mRNA_E-siliculosus-1a_F_contig127.1657.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig127.1657.1
Unique NamemRNA_E-siliculosus-1a_F_contig127.1657.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig127.1657.1 vs. uniprot
Match: D7G1F2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1F2_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 9.200e-27
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 MASTLGVLDVLSKLREESERASTALTAQQETNRTLVQKCLEAETESGRTDEAKEALQLRKARYMYG 198
            MASTLGVLDVLSKLREESERASTALTAQQETNRTL+QKC+EAETESGRTDEAKEALQLRK +   G
Sbjct:    1 MASTLGVLDVLSKLREESERASTALTAQQETNRTLLQKCIEAETESGRTDEAKEALQLRKVQLEQG 66
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig127.1657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1F2_ECTSI9.200e-2789.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig127contigE-siliculosus-1a_F_contig127:22944..23309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size201
Model size201
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927793.1977596-CDS-E-siliculosus-1a_F_contig127:22943..230571622927793.1977596-CDS-E-siliculosus-1a_F_contig127:22943..23057Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig127 22944..23057 -
1696318681.5478342-CDS-E-siliculosus-1a_F_contig127:22943..230571696318681.5478342-CDS-E-siliculosus-1a_F_contig127:22943..23057Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig127 22944..23057 -
1622927793.2111232-CDS-E-siliculosus-1a_F_contig127:23222..233091622927793.2111232-CDS-E-siliculosus-1a_F_contig127:23222..23309Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig127 23223..23309 -
1696318681.5570805-CDS-E-siliculosus-1a_F_contig127:23222..233091696318681.5570805-CDS-E-siliculosus-1a_F_contig127:23222..23309Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig127 23223..23309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig127.1657.1prot_E-siliculosus-1a_F_contig127.1657.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig127 22944..23309 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig127.1657.1

>prot_E-siliculosus-1a_F_contig127.1657.1 ID=prot_E-siliculosus-1a_F_contig127.1657.1|Name=mRNA_E-siliculosus-1a_F_contig127.1657.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=67bp
MASTLGVLDVLSKLREESERASTALTAQQETNRTLVQKCLEAETESGRTD
EAKEALQLRKARYMYG*
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mRNA from alignment at E-siliculosus-1a_F_contig127:22944..23309-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig127.1657.1 ID=mRNA_E-siliculosus-1a_F_contig127.1657.1|Name=mRNA_E-siliculosus-1a_F_contig127.1657.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=366bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig127:22944..23309- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTTCCACCCTTGGCGTCCTTGACGTCCTCAGCAAACTCCGTGAGGA
ATCAGAGAGAGCTTCTACAGCCTTGACGGCTCAGCAGGTGATACGTTGAC
TATTTTCCGATGTGTGGATAACATTTCGACTACATCATCGAGGTTCGGAA
GAGTTGTTCAAGAGAGAGACAAGATGGACCCTCAAGTCTGATTGACCCCG
AGCCGATCATTGTCTTCCCTTGCTAACGAACAACACATCACATGCTCCCC
AGGAAACCAATCGAACGCTTGTTCAGAAATGTCTCGAGGCCGAGACGGAA
AGCGGCCGCACAGACGAAGCCAAAGAAGCACTCCAACTTCGAAAGGCGAG
ATATATGTATGGCTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig127:22944..23309-

>mRNA_E-siliculosus-1a_F_contig127.1657.1 ID=mRNA_E-siliculosus-1a_F_contig127.1657.1|Name=mRNA_E-siliculosus-1a_F_contig127.1657.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=402bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig127:22944..23309- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTTCCACCCTTGGCGTCCTTGACGTCCTCAGCAAACTCCGTGAGGA
ATCAGAGAGAGCTTCTACAGCCTTGACGGCTCAGCAGATGGCTTCCACCC
TTGGCGTCCTTGACGTCCTCAGCAAACTCCGTGAGGAATCAGAGAGAGCT
TCTACAGCCTTGACGGCTCAGCAGGAAACCAATCGAACGCTTGTTCAGAA
ATGTCTCGAGGCCGAGACGGAAAGCGGCCGCACAGACGAAGCCAAAGAAG
CACTCCAACTTCGAAAGGCGAGATATATGTATGGCTAGGAAACCAATCGA
ACGCTTGTTCAGAAATGTCTCGAGGCCGAGACGGAAAGCGGCCGCACAGA
CGAAGCCAAAGAAGCACTCCAACTTCGAAAGGCGAGATATATGTATGGCT
AG
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