATCGGCCAGGCCGGATAAGATTACTCCGA
GACGGTTCGGGAGGAGTGGAGGGCGCAAGCAGCACGTGCAACAGCAGTGG
GGTCAAGCCATCGGCCAGGCCGGATAAGATTACTCCTCTCAGCACCGGCC
GGTGATGAAGCAGGAACCGGGGATTCTGCAGCTGGCTTGACGTCGAGGTT
TGAGTCCCGTGCTGTATCTTGTGGTGCTCTCTCAGCGCGAAGAATGACCT
GGCTAAGGAGGACCTGGATCTCGATGGCCGTTTGGCGGCTACGCACGAAG
GCCGAGAGACAGGGGACGGGGACGGCGGGTCAATCTCAGCACCGGCCGGT
GATGAAGCAGGAACCGGGGATTCTGCAGCTGGCTTGACGTCGAGGTTTGA
GTCCCGTGCTGTATCTTGTGGTGCTCTCTCAGCGCGAAGAATGACCTGGC
TAAGGAGGACCTGGATCTCGATGGCCGTTTGGCGGCTACGCACGAAGGCC
GAGAGACAGGGGACGGGGACGGCGGGTCAA back to top
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