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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig127.1661.1 vs. uniprot
Match: A0A6H5KXU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXU8_9PHAE) HSP 1 Score: 638 bits (1646), Expect = 3.500e-228 Identity = 365/399 (91.48%), Postives = 376/399 (94.24%), Query Frame = 1
Query: 82 MVSPRILAVFCGLDLLQGASAWQPRSLRVPTST-TGQCRAVRDIVAGEHHRVRKQWSALRSVADGEGAGGAGRPDLASMKRAFEGTMDNKLIMEYVMELRSRKALLLSSLEETGGVITDDIYPIMEELALVNPSSGCGVGKDLGKSHYCAMLPGHWIAASTIVPNVPFVHGDGEKATNRSPSSRGAGPTCTLGELMSSISGRPVSGGELEYNADTPVRPLRARISALTNTVKDGEMPTVVAVAGFSPAAEAQPVKATGSEAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGVRSEGFGRVADVVLTEDGAVRGRGKWGVRGGYHLRWEFNTMNLDLGGDKIVKAGAQDGDGGRDLYEFFLDQNMLIVAWKDAPKKEDAVVFVRDEVPR 1275
MVS R LAV CG+DLL G SAW P LRV TST T Q AVRDIVAGEH VR+QWSALRSVADGEG GGAGRPDLASMKR+FEGTMDNKLIMEYV ELRSRKALLLSSLEETGGVITDDIYPIMEELALVNPSSGCGVGKD GKSHYCAMLPGHWIAASTIVPNVPFV+GDGEK+TNRSPSSRGAGPTCTLGEL+SSISGRPV+GG+LEYNADTPVRPLRARISALTNTVKDGEMPTVVAVAGFSPAAEAQPVKATGS AG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGVR+EGFGRVADVVLTEDGAVRGRGKWGVRGGYHLRWEFNTMNLDLGGDKIVKAG + GDGGRDLYEFFLDQNMLIVAWKD+PKKEDAVVFVRDEVPR
Sbjct: 1 MVSSRTLAVVCGVDLLHGVSAWLPSPLRVSTSTATDQRWAVRDIVAGEHRDVRQQWSALRSVADGEGDGGAGRPDLASMKRSFEGTMDNKLIMEYVTELRSRKALLLSSLEETGGVITDDIYPIMEELALVNPSSGCGVGKDQGKSHYCAMLPGHWIAASTIVPNVPFVYGDGEKSTNRSPSSRGAGPTCTLGELVSSISGRPVTGGQLEYNADTPVRPLRARISALTNTVKDGEMPTVVAVAGFSPAAEAQPVKATGSAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGVRTEGFGRVADVVLTEDGAVRGRGKWGVRGGYHLRWEFNTMNLDLGGDKIVKAGGEGGDGGRDLYEFFLDQNMLIVAWKDSPKKEDAVVFVRDEVPR 399
BLAST of mRNA_E-siliculosus-1a_F_contig127.1661.1 vs. uniprot
Match: D7G1F7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1F7_ECTSI) HSP 1 Score: 519 bits (1336), Expect = 2.370e-182 Identity = 294/315 (93.33%), Postives = 298/315 (94.60%), Query Frame = 1
Query: 337 MDNKLIMEYVMELRSRKALLLSSLEETGGVITDDIYPIMEELALVNPSSGCGVGKDLGKSHYCAMLPGHWIAASTIVPNVPFVHGDGEKATNRSPSSRGAGPTCTLGELMSSISGRPVSGGELEYNADTPVRPLRARISALTNTVKDGEMPTVVAVAGFSPAAEAQPVKATGSEAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GAGVRSEGFGRVADVVLTEDGAVRGRGKWGVRGGYHLRWEFNTMNLDLGGDKIVKAGAQDGDGGRDLYEFFLDQNMLIVAWKDAPKKEDAVVFVRDEVPR 1275
