mRNA_E-siliculosus-1a_F_contig1271.1664.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1271.1664.1
Unique NamemRNA_E-siliculosus-1a_F_contig1271.1664.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1271.1664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1271contigE-siliculosus-1a_F_contig1271:771..899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size129
Model size129
Exons1
Ec32 orthologEc-27_006600.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927794.3401308-CDS-E-siliculosus-1a_F_contig1271:770..8991622927794.3401308-CDS-E-siliculosus-1a_F_contig1271:770..899Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1271 771..899 +
1696318682.0361953-CDS-E-siliculosus-1a_F_contig1271:770..8991696318682.0361953-CDS-E-siliculosus-1a_F_contig1271:770..899Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1271 771..899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1271.1664.1prot_E-siliculosus-1a_F_contig1271.1664.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1271 771..899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1271.1664.1

>prot_E-siliculosus-1a_F_contig1271.1664.1 ID=prot_E-siliculosus-1a_F_contig1271.1664.1|Name=mRNA_E-siliculosus-1a_F_contig1271.1664.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=43bp
MAGLRHPHHHPRSRNNSLGSLIGTDNNHPVPQLYQGLSCHYV*
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mRNA from alignment at E-siliculosus-1a_F_contig1271:771..899+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1271.1664.1 ID=mRNA_E-siliculosus-1a_F_contig1271.1664.1|Name=mRNA_E-siliculosus-1a_F_contig1271.1664.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=129bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1271:771..899+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCAGGCCTCCGCCACCCCCACCACCATCCTCGGAGTCGAAATAATAG
CCTAGGCAGCCTGATTGGCACCGACAACAATCACCCAGTGCCACAACTTT
ACCAGGGTCTCTCCTGTCACTACGTGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1271:771..899+

>mRNA_E-siliculosus-1a_F_contig1271.1664.1 ID=mRNA_E-siliculosus-1a_F_contig1271.1664.1|Name=mRNA_E-siliculosus-1a_F_contig1271.1664.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=258bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1271:771..899+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCAGGCCTCCGCCACCCCCACCACCATCCTCGGAGTCGAAATAATAG
CCTAGGCAGCCTGATTGGCACCGACAACAATCACCCAGTGCCACAACTTT
ACCAGGGTCTCTCCTGTCACTACGTGTGAATGGCAGGCCTCCGCCACCCC
CACCACCATCCTCGGAGTCGAAATAATAGCCTAGGCAGCCTGATTGGCAC
CGACAACAATCACCCAGTGCCACAACTTTACCAGGGTCTCTCCTGTCACT
ACGTGTGA
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