mRNA_E-siliculosus-1a_F_contig12692.1653.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12692.1653.1
Unique NamemRNA_E-siliculosus-1a_F_contig12692.1653.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12692.1653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12692contigE-siliculosus-1a_F_contig12692:813..1437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size417
Model size625
Exons1
Hectar predicted targeting categorymitochondrion
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927792.622946-UTR-E-siliculosus-1a_F_contig12692:812..8221622927792.622946-UTR-E-siliculosus-1a_F_contig12692:812..822Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12692 813..822 +
1696318681.245534-UTR-E-siliculosus-1a_F_contig12692:812..8221696318681.245534-UTR-E-siliculosus-1a_F_contig12692:812..822Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12692 813..822 +
1622927792.6435716-UTR-E-siliculosus-1a_F_contig12692:1239..14371622927792.6435716-UTR-E-siliculosus-1a_F_contig12692:1239..1437Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12692 1240..1437 +
1696318681.2669473-UTR-E-siliculosus-1a_F_contig12692:1239..14371696318681.2669473-UTR-E-siliculosus-1a_F_contig12692:1239..1437Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12692 1240..1437 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927792.6331952-CDS-E-siliculosus-1a_F_contig12692:822..12391622927792.6331952-CDS-E-siliculosus-1a_F_contig12692:822..1239Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12692 823..1239 +
1696318681.2568812-CDS-E-siliculosus-1a_F_contig12692:822..12391696318681.2568812-CDS-E-siliculosus-1a_F_contig12692:822..1239Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12692 823..1239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12692.1653.1prot_E-siliculosus-1a_F_contig12692.1653.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12692 823..1239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12692.1653.1

>prot_E-siliculosus-1a_F_contig12692.1653.1 ID=prot_E-siliculosus-1a_F_contig12692.1653.1|Name=mRNA_E-siliculosus-1a_F_contig12692.1653.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=139bp
MVLFQTVQPHPMLRRSTSVSLHSSDAHVCVVYNTKILSRETRTMRLAVDN
EERMWDICSHQLPGFGPVLETLHPASFQRSTYHMRFYRHTCCKEICILQH
QQHSTGTYHCCSCTLQKTRLLVSTHEHPVKLCYLTCVV*
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mRNA from alignment at E-siliculosus-1a_F_contig12692:813..1437+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12692.1653.1 ID=mRNA_E-siliculosus-1a_F_contig12692.1653.1|Name=mRNA_E-siliculosus-1a_F_contig12692.1653.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=625bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12692:813..1437+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACCGATCGTCATGGTCCTGTTTCAAACTGTGCAACCACATCCAATGCTTC
GGCGTTCCACGTCTGTTTCTCTTCATTCATCCGACGCACATGTATGTGTC
GTCTACAACACCAAAATCCTATCCAGAGAGACGCGGACCATGCGGCTTGC
TGTAGACAACGAAGAGCGCATGTGGGATATCTGTTCCCACCAACTTCCCG
GCTTCGGTCCGGTGTTGGAAACATTGCATCCGGCTTCCTTCCAACGTTCC
ACATACCACATGCGCTTCTACCGACATACATGCTGCAAGGAAATATGCAT
ACTGCAACATCAACAACATTCTACAGGGACGTACCACTGCTGCAGCTGTA
CACTACAAAAAACGCGACTCCTTGTGTCCACACATGAGCACCCTGTCAAG
CTGTGTTATCTCACGTGTGTCGTGTGATCCACAGCAACGGCGGATATGAC
AAGCATACTCGCCCAATTAACAATCAAACATCATCATGATCTTCCCGGTT
CAATAGCATTCAAACACCATTTGCAAAAGAAACACGGAATGGTTCACAAC
AAGCAACTCGTCATCTACCGATACGCGTCGTCCACAGCCGGAACGCTGCA
GTCGCCACCACCACGTGGCGCCCTA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12692:813..1437+

>mRNA_E-siliculosus-1a_F_contig12692.1653.1 ID=mRNA_E-siliculosus-1a_F_contig12692.1653.1|Name=mRNA_E-siliculosus-1a_F_contig12692.1653.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=834bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12692:813..1437+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTCCTGTTTCAAACTGTGCAACCACATCCAATGCTTCGGCGTTCCAC
GTCTGTTTCTCTTCATTCATCCGACGCACATGTATGTGTCGTCTACAACA
CCAAAATCCTATCCAGAGAGACGCGGACCATGCGGCTTGCTGTAGACAAC
GAAGAGCGCATGTGGGATATCTGTTCCCACCAACTTCCCGGCTTCGGTCC
GGTGTTGGAAACATTGCATCCGGCTTCCTTCCAACGTTCCACATACCACA
TGCGCTTCTACCGACATACATGCTGCAAGGAAATATGCATACTGCAACAT
CAACAACATTCTACAGGGACGTACCACTGCTGCAGCTGTACACTACAAAA
AACGCGACTCCTTGTGTCCACACATGAGCACCCTGTCAAGCTGTGTTATC
TCACGTGTGTCGTGTGAATGGTCCTGTTTCAAACTGTGCAACCACATCCA
ATGCTTCGGCGTTCCACGTCTGTTTCTCTTCATTCATCCGACGCACATGT
ATGTGTCGTCTACAACACCAAAATCCTATCCAGAGAGACGCGGACCATGC
GGCTTGCTGTAGACAACGAAGAGCGCATGTGGGATATCTGTTCCCACCAA
CTTCCCGGCTTCGGTCCGGTGTTGGAAACATTGCATCCGGCTTCCTTCCA
ACGTTCCACATACCACATGCGCTTCTACCGACATACATGCTGCAAGGAAA
TATGCATACTGCAACATCAACAACATTCTACAGGGACGTACCACTGCTGC
AGCTGTACACTACAAAAAACGCGACTCCTTGTGTCCACACATGAGCACCC
TGTCAAGCTGTGTTATCTCACGTGTGTCGTGTGA
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