mRNA_E-siliculosus-1a_F_contig127.1655.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig127.1655.1 vs. uniprot
Match: D7G1F1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1F1_ECTSI) HSP 1 Score: 783 bits (2023), Expect = 1.130e-281 Identity = 420/451 (93.13%), Postives = 428/451 (94.90%), Query Frame = 1
Query: 28 MAPSVCRVVCIAALVGLLNKVLPVPARAPAASAGGGVDGGRRKNAHHRCRQDHVAHSSTGCLTSNTATPAPTSGGVREGGRSRVVGARPAWLVGSGSGRGRGLPRRKNGSPSSEEARAGGRASSVVGLRGGSTAAGEGLEEGTADVVRSMQILVSTTKISSYIDARGEVAARSDWTVGKLKEELEKKFPGKIPASLQRLFKGTQLLPSSMTLEEASEGAEGPLSLLLDNAPPIDASRFDPDTAVPFSKDGQVEAFSACLAAQSTLQETLLAVMRGENSEDDAELSRSVKMKADFENTKALLQRTLDEVPDKTGDEEETFGVLHEALRPLAHRHVPLDVNWMQTAQYTIFTYICAQFGATGTIRRLATLMLIPMMLLAQTRTARVGAKIVRNLVAEVPVLTQLFLGLLQAPTQVIISVDPEAYTRGLYGPGGPKYGKEFLDEGGDEESEETG 1380
M PSVCRVVCIAALVGLLN+VLPVPARAPAAS V GRRKNAHHRCRQDHVAHSSTGCLTSNTATPAP SGGV E G SRVVGARPAWLVGSGS GLPRRK GS S++EARAG RASSVVGLRGGSTAAGEGLEEGTA VVRSMQILVSTTKISSYIDARGEVAARSDWTVGKLKEELEKKFPG+IPASLQRLFKGTQLLPSSMTLEEASEGAEGPLSLLLDNAPPIDASRFDPDTAVPFSKDGQVEAFSACLAAQSTLQETLLAVMRGENSEDDAELSRSVKMKADFENTKALLQRTLDEVPDKTGDEEETFG+LHEALRPLAHR LDVNWMQTAQYTIFTYICAQFGATGTIRRLATLMLIPMMLLAQTR+ARVGAK+VRNLVAEVPVLTQLFLGLLQAPTQVIISVDP+AYTRGLYGPGGPKY KEFLDEGGDEESEETG
Sbjct: 1 MTPSVCRVVCIAALVGLLNEVLPVPARAPAASXXXXVGRGRRKNAHHRCRQDHVAHSSTGCLTSNTATPAPASGGVGEDGGSRVVGARPAWLVGSGSXXXXGLPRRKKGSSSTQEARAGARASSVVGLRGGSTAAGEGLEEGTAGVVRSMQILVSTTKISSYIDARGEVAARSDWTVGKLKEELEKKFPGRIPASLQRLFKGTQLLPSSMTLEEASEGAEGPLSLLLDNAPPIDASRFDPDTAVPFSKDGQVEAFSACLAAQSTLQETLLAVMRGENSEDDAELSRSVKMKADFENTKALLQRTLDEVPDKTGDEEETFGILHEALRPLAHR---LDVNWMQTAQYTIFTYICAQFGATGTIRRLATLMLIPMMLLAQTRSARVGAKMVRNLVAEVPVLTQLFLGLLQAPTQVIISVDPKAYTRGLYGPGGPKYDKEFLDEGGDEESEETG 448
BLAST of mRNA_E-siliculosus-1a_F_contig127.1655.1 vs. uniprot
Match: A0A836CA69_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA69_9STRA) HSP 1 Score: 172 bits (436), Expect = 8.810e-45 Identity = 107/312 (34.29%), Postives = 169/312 (54.17%), Query Frame = 1
Query: 445 EEGTADVVRSMQILVSTTKISSYIDARGEVAARSDWTVGKLKEELEKKFPGKIPASLQRLFKGTQLLPSSMTLEEASEGAEGPLSLLLDNAPPIDASRFDPDTAVPFSKDGQVEAFSACLAAQSTLQETLLAVMRGENSEDDAELSRS-----VKMKADFENTKALLQRTLDEVPDKTGDEEETF--------GVLHEALRPLAHRHVPLDVNWMQTAQYTIFTYICAQFGATGTIRRLATLMLIPMMLLAQTRTARVGAKIVRNLVAEVPVLTQLFLGLLQAPTQVIISVDPEAYTRGLYGPGGPKYGKEF 1341
EE A + +S+ ++V+T K+S ++D R ++ TV +LK++L + FPGK P +QR+F G LL M L E ++ A G + L+LD PPID FDP TAVP ++D Q+EA+ A +AA + LQ + G+ S + L+ S ++M++ + LQ + G + G LHE LRP+A + LDV+W + F +CA+FGA R L+ I ++ +A+ R + G K+ N + ++P +T + + LL AP QV++ D +AY + LYG GPK+ EF
Sbjct: 15 EELKARMAKSVDMVVTTLKLSGFVDQRCQLQLPGTATVRQLKDKLAQNFPGKPPVPVQRVFSGLTLLSDDMQLYEIAQSAPGRVQLVLDMPPPIDPEAFDPATAVPSNRDSQLEAYCANMAALTQLQSGARRALAGDKSPFSSPLAPSDMTCALEMQSHMSAVQGFLQGSYAPKEGDGGVRDGELPLPPLPPAGPLHEVLRPVA---MQLDVDWKNSLMMAFFVALCAKFGAFSPTLRAMRLLGIALIFVAKLRPVKYGIKVAYNKLRDLPFITDIIVALLPAPDQVLLQFDEKAYVQKLYGDAGPKFRPEF 323
BLAST of mRNA_E-siliculosus-1a_F_contig127.1655.1 vs. uniprot
Match: A0A0G4FT54_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FT54_VITBC) HSP 1 Score: 63.2 bits (152), Expect = 6.900e-7 Identity = 84/338 (24.85%), Postives = 145/338 (42.90%), Query Frame = 1
Query: 475 MQILVSTTKISSYIDARGEVA-ARSDWTVGKLKEELEKKFPGKIPASLQRLFKGTQLLPSS-MTLEEASE--GAEGPLSLLLDNAPPIDASRFDPDTAVPFSKDGQVEAFSACLAA---QSTLQETLLAVMRGENSEDDAEL--------SRSVKMKADFENTKALLQRTLDEV-------------PDKTGDEEE----------------TFGVLHEALRPLA-----HRHVPL--DVNWMQTAQYTIFTYICAQFGATGTI----------RRLATLMLIPMMLLAQTRTARVGAKIVRNLVAEVPVLTQLFLGLLQAPTQVIISVDPEAYTRGL 1305
++++V+T S Y+D + + + D V LK +E+ +PGK PA+LQRLF G+Q L M L + + A+ P ++LLD PP+D ++ + +++ + A SA LAA + L GE+ D L S V + A F +T L+ +++ P+ + EE V+H RP + HR V L D++W T + + +FG +G +R LM +P++ L Q+R + AK++ NL+ + LL AP Q +++ + + + L
Sbjct: 54 VRLVVTTASGSRYLDHKQLITLSPHDTLVRSLKAAIEQSYPGKPPATLQRLFVGSQALKDDDMDLADVIDDLSADEPATVLLDMVPPVDQTQGKMVVSK-MNEEEKRAALSAHLAALQYYAALWRRASGADSGEDVSDTDGLGDELKGDESSGVMLIARFRDTYRALEEAMEQQHMTKQKKARPPTSPEGSQQNEEGESTDHPTAPPPLQAFPEAVVHYPRRPRSLQGRLHRFVQLNLDIHWASTIRLAALLLVLWRFGPSGGSSSGSTPSEEQKRRLFLMCVPLVFLVQSRPVKFLAKLLFNLIPPSSYWDGV-ASLLPAPQQELLTFNQDKFVERL 389 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig127.1655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig127.1655.1 >prot_E-siliculosus-1a_F_contig127.1655.1 ID=prot_E-siliculosus-1a_F_contig127.1655.1|Name=mRNA_E-siliculosus-1a_F_contig127.1655.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=452bp MAPSVCRVVCIAALVGLLNKVLPVPARAPAASAGGGVDGGRRKNAHHRCRback to top mRNA from alignment at E-siliculosus-1a_F_contig127:8518..17592+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig127.1655.1 ID=mRNA_E-siliculosus-1a_F_contig127.1655.1|Name=mRNA_E-siliculosus-1a_F_contig127.1655.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=9075bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig127:8518..17592+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig127:8518..17592+ >mRNA_E-siliculosus-1a_F_contig127.1655.1 ID=mRNA_E-siliculosus-1a_F_contig127.1655.1|Name=mRNA_E-siliculosus-1a_F_contig127.1655.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2712bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig127:8518..17592+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |