mRNA_E-siliculosus-1a_F_contig127.1660.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig127.1660.1 vs. uniprot
Match: D7G1F6_ECTSI (Elongation of fatty acids protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1F6_ECTSI) HSP 1 Score: 991 bits (2562), Expect = 0.000e+0 Identity = 559/619 (90.31%), Postives = 563/619 (90.95%), Query Frame = 2
Query: 62 MAQQAFEDMRVVDLKVELKARGLPVSGLKAVLIQRLHDHDNSLVEKLAQAKDEEPTAAVKSSDGAGAGLSPETVTKTLPTVADVGKQVESSTPTKDAVGAAAAAIPATGEISEEISPKKQEISPKK-------KPDAAVAPQVSDAPATEPRSTRSKTRRASMVNTAPAPADSAEATPTIPEVTVKSTVAAPVTVKPEAAVPAAEGGGGSGAEVVDSNSETQIRLAKTAGVFGVVVSAACIGSGHGLTAGNLATLHVALLGLFIAATASNKRPTGSRAFAARAIVTLALALVASEALQQTQRQXXXXXXXXXXXXXX--MATLSALVSDRVAASLSCGTEGGGGVSCGQVGEAVLPTLQACLHWMKGLWSVLEEGEWRSVRFGVIEFWGWASVAGYLALVEALPVMLQPLHGVFRRLERGHNILLALTSAAMLVGIIRSCVTSRKTSSVHAMLCGAFDEEDPVFDLTAKTFFWSKAWEWVDTAILVAKGKPVSWLQYTHHASTAILTALNMVPTRNAMWSVVCALNSFVHAWMYAYYAFPRFSVLRRTKVWLTWAQMVQHMIVLASATYVVYQSRTGAECHNNTTPILAGLGLYLMYLVFFALFYRRTYLGGAKKAHRK 1891
MAQQAFEDMRVV+LKVELKARGLPVSGLKAVLIQRLHDHDNSLVEKLAQAKDEEPTAAVKSSDGAGA LSPETVTK LPTVADVGKQVESSTPTKDAVGAAAAAIPATGE SEEISPKKQ PDAAVAPQV DAPATEPRSTRSKTRRASM NTAPA EVTVKST AAPV VKPEA AEVVDSNSETQIRLAKTAGVFGVVVSAACIG GHGLTAGNLATLHVALLGLFIAATASN RPTGSRAFAA+AIVTLALALVASEALQQTQR XXXXXXXXXXXXXX MATLSALVSDRVAA LSCGTEGGGGVSCGQVGE VLPTLQACLHWMKGLWSVLEEGEWRSVRFGVIEFWGWASVAGYLALVEALPVMLQPLHGVFRRLERGHNILLALTSAAMLVGIIRSCVTS KTSSVHAMLCGAFDEEDPVFD+TAKTFFWSKAWEWVDTAILVAKGKPVSWLQYTHHASTAILTALNMVPTRNAMWSVVCALNSFVHAWMYAYYAFPRFS+LRRTKVWLTWAQMVQHMIVLASATYVVYQSRTG ECHNNTTPILAGLGLYLMYLVFFALFYRRTYLGGAKKA K
Sbjct: 1 MAQQAFEDMRVVELKVELKARGLPVSGLKAVLIQRLHDHDNSLVEKLAQAKDEEPTAAVKSSDGAGAELSPETVTKALPTVADVGKQVESSTPTKDAVGAAAAAIPATGENSEEISPKKQXXXXXXXXXXXXXNPDAAVAPQVLDAPATEPRSTRSKTRRASMANTAPAXXXXXXXXXXXXEVTVKSTAAAPVIVKPEAPXXXXXXXXXXXAEVVDSNSETQIRLAKTAGVFGVVVSAACIGWGHGLTAGNLATLHVALLGLFIAATASNNRPTGSRAFAAKAIVTLALALVASEALQQTQRXXXXXXXXXXXXXXXXXMATLSALVSDRVAAILSCGTEGGGGVSCGQVGEGVLPTLQACLHWMKGLWSVLEEGEWRSVRFGVIEFWGWASVAGYLALVEALPVMLQPLHGVFRRLERGHNILLALTSAAMLVGIIRSCVTSGKTSSVHAMLCGAFDEEDPVFDMTAKTFFWSKAWEWVDTAILVAKGKPVSWLQYTHHASTAILTALNMVPTRNAMWSVVCALNSFVHAWMYAYYAFPRFSLLRRTKVWLTWAQMVQHMIVLASATYVVYQSRTGTECHNNTTPILAGLGLYLMYLVFFALFYRRTYLGGAKKAQIK 619
BLAST of mRNA_E-siliculosus-1a_F_contig127.1660.1 vs. uniprot
Match: A0A835ZBR2_9STRA (Elongation of fatty acids protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBR2_9STRA) HSP 1 Score: 232 bits (591), Expect = 3.700e-59 Identity = 141/276 (51.09%), Postives = 164/276 (59.42%), Query Frame = 2
Query: 1175 RFGV--------IEFWGWASVAGYLALVEALPVMLQP---------------------LHGVFRRLERGHNILLALTSAAMLVGIIRSCVTSRKTSSVHAMLCGAFDEEDPVFDLTAKTFFWSKAWEWVDTAILVAKGKPVSWLQYTHHASTAILTALNMVPTRNAMWSVVCALNSFVHAWMYAYYAFPRFSVLRRTKVWLTWAQMVQHMIVLASATYVVYQ---SRTG------AECHNNTTPILAGLGLYLMYLVFFALFYRRTYLGGAKKAHR 1888
RFGV ++ G SV GYLA VE + L P + RLE HN+ LA SA MLVGI+RSC S K S+HA+LC F +ED VF TA FFWSK WEW DTA+LVAKGKPV+WL YTHHASTA+LT LNM P NAMWS+VCA NSFVHAWMY YY P S+LR + +T Q++QH VLASA YV+ + R G A C N+ PI AGLGLYLMY +FF FY +TY AKK R
Sbjct: 680 RFGVDPFAPLTAVQIAGMTSVLGYLAFVEVALLFLAPPTAPADEPGSTPEEATAKGGTMRKAVLRLENAHNMGLAALSAGMLVGIVRSCFVSGKVESLHALLCQPF-QEDTVFLWTAHLFFWSKFWEWGDTALLVAKGKPVTWLHYTHHASTAVLTMLNMSPIYNAMWSIVCATNSFVHAWMYGYYWKP--SLLRPLRRAITRIQILQHAGVLASALYVLRELLRPRQGDDKAMEAGCANSLVPIAAGLGLYLMYFLFFLAFYIQTY---AKKQRR 949
BLAST of mRNA_E-siliculosus-1a_F_contig127.1660.1 vs. uniprot
Match: A0A6C0EJX8_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0EJX8_9ZZZZ) HSP 1 Score: 123 bits (309), Expect = 5.030e-28 Identity = 71/190 (37.37%), Postives = 108/190 (56.84%), Query Frame = 2
Query: 1295 HNILLALTSAAMLVGIIRSCVTSRKTSSVHAMLCGAFDEEDPVFDLTAKTFFWSKAWEWVDTAILVAKGKPVSWLQYTHHASTAILTALNMVPTRNAMWSVVCALNSFVHAWMYAYYAFPRFSVLRRTKVWLTWAQMVQHMIVLASATYVVYQSRTGAECHNNTTPILAGLGLYLMYLVFFALFYRRTYL 1864
HNI+L + S ML+GI + + K ++++ +LC ++ + ++ F +SK EW DT L GK +S LQYTHH +TA L NMV + V +LN FVH WMY Y+A+PR L++ KV +T AQ+VQH++ L + Y + C N G LY+MYL++F++FY + Y+
Sbjct: 38 HNIILCILSFIMLIGITVANYQTYKFNTLNNLLCVPYNN-NIYATISVTLFLYSKYIEWGDTVYLHLSGKSISQLQYTHHMTTAFLVYCNMVDYISPGIYVCMSLNCFVHIWMYWYFAYPR-GYLKKYKVLITQAQIVQHIVCLVAIIYTSFLD----NCEQNKYGNSVGFLLYMMYLLYFSMFYFKNYI 221
BLAST of mRNA_E-siliculosus-1a_F_contig127.1660.1 vs. uniprot
Match: A0A7S3H2Y1_9STRA (Elongation of fatty acids protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H2Y1_9STRA) HSP 1 Score: 120 bits (302), Expect = 1.700e-27 Identity = 67/155 (43.23%), Postives = 88/155 (56.77%), Query Frame = 2
Query: 1202 WASVAGYLALVE----ALPVMLQPLHGVFRRLERGHNILLALTSAAMLVGIIRSCVTSRKTSSVHAMLCGAFDEEDPVFDLTAKTFFWSKAWEWVDTAILVAKGKPVSWLQYTHHASTAILTALNMVPTRNAMWSVVCALNSFVHAWMYAYYAFP 1654
WAS Y+ VE LP + +F L HN+ LA+ S ML+GI+ S K +S+HA LC F + + L + F+ SK WEWVDTA L+ K VSWLQYTHH STAIL N+ P ++ + C N+FVH +MY Y+AFP
Sbjct: 21 WASPVLYMVYVEIAKRVLPYESKENKHIFHVLRLVHNVGLAIASLVMLIGILAVSHQSGKLNSIHAALCDPFLDVESA-TLVGRYFYLSKYWEWVDTAFLITARKDVSWLQYTHHMSTAILVFANLTPVISSASLLACFTNTFVHVFMYFYFAFP 174
BLAST of mRNA_E-siliculosus-1a_F_contig127.1660.1 vs. uniprot
Match: A0A6J3L2Y8_9HYME (Elongation of very long chain fatty acids protein n=13 Tax=Pyrobombus TaxID=144703 RepID=A0A6J3L2Y8_9HYME) HSP 1 Score: 92.0 bits (227), Expect = 6.500e-17 Identity = 62/176 (35.23%), Postives = 97/176 (55.11%), Query Frame = 2
Query: 1355 VTSRKTSSVHAMLCGAFDEEDPVFDLTAKTFFWSKAWEWVDTAILVAKGKPVSWLQYTHHASTAILTALNMVP-TRNAMWSVVCALNSFVHAWMYAYYAFP--RFSVLRRTKVWLTW---AQMVQHMIVLASATYVVYQSRTGAECHNNTTPILAGLGLYLMYLVFFALFYRRTYL 1864
VTS T+ + +L + DPVF + TF SK E+ DTA +V + +P+ +L + HH + + T + T N W + +NSFVHAWMY+YYA RF++ + +++T +QMV I+ ASA Y V+ ++ ECH I + +YL Y + FA F+++ YL
Sbjct: 59 VTSHGTAKCNYILSSHLTQ-DPVFGFWSWTFALSKLVEFGDTAFIVLRKQPLIFLHWYHHVTVLLYTWFSYAEATGNGKWFGL--VNSFVHAWMYSYYALKAMRFNIPKWVAMFVTTLQLSQMVVGCILTASAYYYVHSAQV--ECHVTPLNIKLAMLMYLSYFILFARFFQQAYL 229
BLAST of mRNA_E-siliculosus-1a_F_contig127.1660.1 vs. uniprot
Match: A0A6P8MT59_9HYME (Elongation of very long chain fatty acids protein n=2 Tax=Pyrobombus TaxID=144703 RepID=A0A6P8MT59_9HYME) HSP 1 Score: 90.1 bits (222), Expect = 7.520e-17 Identity = 57/157 (36.31%), Postives = 89/157 (56.69%), Query Frame = 2
Query: 1412 EDPVFDLTAKTFFWSKAWEWVDTAILVAKGKPVSWLQYTHHASTAILTALNMVP-TRNAMWSVVCALNSFVHAWMYAYYAFP--RFSVLRRTKVWLTW---AQMVQHMIVLASATYVVYQSRTGAECHNNTTPILAGLGLYLMYLVFFALFYRRTYL 1864
+DPVF + TF SK E+ DTA +V + +P+ +L + HH + + T + T N W + +NSFVHAWMY+YYA RF++ + +++T +QMV I+ ASA Y V+ ++ ECH I + +YL Y + FA F+++ YL
Sbjct: 18 QDPVFGFWSWTFALSKLVEFGDTAFIVLRKQPLIFLHWYHHVTVLLYTWFSYAEATGNGKWFGL--VNSFVHAWMYSYYALKAMRFNIPKWVAMFVTTLQLSQMVVGCILTASAYYYVHSAQV--ECHVTPLNIKLAMLMYLSYFILFARFFQQAYL 170
BLAST of mRNA_E-siliculosus-1a_F_contig127.1660.1 vs. uniprot
Match: A0A6P3DII0_BOMTE (Elongation of very long chain fatty acids protein n=5 Tax=Bombus TaxID=28641 RepID=A0A6P3DII0_BOMTE) HSP 1 Score: 90.9 bits (224), Expect = 3.320e-16 Identity = 58/167 (34.73%), Postives = 93/167 (55.69%), Query Frame = 2
Query: 1382 HAMLCGAFDEEDPVFDLTAKTFFWSKAWEWVDTAILVAKGKPVSWLQYTHHASTAILTALNMVP-TRNAMWSVVCALNSFVHAWMYAYYAFP--RFSVLRRTKVWLTW---AQMVQHMIVLASATYVVYQSRTGAECHNNTTPILAGLGLYLMYLVFFALFYRRTYL 1864
H++ + +DPVF + TF SK E+ DTA +V + +P+ +L + HH + + T + T N W + +NSFVHAWMY+YYA RF++ + +++T +QMV I+ ASA Y V+ ++ ECH I + +YL Y + FA F+++ YL
Sbjct: 103 HSICIPSHLTQDPVFGFWSWTFALSKLVEFGDTAFIVLRKQPLIFLHWYHHVTVLLYTWFSYAEATGNGKWFGL--VNSFVHAWMYSYYALKAMRFNIPKWVAMFVTTLQLSQMVVGCILTASAYYYVHSAQV--ECHVTPLNIKLAMLMYLSYFILFARFFQQAYL 265
BLAST of mRNA_E-siliculosus-1a_F_contig127.1660.1 vs. uniprot
Match: A0A507C8Y6_9FUNG (Elongation of fatty acids protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C8Y6_9FUNG) HSP 1 Score: 89.0 bits (219), Expect = 2.870e-15 Identity = 56/206 (27.18%), Postives = 106/206 (51.46%), Query Frame = 2
Query: 1295 HNILLALTSAAMLVGIIRSCVTSRKTSSVHAMLCGAFDEEDPVFDLTAKTFFWSKAWEWVDTAILVAKGKPVSWLQYTHHASTAILTALNMVPTRNAMWSVVCALNSFVHAWMYAYYAFPRFSVLRRTKVWLTWAQMVQHMIVLASATYVVYQSRTG---------------AECHNNTTPILAGLGLYLM--YLVFFALFYRRTY 1861
HN+++++ SA + V I+ + ++ +C + P +L F K WE++DTA +V + +P+ +L HH++TA++ + +V ++++W + +N FVH MY Y+A S+ K +LT Q++Q ++ LA ++VY ++C++ + AG+ +++ YLV F FYRRTY
Sbjct: 72 HNLIMSVASAILFVLIMEPLIPMLYERGLNYSVCNK-EAYTPRLELLYYFNFLFKIWEFIDTAFIVLRKRPLEFLHVYHHSATALMAFMFVVKPQSSLWFYIL-INLFVHVLMYYYFAVTALSIKIWWKKYLTTMQIIQFVVDLALIGFLVYNVFAADLFPWIVTDYGFPVISDCYSADPHLHAGVASFVLFSYLVLFMDFYRRTY 275
BLAST of mRNA_E-siliculosus-1a_F_contig127.1660.1 vs. uniprot
Match: A0A6P5HY12_BOMTE (Elongation of very long chain fatty acids protein n=1 Tax=Bombus terrestris TaxID=30195 RepID=A0A6P5HY12_BOMTE) HSP 1 Score: 78.6 bits (192), Expect = 5.160e-12 Identity = 51/163 (31.29%), Postives = 85/163 (52.15%), Query Frame = 2
Query: 1391 LCGAFDEEDPVFDLTAKTFFWSKAWEWVDTAILVAKGKPVSWLQYTHHASTAILTALNMVPTRN-AMWSVVCALNSFVHAWMYAYYAFP--RFSVLRRTKVWLTWAQMVQHM--IVLASATYVVYQSRTGAECHNNTTPILAGLGLYLMYLVFFALFYRRTYL 1864
+C ++ DPV F SK E+ DT +V + +P+ +L + HH + + + L + + W+ CA+N FVH+WMY+YYA RF++ R + +T Q +Q + +A+ TY Y +CH + I GL LY Y + F+ F+++ YL
Sbjct: 105 VCISYITYDPVMTFWTLMFIVSKIVEFGDTVFIVLRKQPLKFLHWYHHITVLLYSWLCFIENAPYSRWN--CAINYFVHSWMYSYYALKVMRFNLPRWFAMLITTLQTLQMVWGCFIATMTYN-YIRNDQIDCHVKSYNIKIGLLLYFSYFILFSRFFKQAYL 264
BLAST of mRNA_E-siliculosus-1a_F_contig127.1660.1 vs. uniprot
Match: UPI0015C357DF (fatty acid elongase 3 n=1 Tax=Geosmithia morbida TaxID=1094350 RepID=UPI0015C357DF) HSP 1 Score: 78.2 bits (191), Expect = 1.330e-11 Identity = 63/210 (30.00%), Postives = 93/210 (44.29%), Query Frame = 2
Query: 1274 FRRLERGHNILLALTSAAMLVGIIRSCVTSRKTSSVHAMLCGAFDEEDPVFDLTAKTFFWSKAWEWVDTAILVAKGKPVSWLQYTHHASTAILTALNMVPTRNAMWSVVCALNSFVHAWMYAYYAFPRFSVLRRTKVW----LTWAQMVQHMIVLASATYVV---YQSRTG-------AECHNNTTPILAGLGLYLMYLVFFALFYRRTY 1861
F L + HN +L + S A+L + + + +CGA DP+ L + +K E +DTA L+ K KP+++L HH +TA+L +V + W V LN VH MY YY F R K+W +T Q+ Q +I LA Y Y + T C + ++G + YLV F +FY TY
Sbjct: 84 FNTLFKIHNFVLTVISGALLALFVEQLAPTLWRDGFYENICGADGWTDPLVTLYYLNYL-TKYIELIDTAFLMLKKKPLTFLHCYHHPATALLCYTQLVGRTSVSW-VPITLNLTVHVVMYWYY----FQSARGIKIWWKQYITILQIAQFIIDLAGVVYFASWDYWASTHFSWLPHVGTCAGHPYAAMSGCFILSSYLVLFVMFYFSTY 287 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig127.1660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig127.1660.1 >prot_E-siliculosus-1a_F_contig127.1660.1 ID=prot_E-siliculosus-1a_F_contig127.1660.1|Name=mRNA_E-siliculosus-1a_F_contig127.1660.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=613bp MAQQAFEDMRVVDLKVELKARGLPVSGLKAVLIQRLHDHDNSLVEKLAQAback to top mRNA from alignment at E-siliculosus-1a_F_contig127:50485..60727- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig127.1660.1 ID=mRNA_E-siliculosus-1a_F_contig127.1660.1|Name=mRNA_E-siliculosus-1a_F_contig127.1660.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=10243bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig127:50485..60727- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig127:50485..60727- >mRNA_E-siliculosus-1a_F_contig127.1660.1 ID=mRNA_E-siliculosus-1a_F_contig127.1660.1|Name=mRNA_E-siliculosus-1a_F_contig127.1660.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3678bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig127:50485..60727- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |