mRNA_E-siliculosus-1a_F_contig1269.1651.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1651.1 vs. uniprot
Match: A0A6H5L3X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X2_9PHAE) HSP 1 Score: 325 bits (832), Expect = 1.640e-108 Identity = 170/195 (87.18%), Postives = 174/195 (89.23%), Query Frame = 3
Query: 96 MKLRLAQARCLQALRVGNPSMSGTLWTSNVPSSAAVLLGQEYSGRVFSRGLKGQPDCKVKTDELAAPERSTPARLVVTHSS----------YMDGLIPLLDRFVADPDAVNSVSSVIPGRIYVVKGRSELFKMTVRDTTNGFKALARKGTLGQEVFISTTKMDLDDVKAALNRAAGFDLEKGGSRREQKAGRKRR 650
M L+L QARCLQALRVGNPSMSGTLWT ++PSSAAVLLGQE RVFSRGLKGQPDC VKT EL APER TPARLVVTHSS YMDGLIPLLDRF+ADPDAVNSVSSVIPGRIYVVKGRSELFKMTVRDTTNGFKALARKGTLGQEVFISTTKMDL DVKAALNRAAGFDLEKGGSRREQKAGRKRR
Sbjct: 1 MILQLTQARCLQALRVGNPSMSGTLWTPSLPSSAAVLLGQECGSRVFSRGLKGQPDCDVKTHELVAPERPTPARLVVTHSSECAPARAYPCYMDGLIPLLDRFIADPDAVNSVSSVIPGRIYVVKGRSELFKMTVRDTTNGFKALARKGTLGQEVFISTTKMDLGDVKAALNRAAGFDLEKGGSRREQKAGRKRR 195
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1651.1 vs. uniprot
Match: D7FP95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP95_ECTSI) HSP 1 Score: 196 bits (498), Expect = 2.360e-59 Identity = 100/103 (97.09%), Postives = 102/103 (99.03%), Query Frame = 3
Query: 342 MDGLIPLLDRFVADPDAVNSVSSVIPGRIYVVKGRSELFKMTVRDTTNGFKALARKGTLGQEVFISTTKMDLDDVKAALNRAAGFDLEKGGSRREQKAGRKRR 650
MDGLIPLLDRF+ DPDAVNSVSSVIPGRIYVVKGRSELFKMTVRDTTNGFKALARKGTLGQEVFISTTKM+LDDVKAALNRAAGFDLEKGGSRREQKAGRKRR
Sbjct: 1 MDGLIPLLDRFITDPDAVNSVSSVIPGRIYVVKGRSELFKMTVRDTTNGFKALARKGTLGQEVFISTTKMNLDDVKAALNRAAGFDLEKGGSRREQKAGRKRR 103
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1651.1 vs. uniprot
Match: A0A0A2A5S7_PROMR (Uncharacterized protein n=1 Tax=Prochlorococcus marinus str. MIT 9201 TaxID=93057 RepID=A0A0A2A5S7_PROMR) HSP 1 Score: 69.7 bits (169), Expect = 2.320e-11 Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 3
Query: 315 RLVVTHSSYMDGLIPLLDRFVADPDAVNSVSSVIPGRIYVVKGRSE--LFKMTVRDTTNGFKALARKGTLGQEVFIST--TKMDLDDVKAALNR 584
RLV+ HS+ ++GLIP+L R D ++ +V P I VKG++ +F+++V+ T NG+KA+ARKGT QEVFIST +K DL + NR
Sbjct: 3 RLVLNHSTNIEGLIPILKRLALD----TNIKTVTPAVISRVKGKTSKLIFRISVK-TINGYKAIARKGTTAQEVFISTDLSKADLKQIIDTYNR 91
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1651.1 vs. uniprot
Match: A0A0A2BME1_9CYAN (Uncharacterized protein n=2 Tax=Prochlorococcus TaxID=1218 RepID=A0A0A2BME1_9CYAN) HSP 1 Score: 67.0 bits (162), Expect = 2.490e-10 Identity = 40/93 (43.01%), Postives = 61/93 (65.59%), Query Frame = 3
Query: 315 RLVVTHSSYMDGLIPLLDRFVADPDAVNSVSSVIPGRIYVVKGRSELFKMTV-RDTTNGFKALARKGTLGQEVFIST--TKMDLDD-VKAALN 581
RLV+THSSY++GLI LL + V D ++ ++ PG I VKG+S FK+ + R+ G+K ARKG QEV+I T +K++L + +++ LN
Sbjct: 10 RLVLTHSSYVEGLISLLKKIVND----KNIKTITPGAITRVKGKSVSFKLVISREVKGGYKLNARKGRSAQEVYILTDYSKIELTEKIESLLN 98
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1651.1 vs. uniprot
Match: A0A326QPZ9_9CYAN (Uncharacterized protein n=2 Tax=Synechococcales TaxID=1890424 RepID=A0A326QPZ9_9CYAN) HSP 1 Score: 66.6 bits (161), Expect = 2.920e-10 Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 3
Query: 315 RLVVTHSSYMDGLIPLLDRFVADPDAVNSVSSVIPGRIYVVKGRSELFKMTVR-DTTNGFKALARKGTLGQEVFISTT 545
R+V+THS+Y++GLIP+L R A + V +V P I VKGRS + ++ V GFK LARKGT QEVF+ TT
Sbjct: 3 RVVITHSTYIEGLIPVLRRLAAG----DGVDTVTPAVITRVKGRSPVLRLKVSAPIRGGFKLLARKGTTAQEVFVVTT 76
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1651.1 vs. uniprot
Match: A0A4P7ZS28_9SYNE (Uncharacterized protein n=3 Tax=Synechococcaceae TaxID=1890426 RepID=A0A4P7ZS28_9SYNE) HSP 1 Score: 66.6 bits (161), Expect = 2.920e-10 Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 3
Query: 315 RLVVTHSSYMDGLIPLLDRFVADPDAVNSVSSVIPGRIYVVKGRSELFKMTVRDT-TNGFKALARKGTLGQEVFIST 542
RLV+THS+Y++GLIPLL R V DP ++ ++ P I VKGRS ++ V T G+K +AR+G+ QEVF+ T
Sbjct: 3 RLVITHSTYLEGLIPLLKRLVRDP----AIDTITPAVIARVKGRSPELRLRVSTPITGGWKLVARRGSSAQEVFVVT 75
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1651.1 vs. uniprot
Match: UPI001AD99C8E (DUF2103 domain-containing protein n=1 Tax=Prochlorococcus marinus TaxID=1219 RepID=UPI001AD99C8E) HSP 1 Score: 66.2 bits (160), Expect = 4.000e-10 Identity = 42/93 (45.16%), Postives = 61/93 (65.59%), Query Frame = 3
Query: 315 RLVVTHSSYMDGLIPLLDRFVADPDAVN-SVSSVIPGRIYVVKGRSELFKMTVR---DTTNGFKALARKGTLGQEVFISTTKMDLDDVKAALN 581
RLV+ HS++++GLIPLL + A+N ++ +V P I V+GRS K+T+R T NGFKA+ARKG QEVFIST + D++K ++
Sbjct: 3 RLVLNHSTHIEGLIPLLQKL-----ALNINIKTVTPAVISRVRGRSS--KLTIRLSVKTINGFKAIARKGRTAQEVFISTD-LSKDELKQIID 87
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1651.1 vs. uniprot
Match: A0A358BXE8_9CYAN (Uncharacterized protein n=3 Tax=Synechococcales TaxID=1890424 RepID=A0A358BXE8_9CYAN) HSP 1 Score: 65.9 bits (159), Expect = 5.350e-10 Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 3
Query: 315 RLVVTHSSYMDGLIPLLDRFVADPDAVNSVSSVIPGRIYVVKGRSELFKMTVR-DTTNGFKALARKGTLGQEVFIST--TKMDLDDVKAALNR 584
RLV+THS+Y+DGLIPLL DP ++ ++ P I VKGR E K+ V G K LAR+G+ QEVFI T +K +L LNR
Sbjct: 3 RLVITHSTYLDGLIPLLKILANDP----AIDTITPAVICRVKGRCEGLKLRVSCGLKGGHKVLARRGSSAQEVFIVTQMSKSELQQRLEQLNR 91
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1651.1 vs. uniprot
Match: K9P575_CYAGP (Putative metal-binding protein (DUF2103) n=1 Tax=Cyanobium gracile (strain ATCC 27147 / PCC 6307) TaxID=292564 RepID=K9P575_CYAGP) HSP 1 Score: 65.1 bits (157), Expect = 1.010e-9 Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 3
Query: 312 ARLVVTHSSYMDGLIPLLDRFVADPDAVNSVSSVIPGRIYVVKGRSELFKMTVRDT-TNGFKALARKGTLGQEVFISTTKMDLDDVKAALNR 584
ARLV+THS+Y++GLIPLL R P+ + ++ P I V+GRS ++ V T G K LAR+G+ QEVF+ T++ D ++ L+R
Sbjct: 2 ARLVITHSTYVEGLIPLLRRLATLPE----IDTITPAVITRVRGRSVGLRLRVSTPITGGHKLLARRGSTAQEVFV-VTRLSRDQLQEELDR 88
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1651.1 vs. uniprot
Match: A0A4P5VE54_9CYAN (Uncharacterized protein n=1 Tax=Cyanobium sp. TaxID=2164130 RepID=A0A4P5VE54_9CYAN) HSP 1 Score: 64.7 bits (156), Expect = 1.380e-9 Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 3
Query: 315 RLVVTHSSYMDGLIPLLDRFVADPDAVNSVSSVIPGRIYVVKGRSELFKMTVRDT-TNGFKALARKGTLGQEVFISTTKMDLDDVKAALNRAAG 593
RLV+THS+Y++GLIPLL + +++V P I V+GRSE ++ V T GFK +AR+G QEVF+ T D ++ L+ AG
Sbjct: 3 RLVITHSTYLEGLIPLLKALARE----GGINTVTPAVISRVRGRSESLRLRVSTPITGGFKVMARRGASAQEVFV-VTDWDRQRLQERLDHLAG 91 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1269.1651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1269.1651.1 >prot_E-siliculosus-1a_F_contig1269.1651.1 ID=prot_E-siliculosus-1a_F_contig1269.1651.1|Name=mRNA_E-siliculosus-1a_F_contig1269.1651.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=186bp MKLRLAQARCLQALRVGNPSMSGTLWTSNVPSSAAVLLGQEYSGRVFSRGback to top mRNA from alignment at E-siliculosus-1a_F_contig1269:31594..34276+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1269.1651.1 ID=mRNA_E-siliculosus-1a_F_contig1269.1651.1|Name=mRNA_E-siliculosus-1a_F_contig1269.1651.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2683bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1269:31594..34276+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1269:31594..34276+ >mRNA_E-siliculosus-1a_F_contig1269.1651.1 ID=mRNA_E-siliculosus-1a_F_contig1269.1651.1|Name=mRNA_E-siliculosus-1a_F_contig1269.1651.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1116bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1269:31594..34276+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |