mRNA_E-siliculosus-1a_F_contig1268.1645.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1268.1645.1
Unique NamemRNA_E-siliculosus-1a_F_contig1268.1645.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1268.1645.1 vs. uniprot
Match: D8LLF4_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLF4_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 1.610e-98
Identity = 141/146 (96.58%), Postives = 144/146 (98.63%), Query Frame = 3 
Query:  156 MSFFTKGLAGIFNNGKARKKDEGKGSDKKKDKKDEGSWEKLTDVYGRTYWQHRKTGEWHFGYGGGFVPPVGTVNPSPMGYPGGPVFTPSPVPGGTLFPVAVAGPPGKKEEKKEKGKGWWETMYDEDGDKYWEHTVTKKTTYKDPYY 593
            MSFFTKGLAGIFNNGKARKKDEGKGSDKKKDKKDEGSWEKLTDVYGRTYWQH KTGEWHFGYGGGFVPPVGTVNPSPMGYPGGPVFTPSPVPGGTLFPVAVAGPPGKK+EKKEKGKGWWET YDE+GD+YWEHTVTKKTTYKDPYY
Sbjct:    1 MSFFTKGLAGIFNNGKARKKDEGKGSDKKKDKKDEGSWEKLTDVYGRTYWQHSKTGEWHFGYGGGFVPPVGTVNPSPMGYPGGPVFTPSPVPGGTLFPVAVAGPPGKKKEKKEKGKGWWETKYDEEGDRYWEHTVTKKTTYKDPYY 146
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BLAST of mRNA_E-siliculosus-1a_F_contig1268.1645.1 vs. uniprot
Match: D8LLF3_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLF3_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 2.340e-57
Identity = 103/159 (64.78%), Postives = 113/159 (71.07%), Query Frame = 3 
Query:  156 MSFFTKGLAGIFNNGKAR--KKDEGKGSDK------KKDKKDEGSWEKLTDVYGRTYWQHRKTGEWHFGYGGGFVPPVGTVNPSPMGYPGGPVFTPSPVPGGTLFPVAVAGPPGKKEEKKEK-----GKGWWETMYDEDGDKYWEHTVTKKTTYKDPYY 593
            MSFF+ G A + NN + +  KK    G+DK      K +KKDEG W+ LTD YGRTYWQH  TGEW +G GGG V PVGTVNPSPMGYPGGPVFTPSPVPGG L+P AVA  P K            GKGWWET YDEDGD+YWEHTVTKKTTYKDPYY
Sbjct:    1 MSFFSNGFAVLANNRRRKEAKKAAKNGADKSAQSSDKMEKKDEGRWDMLTDAYGRTYWQHSITGEWTYGCGGGLVSPVGTVNPSPMGYPGGPVFTPSPVPGGALYPFAVAPHPKKXXXXXXXXXXXXGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 159
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BLAST of mRNA_E-siliculosus-1a_F_contig1268.1645.1 vs. uniprot
Match: D8LLG2_ECTSI (WW domain-containing protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LLG2_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 3.030e-44
Identity = 95/171 (55.56%), Postives = 106/171 (61.99%), Query Frame = 3 
Query:  156 MSFFTKGLAGIFNNG--KARKKDEGKGSDK--------------KKDKKDEGSWEKLTDVYGRTYWQHRKTGEWHFGYGGGF-VPPVGTVNPSPMGYPGGPVFTPSPVPGGTLFPVAVAGPP--------GKKEEKKEKGKGWWETMYDEDGDKYWEHTVTKKTTYKDPYY 593
            MSFFT G A + NN   KA KK   K +DK              K+++KDEG W+ LTDVYGR YWQH  TGEW + YGGG   PPV  V P+PM  P G VFTP PV        A   PP         K++EKKEKGKGWWET YDEDGD+YWEHTVTKKTTYKDPYY
Sbjct:    1 MSFFTSGFATMVNNRRLKAAKKAGTKNADKNVESSDKEEKNDCGKEEEKDEGKWDMLTDVYGRAYWQHSVTGEWAYVYGGGLSAPPVVAVGPTPMVSPHGVVFTPPPV------YAAAPNPPLPTKKKDGDKQDEKKEKGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 165
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BLAST of mRNA_E-siliculosus-1a_F_contig1268.1645.1 vs. uniprot
Match: D8LLG0_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG0_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 3.780e-38
Identity = 88/172 (51.16%), Postives = 99/172 (57.56%), Query Frame = 3 
Query:  156 MSFFTKGLAGIFNNG--KARKKDEGKGSDK--------------KKDKKDEGSWEKLTDVYGRTYWQHRKTGEWHFGYGGGF-VPPVGTVNPSPMGYPGGPVFTPS---------PVPGGTLFPVAVAGPPGKKEEKKEKGKGWWETMYDEDGDKYWEHTVTKKTTYKDPYY 593
            MSFFT G A + NN   KA KK   K +DK              K+++KDEG W+ LTDVYGR YWQH  TGEW + YGGG   PPV  V+P+PM  P G VFTP          P+P                    EKGKGWWET YDEDGD+YWEHTVTKKTTYKDPYY
Sbjct:    1 MSFFTSGFATMVNNRRLKAAKKAGTKNADKNVESSDNEEKNDCGKEEEKDEGKWDMLTDVYGRAYWQHNVTGEWAYVYGGGLSAPPVVAVSPTPMACPHGVVFTPPXXXXXXXXXPLPTKXXXXXXXX-------XXXEKGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 165
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BLAST of mRNA_E-siliculosus-1a_F_contig1268.1645.1 vs. uniprot
Match: A0A6H5KRF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF5_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.090e-21
Identity = 58/106 (54.72%), Postives = 66/106 (62.26%), Query Frame = 3 
Query:  306 QHRKTGEWHFGYGGGF-VPPVGTVNPSPMGYPGGPVFTPSPVPGGTLFPVA------VAGPP---GKKEEKKEKGKGWWETMYDEDGDKYWEHTVTKKTTYKDPYY 593
            QH  TGEW + YGGG   PPV  V+P+ + YP G V  P  V      P        VAG      +K+EKKEKGKGWWET  D+DGD+YWEHTVTKK TYKDPYY
Sbjct:   17 QHSVTGEWAYVYGGGLSAPPVVAVSPTSVVYPHGVVVMPXXVYAAAPNPPLPAKKKDVAGGQKDCDEKDEKKEKGKGWWETKSDKDGDRYWEHTVTKKITYKDPYY 122
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1268.1645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LLF4_ECTSI1.610e-9896.58WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
D8LLF3_ECTSI2.340e-5764.78WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
D8LLG2_ECTSI3.030e-4455.56WW domain-containing protein n=4 Tax=Ectocarpus Ta... [more]
D8LLG0_ECTSI3.780e-3851.16WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KRF5_9PHAE2.090e-2154.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1268contigE-siliculosus-1a_F_contig1268:17766..19806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size561
Model size1047
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1268.1645.1prot_E-siliculosus-1a_F_contig1268.1645.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1268 17766..19321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927791.1646109-CDS-E-siliculosus-1a_F_contig1268:17765..179811622927791.1646109-CDS-E-siliculosus-1a_F_contig1268:17765..17981Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1268 17766..17981 +
1696318680.5315416-CDS-E-siliculosus-1a_F_contig1268:17765..179811696318680.5315416-CDS-E-siliculosus-1a_F_contig1268:17765..17981Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1268 17766..17981 +
1622927791.1958244-CDS-E-siliculosus-1a_F_contig1268:18245..183331622927791.1958244-CDS-E-siliculosus-1a_F_contig1268:18245..18333Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1268 18246..18333 +
1696318680.5413299-CDS-E-siliculosus-1a_F_contig1268:18245..183331696318680.5413299-CDS-E-siliculosus-1a_F_contig1268:18245..18333Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1268 18246..18333 +
1622927791.219151-CDS-E-siliculosus-1a_F_contig1268:19064..193211622927791.219151-CDS-E-siliculosus-1a_F_contig1268:19064..19321Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1268 19065..19321 +
1696318680.5504034-CDS-E-siliculosus-1a_F_contig1268:19064..193211696318680.5504034-CDS-E-siliculosus-1a_F_contig1268:19064..19321Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1268 19065..19321 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927791.2406077-UTR-E-siliculosus-1a_F_contig1268:19321..198061622927791.2406077-UTR-E-siliculosus-1a_F_contig1268:19321..19806Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1268 19322..19806 +
1696318680.5593235-UTR-E-siliculosus-1a_F_contig1268:19321..198061696318680.5593235-UTR-E-siliculosus-1a_F_contig1268:19321..19806Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1268 19322..19806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1268.1645.1

>prot_E-siliculosus-1a_F_contig1268.1645.1 ID=prot_E-siliculosus-1a_F_contig1268.1645.1|Name=mRNA_E-siliculosus-1a_F_contig1268.1645.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=187bp
TTHIGKTQRTQPQQSKASRNSASSVRRTCSVHFTTLAVAAHQQQHSVTGD
RACRSSRKDSRASSTTARLARKTKGRALTRRRTRRTKGAGRSSRTSTAAR
TGNTGRQASGTSATVAALSLPLGRSTRPPWATPAARSSRLRRCPAAHSSL
SLSLAPPERRRRRRRRARGGGRRCTTRTGTSTGSTR*
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mRNA from alignment at E-siliculosus-1a_F_contig1268:17766..19806+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1268.1645.1 ID=mRNA_E-siliculosus-1a_F_contig1268.1645.1|Name=mRNA_E-siliculosus-1a_F_contig1268.1645.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2041bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1268:17766..19806+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACAACTCACATCGGCAAGACGCAACGCACCCAACCGCAACAGAGCAAAGC
CTCGCGAAACTCCGCAAGCAGTGTACGACGCACGTGCTCAGTACACTTCA
CCACCCTAGCCGTCGCAGCGCATCAGCAGCAGCACTCAGTAACGGGTGAC
AGAGCATGTCGTTCTTCACGAAAGGACTCGCGGGCATCTTCAACAACGGC
AAGGCTCGCAAGAAAGGTGAGAGCGGGGATCGACGAGTTGAAGTGCGTCG
GCGATTGCTGTGCATCTCTCTGGCGTTGCTGCTGCCCCTCACTGCTGCTG
CTTCAGGCTCATTCGCGCGGTTGGAGCCTCTTGCGGCTGTGGGTGGCTGT
GTGTCCTGTGGTTAGTTGCTCCACGCGGCGGTTTCCTCAAAATTCCAAAA
TGCGTTGACCCGCGTTGTGGCCGCTCCTGACCCCGTCCTCCGTCGCTCTC
TCTCCACCCCCTGCGCGCTCTCACACACAGACGAAGGGAAGGGCTCTGAC
AAGAAGAAGGACAAGAAGGACGAAGGGAGCTGGGAGAAGCTCACGGACGT
CTACGGCCGCACGTACTGGTGAGAGACGACGAGACACAGCAGCAGCGATG
CGAAAGTGGCGGTTTACCTTTGGTCAGCAGCATTTCTAGCCTCGGAATTC
CGAGCTTTTTTTCAACCAGTGCTGCCGGTGTGCCAGAGTACAGCAGCTGC
TGCTGCTGTAGATAGAAATGTCTCAACGGGATGGTTGGTACTTCTGAAGT
ACATGTAGATGTGCTTGCTGGCCTTCCGTTCGAATAAAAGAGCACCAGTT
GGAAGGTTGCAAGTACTACTCCACAGAAGAATCTGCCCGCGACTTTGCCA
GTTCAACAACAAGGTTTGCGGGAGAATCCCGCGTTCAACAATATGTTTCT
GGGCCGGAGCACGGCCCAACGTCCAACTCTATTCGGACCGGTTCAATGCG
GTTCAATGCGGGCACATCAACAACATAAACTAACGACTCACGAGCGTTTA
TCCCTGGAAAACGACCGAGGTTAGACAAAGGATCTTATGGTCTGGAACAA
CAAGAGTTGGTAGGGTGTTTCGCCTTTGGCTTGCCCACAACGATGCGATA
GGCCCTTCGATGCCCTTCCTGCCCAATCCGACACACTGATTTTGATTGTT
TCCAGTTTTTTTGCCGAGCTGCTCTTGAAGTTGAAGTTGAGCCTAAAGGG
CATGTGCAAGCTGCAGCCGGCTGCTCGATGTGGAGTATGTAACCCCCCCC
CCCCCCCTTGTTCTCCACCCTATTTCCGGCACTTTCCTTAAACCAACAGG
CAACACAGGAAGACAGGCGAGTGGCACTTCGGCTACGGTGGCGGCTTTGT
CCCTCCCGTTGGGACGGTCAACCCGTCCCCCATGGGCTACCCCGGCGGCC
CGGTCTTCACGCCTTCGCCGGTGCCCGGCGGCACACTCTTCCCTGTCGCT
GTCGCTGGCCCCCCCGGAAAGAAGGAGGAGAAGAAGGAGAAGGGCAAGGG
GTGGTGGGAGACGATGTACGACGAGGACGGGGACAAGTACTGGGAGCACA
CGGTGACCAAGAAGACCACCTACAAGGACCCCTACTACTGAACACGAAGA
GAGCACGAGTAGAAAGAGAACGAACAAACCCAAGAGGTTTGCTTGTATAT
AAGCGTGCAGGCTGTGCATGATGGAGTGGAATGGGGGTCGTGTTCGGATA
ATAAGTAAGTGTAGAGTTGTCTTCCCGAGGATGTCCTCGATAAAACACGA
AAGAAAGTTCTATGGCAGGATGTTTCGGGATAATAACTAAAAAGAAGGCG
TCTTGGGTAAAATATGGTAGCAAAGGCAGAGCTAATACTTGTAGCTCCTT
GAATCTACGCCCCTTTGCGACCGCTCAGCGCCATTCTTTCACACAAGTCC
CCTTGTGTGTGGCATATGTATGTATATGTTGCGTGTCTTGTTTTGTTTGT
GTAGTGTGACGAAAACATGGGGAATGAGCTATACGATAGGTTGCGACGAC
AGCAGCAGTGCATTTTCACGCGGGGGGTAACGAGTGGGGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1268:17766..19806+

>mRNA_E-siliculosus-1a_F_contig1268.1645.1 ID=mRNA_E-siliculosus-1a_F_contig1268.1645.1|Name=mRNA_E-siliculosus-1a_F_contig1268.1645.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1122bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1268:17766..19806+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACAACTCACATCGGCAAGACGCAACGCACCCAACCGCAACAGAGCAAAGC
CTCGCGAAACTCCGCAAGCAGTGTACGACGCACGTGCTCAGTACACTTCA
CCACCCTAGCCGTCGCAGCGCATCAGCAGCAGCACTCAGTAACGGGTGAC
AGAGCATGTCGTTCTTCACGAAAGGACTCGCGGGCATCTTCAACAACGGC
AAGGCTCGCAAGAAAGACAACTCACATCGGCAAGACGCAACGCACCCAAC
CGCAACAGAGCAAAGCCTCGCGAAACTCCGCAAGCAGTGTACGACGCACG
TGCTCAGTACACTTCACCACCCTAGCCGTCGCAGCGCATCAGCAGCAGCA
CTCAGTAACGGGTGACAGAGCATGTCGTTCTTCACGAAAGGACTCGCGGG
CATCTTCAACAACGGCAAGGCTCGCAAGAAAGACGAAGGGAAGGGCTCTG
ACAAGAAGAAGGACAAGAAGGACGAAGGGAGCTGGGAGAAGCTCACGGAC
GTCTACGGCCGCACGTACTGACGAAGGGAAGGGCTCTGACAAGAAGAAGG
ACAAGAAGGACGAAGGGAGCTGGGAGAAGCTCACGGACGTCTACGGCCGC
ACGTACTGGCAACACAGGAAGACAGGCGAGTGGCACTTCGGCTACGGTGG
CGGCTTTGTCCCTCCCGTTGGGACGGTCAACCCGTCCCCCATGGGCTACC
CCGGCGGCCCGGTCTTCACGCCTTCGCCGGTGCCCGGCGGCACACTCTTC
CCTGTCGCTGTCGCTGGCCCCCCCGGAAAGAAGGAGGAGAAGAAGGAGAA
GGGCAAGGGGTGGTGGGAGACGATGTACGACGAGGACGGGGACAAGTACT
GGGAGCACACGGTGAGCAACACAGGAAGACAGGCGAGTGGCACTTCGGCT
ACGGTGGCGGCTTTGTCCCTCCCGTTGGGACGGTCAACCCGTCCCCCATG
GGCTACCCCGGCGGCCCGGTCTTCACGCCTTCGCCGGTGCCCGGCGGCAC
ACTCTTCCCTGTCGCTGTCGCTGGCCCCCCCGGAAAGAAGGAGGAGAAGA
AGGAGAAGGGCAAGGGGTGGTGGGAGACGATGTACGACGAGGACGGGGAC
AAGTACTGGGAGCACACGGTGA
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