MDNKLIMEYVMELRSRKALLLSSLEETGGVITDDIYPIMEELALVNPSSGCGVGKDLGKSHYCAMLPGHWIAASTIVPNVPFV+GDGEKATNRSPSSRGAGPTCTLGEL+SSISGRPVSGGELEYNADTPVRPLRARISALTNTVKDGEMPTVVAVAGFSPAAEAQPVKATGS AG XXXXXXXXXX XXXXXXXXXXXXXXXX GAGVR+EGFGRVADVVLTEDGAVRGRGKWGV GGYHLRWEFNTMNLDLGGDKIVKAG + GDGGRDLYEFFLDQNMLIVAWKDAPKKEDAVVFVRDEVPR
Sbjct: 1 MDNKLIMEYVMELRSRKALLLSSLEETGGVITDDIYPIMEELALVNPSSGCGVGKDLGKSHYCAMLPGHWIAASTIVPNVPFVYGDGEKATNRSPSSRGAGPTCTLGELVSSISGRPVSGGELEYNADTPVRPLRARISALTNTVKDGEMPTVVAVAGFSPAAEAQPVKATGSAAGXXXXXXXXXXXXKDAQAKALAXXXXXXXXXXXXXXXXXXGAGVRAEGFGRVADVVLTEDGAVRGRGKWGVTGGYHLRWEFNTMNLDLGGDKIVKAGGEGGDGGRDLYEFFLDQNMLIVAWKDAPKKEDAVVFVRDEVPR 315
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 0 |
| Stop | 1 |
| Cds size | 1278 |
| Model size | 1279 |
| Exons | 3 |
| Ec32 ortholog | Ec-07_000850.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig127.1661.1 >prot_E-siliculosus-1a_F_contig127.1661.1 ID=prot_E-siliculosus-1a_F_contig127.1661.1|Name=mRNA_E-siliculosus-1a_F_contig127.1661.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=426bp
VTAAEATAQQEGRPPTTGRERNTSLTEMVSPRILAVFCGLDLLQGASAWQ PRSLRVPTSTTGQCRAVRDIVAGEHHRVRKQWSALRSVADGEGAGGAGRP DLASMKRAFEGTMDNKLIMEYVMELRSRKALLLSSLEETGGVITDDIYPI MEELALVNPSSGCGVGKDLGKSHYCAMLPGHWIAASTIVPNVPFVHGDGE KATNRSPSSRGAGPTCTLGELMSSISGRPVSGGELEYNADTPVRPLRARI SALTNTVKDGEMPTVVAVAGFSPAAEAQPVKATGSEAGAAAGGGGQDPKD AQAKALAAAMMEAAAREPRAAAAAGGAGVRSEGFGRVADVVLTEDGAVRG RGKWGVRGGYHLRWEFNTMNLDLGGDKIVKAGAQDGDGGRDLYEFFLDQN MLIVAWKDAPKKEDAVVFVRDEVPR* back to topmRNA from alignment at E-siliculosus-1a_F_contig127:62068..65329- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig127.1661.1 ID=mRNA_E-siliculosus-1a_F_contig127.1661.1|Name=mRNA_E-siliculosus-1a_F_contig127.1661.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3262bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig127:62068..65329- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) GTGACCGCAGCGGAGGCCACAGCACAGCAGGAAGGCCGGCCACCCACCAC
TGGGCGAGAAAGGAACACCTCGCTCACGGAAATGGTGTCTCCTCGAATAC
TCGCCGTCTTTTGTGGCCTGGATCTTTTGCAAGGTGCATCCGCATGGCAG
CCACGCTCACTCAGAGTGCCCACCAGCACTACAGGCCAGTGTCGGGCTGT
TAGAGATATTGTGGCAGGCGAGCATCATCGTGTGCGGAAGCAATGGTCGG
CGCTTCGCAGCGTCGCTGACGGGGAGGGTGCCGGGGGGGCGGGCCGGCCT
GATCTGGCATCGATGAAGCGTGCGTTTGAGGGTACCATGGACAACAAGCT
CATCATGGAGTACGTAATGGTGAGAGTTTCAATGTCAAAGCTCCGGGCAA
CACATGTTTTTCATCCTGAGACCATGCACGTTGCAGCACCTGTATAGTGT
TCACAGCAGTGTAAGAGCTGAAAAATCTTTGCTCCAGCATCGTTCTTCGA
ATATGTCATGTTGGCTGCCAATGCGGGTGGGTGGCTCCTTTTTGTATTGA
AAAGGAGCAGCAGCGGCAGCACCAGGGTGGTGCATGGCAAATCATGACAG
CGTCGCTCCTATGTTGACACTCCATCGTAGAGGGTGTTCGCGGATCTTTT
GTTTCTCTTCCAAGACTTGCAGCGTCCCCGTTCGTAGGTTGTTGGTGGTT
CTCCTCTGTGCATGGACTCGATGCGCCATATACACGGGCACATAGACAGC
TGCCGCTTTCAAACACCGTCGCCCTTTTCAGCCCTCGCTCGGTATTTGGC
TGCAGCTTTTCCAGCTCATATCCGCGGCTGCTGCTTCTGCCGCTGGCACA
CCACGGGCAGCCATGTGTCTCACAGCGTGCCCAACGGGCGTATCTTTTGA
CCATATCATACTGCAGTATAAACAACGGCAGCCTTCCATCAATTACTGCT
GTTCACACCCCATCCGCTTACTTTTGTTTACCCCCGCATCGGAAAAGACA
ACAGCAGTAAAGTGGCGCTCGCTTAGGCATCGCAGCGCCGCCCTTGTGTG
ACCTTGAGGGCCGACCTTCACACTGCTATCGTCGCGCCGACGTCCAGGTC
AAGAAATAGCTTGCGTCCGCGCATCGTACCATTGTCTGCTCCTCCCAACG
TCGCCGACGAATTCCTTGTTCTGCCTGCGGTGTCGGGTAGATGTGTTTGG
TAAGCTTGGACGGTGACAGAACTCGGCATTCTCTCCCACAAGCGAGGTTC
TGCTTGACAGCAATGTCTTCACCCCAAGAACCGCTGATTGGCGGGTACTG
CTGCCCCACTCCTTCTGTTTCCCGCTGGCTTGCGACGACCCGTCTTTCCC
TGGCGTTCTTTGTCGAATGCAACCTTGTTGATTTTCTTTTCTCTGCACAT
TGAGGTGCTCGTCTTTTCTACCTCTCGTTTAGGCCTCTGACACAACCACA
TAGCTCTACCATGACCACTCCAAGCAGAGCGTTTTGATTCAACACCTAAA
ACTCACCAGCTCGACTCTCACCCACGTTCCCCATATATCCACCTGACGCG
CTCCGCCTGGGCTCGGTGTATGCTCTAGAGGTAACCACATATGACCACCA
GGACACCTGCTCTCTCTCTCTCTCTCTGTGTGTCTCTCGTACGGAATCTT
GTCACGACGTTTCCCAGGAACTTCGATCACGTAAAGCTCTTCTGCTGTCG
TCCTTGGAAGAAACGGGGGGTGTGATCACCGACGACATTTACCCGATCAT
GGAGGAACTTGCCCTGGTCAACCCTTCCTCGGGGTGCGGGGTGGGCAAGG
ACCTGGGGAAGTCGCACTACTGCGCAATGCTTCCAGGTACGCGTGTCTGT
ATTGTTGGCACCAACCGCGCTAACCGGCTGACTATTGATGAAATACTGCG
TCAGTCTCAGTGCGGCTGATAACAGGGAGCGCTTCTGCAGGCCATGATCT
GCGACCCCCGTGAGGTGGCGTCAGGCTAGGCTATTGTCCGGTGTATGACG
TAAACGGTAAAGCAGAAAATGTCTGTGTGTGTCTTGTGTATTTTATGTCC
ATCTACAGCGCTAACTGGCTGACGAAGGAAAGGCCGCCGGTTAGTAAAGC
AGGGTACAAAACTTGAACACTAGCCATCGGTGTGCGTGCGGGGGTGCTGT
CTTGCCTCCTGCTGGCGAGGAACAAATTGCGCGCGTTGGAGGTTACGATA
TGGTGGCAGACTAGAATTACACATTTGGCGTGCCACTTGGTTCCAGCCTT
GAGCAATGCGGTTTCTTCTCGGCGGGTCGGAGCACATCCAAATGTTGTGG
ACATTAGGTGCACTTTTCTTGCTGTTCCTCGGCAGCAGCCGCACCGTTTC
GGACAGAATTCCTCGACAGTGGTGCTTGGGTCACAACGAAAAAATTCTGG
GAAGCAGCAGAACACAGAACACTCGTTTTACCGGCCATGTTAACGCCCCC
CCCCCCCTTGGAAACGCTCTCTTCCCCTTTGGAAACCCCAACGACGTCGG
AATCATGATGATGCATGACCAGGGCACTGGATCGCCGCCTCCACCATCGT
CCCGAACGTACCCTTCGTCCACGGAGACGGCGAGAAGGCCACCAACCGTT
CACCATCATCCAGAGGTGCCGGCCCGACCTGCACCCTGGGCGAGCTTATG
TCATCCATCTCCGGAAGACCTGTCTCCGGCGGCGAACTAGAGTACAACGC
CGACACCCCGGTGCGACCCCTCCGGGCGCGAATCAGCGCCTTGACCAACA
CCGTCAAGGACGGCGAGATGCCCACCGTAGTCGCGGTCGCCGGCTTCTCC
CCGGCGGCGGAGGCGCAGCCGGTCAAGGCCACTGGGTCTGAGGCGGGAGC
TGCTGCCGGGGGGGGCGGCCAAGACCCGAAGGATGCCCAGGCGAAGGCTC
TCGCGGCCGCGATGATGGAGGCCGCGGCGAGGGAACCGCGGGCGGCGGCG
GCTGCCGGAGGGGCCGGCGTCCGCTCGGAAGGGTTCGGGAGAGTGGCCGA
CGTGGTCCTGACGGAGGACGGGGCGGTGCGGGGAAGGGGAAAGTGGGGGG
TGCGGGGGGGTTACCACCTCAGGTGGGAGTTCAACACCATGAACTTGGAC
CTGGGCGGGGACAAGATCGTGAAGGCGGGGGCGCAGGACGGTGACGGCGG
GAGAGACCTGTACGAGTTTTTCTTGGATCAGAACATGCTGATCGTGGCGT
GGAAGGACGCGCCCAAGAAGGAAGACGCCGTGGTCTTCGTGCGGGACGAG
GTTCCTCGATGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig127:62068..65329- >mRNA_E-siliculosus-1a_F_contig127.1661.1 ID=mRNA_E-siliculosus-1a_F_contig127.1661.1|Name=mRNA_E-siliculosus-1a_F_contig127.1661.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2556bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig127:62068..65329- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) GTGACCGCAGCGGAGGCCACAGCACAGCAGGAAGGCCGGCCACCCACCAC TGGGCGAGAAAGGAACACCTCGCTCACGGAAATGGTGTCTCCTCGAATAC TCGCCGTCTTTTGTGGCCTGGATCTTTTGCAAGGTGCATCCGCATGGCAG CCACGCTCACTCAGAGTGCCCACCAGCACTACAGGCCAGTGTCGGGCTGT TAGAGATATTGTGGCAGGCGAGCATCATCGTGTGCGGAAGCAATGGTCGG CGCTTCGCAGCGTCGCTGACGGGGAGGGTGCCGGGGGGGCGGGCCGGCCT GATCTGGCATCGATGAAGCGTGCGTTTGAGGGTACCATGGACAACAAGCT CATCATGGAGTACGTAATGGTGACCGCAGCGGAGGCCACAGCACAGCAGG AAGGCCGGCCACCCACCACTGGGCGAGAAAGGAACACCTCGCTCACGGAA ATGGTGTCTCCTCGAATACTCGCCGTCTTTTGTGGCCTGGATCTTTTGCA AGGTGCATCCGCATGGCAGCCACGCTCACTCAGAGTGCCCACCAGCACTA CAGGCCAGTGTCGGGCTGTTAGAGATATTGTGGCAGGCGAGCATCATCGT GTGCGGAAGCAATGGTCGGCGCTTCGCAGCGTCGCTGACGGGGAGGGTGC CGGGGGGGCGGGCCGGCCTGATCTGGCATCGATGAAGCGTGCGTTTGAGG GTACCATGGACAACAAGCTCATCATGGAGTACGTAATGGAACTTCGATCA CGTAAAGCTCTTCTGCTGTCGTCCTTGGAAGAAACGGGGGGTGTGATCAC CGACGACATTTACCCGATCATGGAGGAACTTGCCCTGGTCAACCCTTCCT CGGGGTGCGGGGTGGGCAAGGACCTGGGGAAGTCGCACTACTGCGCAATG CTTCCAGGAACTTCGATCACGTAAAGCTCTTCTGCTGTCGTCCTTGGAAG AAACGGGGGGTGTGATCACCGACGACATTTACCCGATCATGGAGGAACTT GCCCTGGTCAACCCTTCCTCGGGGTGCGGGGTGGGCAAGGACCTGGGGAA GTCGCACTACTGCGCAATGCTTCCAGGGCACTGGATCGCCGCCTCCACCA TCGTCCCGAACGTACCCTTCGTCCACGGAGACGGCGAGAAGGCCACCAAC CGTTCACCATCATCCAGAGGTGCCGGCCCGACCTGCACCCTGGGCGAGCT TATGTCATCCATCTCCGGAAGACCTGTCTCCGGCGGCGAACTAGAGTACA ACGCCGACACCCCGGTGCGACCCCTCCGGGCGCGAATCAGCGCCTTGACC AACACCGTCAAGGACGGCGAGATGCCCACCGTAGTCGCGGTCGCCGGCTT CTCCCCGGCGGCGGAGGCGCAGCCGGTCAAGGCCACTGGGTCTGAGGCGG GAGCTGCTGCCGGGGGGGGCGGCCAAGACCCGAAGGATGCCCAGGCGAAG GCTCTCGCGGCCGCGATGATGGAGGCCGCGGCGAGGGAACCGCGGGCGGC GGCGGCTGCCGGAGGGGCCGGCGTCCGCTCGGAAGGGTTCGGGAGAGTGG CCGACGTGGTCCTGACGGAGGACGGGGCGGTGCGGGGAAGGGGAAAGTGG GGGGTGCGGGGGGGTTACCACCTCAGGTGGGAGTTCAACACCATGAACTT GGACCTGGGCGGGGACAAGATCGTGAAGGCGGGGGCGCAGGACGGTGACG GCGGGAGAGACCTGTACGAGTTTTTCTTGGATCAGAACATGCTGATCGTG GCGTGGAAGGACGCGCCCAAGAAGGAAGACGCCGTGGTCTTCGTGCGGGA CGAGGTTCCTCGATGAGGCACTGGATCGCCGCCTCCACCATCGTCCCGAA CGTACCCTTCGTCCACGGAGACGGCGAGAAGGCCACCAACCGTTCACCAT CATCCAGAGGTGCCGGCCCGACCTGCACCCTGGGCGAGCTTATGTCATCC ATCTCCGGAAGACCTGTCTCCGGCGGCGAACTAGAGTACAACGCCGACAC CCCGGTGCGACCCCTCCGGGCGCGAATCAGCGCCTTGACCAACACCGTCA AGGACGGCGAGATGCCCACCGTAGTCGCGGTCGCCGGCTTCTCCCCGGCG GCGGAGGCGCAGCCGGTCAAGGCCACTGGGTCTGAGGCGGGAGCTGCTGC CGGGGGGGGCGGCCAAGACCCGAAGGATGCCCAGGCGAAGGCTCTCGCGG CCGCGATGATGGAGGCCGCGGCGAGGGAACCGCGGGCGGCGGCGGCTGCC GGAGGGGCCGGCGTCCGCTCGGAAGGGTTCGGGAGAGTGGCCGACGTGGT CCTGACGGAGGACGGGGCGGTGCGGGGAAGGGGAAAGTGGGGGGTGCGGG GGGGTTACCACCTCAGGTGGGAGTTCAACACCATGAACTTGGACCTGGGC GGGGACAAGATCGTGAAGGCGGGGGCGCAGGACGGTGACGGCGGGAGAGA CCTGTACGAGTTTTTCTTGGATCAGAACATGCTGATCGTGGCGTGGAAGG ACGCGCCCAAGAAGGAAGACGCCGTGGTCTTCGTGCGGGACGAGGTTCCT CGATGA back to top
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