mRNA_E-siliculosus-1a_F_contig1265.1632.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1265.1632.1
Unique NamemRNA_E-siliculosus-1a_F_contig1265.1632.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Match: A0A6H5L0J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J1_9PHAE)

HSP 1 Score: 377 bits (967), Expect = 5.230e-127
Identity = 215/316 (68.04%), Postives = 224/316 (70.89%), Query Frame = 1
Query:   34 AENGSGT--ATIFAPPWALKIRYAHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQNQMELAARMSRPVSVHCVKAHGKLVDCLRG--------------------------------------------------------------RGEGGDGLMERKTGRPPSGGQKEGYNGLGGERKRWRLPPRIALHSFTGSVEIAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLVDVLRVVPDSRILIETDRRAPAREAAEELLRVCGAIAEAKGVSIEEAAALANGNAARFLAKP 789
            AE G  T  ++ F     L   YAHARS+EWLRDLTALLEQHPHALVG   LDKVARTPDTRRVEWDD       QMELAARMSRPVSVHCVKAHGKLVDCLRG                                                              RG GGDGL+ERKTG PP+GGQKEG+NGLGGERKRWRLPPRIALHSFTGSVE+AKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLVDVL+VVPDSRILIETDRRAPAREA EELLRVC AIAEAKGVS EEAAALA+GNAARFLA P
Sbjct:   47 AEKGESTTDSSFFKFGLGLHPWYAHARSKEWLRDLTALLEQHPHALVG---LDKVARTPDTRRVEWDD-------QMELAARMSRPVSVHCVKAHGKLVDCLRGSGLDGPATHNSXXXXXXXXXXXXXXXXXXXXXADKGRAQSGVEGXXXXXSVLAEGGIGGDFCRGGGGDGLIERKTGCPPAGGQKEGHNGLGGERKRWRLPPRIALHSFTGSVEVAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLVDVLKVVPDSRILIETDRRAPAREAVEELLRVCDAIAEAKGVSAEEAAALASGNAARFLAMP 352          
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Match: D8LRA6_ECTSI (Cut9 interacting protein Scn1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA6_ECTSI)

HSP 1 Score: 340 bits (873), Expect = 4.620e-115
Identity = 176/202 (87.13%), Postives = 180/202 (89.11%), Query Frame = 1
Query:    1 MSSLNERRRDHAENGSGTATIFAPPWALKIRYAHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQNQMELAARMSRPVSVHCVKAHGKLVDCLRGRGEGGDGLMERKTGRPPSGGQKEGYNGLGGERKRWRLPPRIALHSFTGSVEIAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLV 606
            MSSLNERRRDHAEN SGTATI        +RYAHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQ QMELAARMSRPVSVHCVKAHGKLVD LRG       LMERKTGR P+GGQKE YNG+GGE KRWRLPPRIALHSFTGSVE+AKDITRLGARR YGSEVFFGFSAAVNMRGDRETKRLV
Sbjct:    1 MSSLNERRRDHAENVSGTATIC-------MRYAHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQAQMELAARMSRPVSVHCVKAHGKLVDYLRG-------LMERKTGRSPAGGQKEEYNGMGGEGKRWRLPPRIALHSFTGSVEVAKDITRLGARRDYGSEVFFGFSAAVNMRGDRETKRLV 188          
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Match: L8HCX4_ACACA (Cut9 interacting protein Scn1, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HCX4_ACACA)

HSP 1 Score: 151 bits (382), Expect = 2.370e-39
Identity = 90/254 (35.43%), Postives = 138/254 (54.33%), Query Frame = 1
Query:   31 HAENGSGTATIFAP-PWALKIRYAHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQNQMELAARMSRPVSVHCVKAHGKLVDCLRGRGEGGDGLMERKTGRPPSGGQKEGYNGLGGERKRWRLPPRIALHSFTGSVEIAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLVDVLRVVPDSRILIETDRRAPAREAAEELLRVCGAIAEAKGVSIEEAAALANGNAARFLAKP 789
            H+  G      FA  PW     YAH R  +WL +L ALL ++P A+VGEIGLD+ A TPDT R E   QLEVF+ Q  LA R+ RPVS+HCV+A G+  + ++         + ++ G                   +  LPP I +HS+ G+  +   +T +  ++G GS  +F FS  +NMR    + + V+V++ +P  R+LIETD+  P     ++++ +C  +A+A+G S+E+AA +   NA R    P
Sbjct:   65 HSRYGDKVRAAFAVHPW-----YAHRRGSDWLEELEALLRRNPAAIVGEIGLDRAATTPDTGRCEHQHQLEVFEKQFRLAGRLQRPVSIHCVRAFGQFFEAVQ--------QILKEDG-------------------KMALPPSIIMHSYGGTAGMMDSLTTM--KQGIGSRFYFSFSPVINMR----SPKTVEVIKHIPQDRLLIETDQNTPT-SIEDDIMEMCEIVAKARGWSVEQAARITLENAQRVFDFP 279          
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Match: A0A7S1XY07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XY07_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.880e-35
Identity = 93/241 (38.59%), Postives = 128/241 (53.11%), Query Frame = 1
Query:   61 IFAPPWALKIRYAHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQNQMELAARMSRPVSVHCVKAHGKLVDCLRGRGEGGDGLMERKTGRPPSGGQKEGYNGLGGERKRWRLPPRIALHSFTGSVEIAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLVDVLRVVPDSRILIETDRRAPAREAAEELLRVCGAIAEAKGVSIEEAAALANGNAARFLA 783
            +  P + +   +AH     W+  L   L  HP AL+GEIGLDK ARTP+TRR E++ Q EVF  Q+ LAA + RPVSVHCV++ GKL            G+ME   G   +G                 LPP IALHS+  S +       L       +E++ GFS A+N R + + ++L++ + VVPD R+L+E+D   P  +  E L  +C   AEAKG S+EE A     NA RF+A
Sbjct:   38 VAVPAFGVHPWFAHRAENGWIERLRLRLASHPAALLGEIGLDKAARTPETRRCEYEAQQEVFAAQLALAAELRRPVSVHCVRSVGKLF-----------GMME--AGAAAAG-----------------LPPAIALHSYGSSPDWIPRYLALP------TELYVGFSYAINGR-ENQREKLLENIAVVPDDRLLLESDLECPL-DIEEHLRAMCAIFAEAKGWSLEETAERTWANAERFVA 240          
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Match: A0A835WLZ6_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WLZ6_9CHLO)

HSP 1 Score: 136 bits (343), Expect = 1.530e-33
Identity = 87/218 (39.91%), Postives = 126/218 (57.80%), Query Frame = 1
Query:   97 AHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTR-RVEWDDQLEVFQNQMELAARMSRPVSVHCVKAHGKLVDCLRGRGEGGDGLMERKTGRPPSGGQKEGYNGLGGERKRWRLPPRIALHSFTGSVEIAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLVDVLRVVPDSRILIETDRRAPAREAAEELLRVCGAIAEAKGVSIEEAA 747
            A A  EEWL  L  LL +HPHALVGE GLD+ A  P TR +  W+ QL + +  + LAA + RPVS+HCV+ +G L     GR  G D  M R+ G  P+G                  PP+I LHS+ GSV++ K  T++    G G  ++F FS  +N R   + ++L++ L  VP  R+L+E+D+ +PA   +  L+ + GA+AEA+GVS++ AA
Sbjct:  123 AVAAPEEWLPRLRELLARHPHALVGEFGLDRAAVVPGTRLQPGWEHQLALTEAHLRLAAELGRPVSMHCVQGYGHLQVGAGGRAGGWD--MLRRLG--PAG-----------------CPPKIMLHSYGGSVDLIKGFTKMPG--GLGERIYFSFSDVINGRKPGQREKLLERLAAVPAGRLLLESDQNSPAGIDSG-LVDILGAVAEARGVSVDAAA 316          
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Match: L8GPB7_ACACA (TatDrelated DNase, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPB7_ACACA)

HSP 1 Score: 130 bits (326), Expect = 3.070e-32
Identity = 81/209 (38.76%), Postives = 115/209 (55.02%), Query Frame = 1
Query:   94 YAHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQNQMELAARMSRPVSVHCVKAHGKLVDCLRGRGEGGDGLMERKTGRPPSGGQKEGYNGLGGERKRWRLPPRIALHSFTGSVEIAKDITRLGARRGYGSE-VFFGFSAAVNMRGDRETKRLVDVLRVVPDSRILIETDRRAPAREAAEELLRVCGAIAE 717
            +AH  +E WL +L   L  +P A+VGEIGLDK A TPDT R E+D Q   F  Q +LA  + RP+S HCV+A G ++   R      D LM          G+++        + R  LPP I +HSF G+V   + +     R+G   E ++F FS  VNMR  +     +DV++ VP+ R+LIE+D+ +PA    E+L RVC  +AE
Sbjct:   42 FAHRLAEGWLEELREKLVANPRAIVGEIGLDKAAITPDTARNEYDAQTTAFTAQFDLAVELQRPISFHCVRAFGHVMTLFRQHALRYDQLMRS--------GEED--------KARGTLPPAIIMHSFAGTVGGMESLLSNKGRKGNIQERLYFSFSKIVNMRAPKT----IDVIKAVPEDRLLIESDQHSPAH-GEEDLSRVCEIVAE 229          
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Match: A0A835T7X1_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T7X1_CHLIN)

HSP 1 Score: 130 bits (326), Expect = 8.300e-31
Identity = 86/242 (35.54%), Postives = 122/242 (50.41%), Query Frame = 1
Query:   25 RDHAENGSGTATIFAPPWALKIRYAHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTR-RVEWDDQLEVFQNQMELAARMSRPVSVHCVKAHGKLVDCLRGRGEGGDGLMERKTGRPPSGGQKEGYNGLGGERKRWRLPPRIALHSFTGSVEIAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLVDVLRVVPDSRILIETDRRAPAREAAEELLRVCGAIAEAKGVSIEEAA 747
            RD AE   G      P   + +    A  EEW+  L  LL +HPHALVGE GLD+ A  P TR +  W  QL + +  + LA  + RPVS+HCV+ +G L D LR  G  G                                PP+I LHS+ GSVE+ K   ++    G G  ++F FS  +N R   +  +L++ L  VP  R+L+E+D+ +PA   +  L+ +  A+AEA+GVS+E AA
Sbjct:  103 RDSAEAHPGLLAALGPGGDMAV----AAPEEWVPRLRELLLRHPHALVGEFGLDRAAVVPGTRLQPGWAHQLALTEAHLRLAVELGRPVSMHCVQGYGHLQDMLRRLGPEG-------------------------------CPPKIMLHSYGGSVELVKGFIKMPG--GLGERIYFSFSDVINGRKPGQRAKLLERLAAVPAERLLLESDQNSPAGIDSG-LVDILDAVAEARGVSVEAAA 306          
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Match: A0A8J4ARR6_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4ARR6_9CHLO)

HSP 1 Score: 129 bits (324), Expect = 1.140e-30
Identity = 83/233 (35.62%), Postives = 121/233 (51.93%), Query Frame = 1
Query:   82 LKIRYAHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTR-RVEWDDQLEVFQNQMELAARMSRPVSVHCVKAHGKLVDCLRGRGEGGDGLMERKTGRPPSGGQKEGYNGLGGERKRWRLPPRIALHSFTGSVEIAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLVDVLRVVPDSRILIETDRRAPAREAAEELLRVCGAIAEAKGVSIEEAAALANGNAARF 777
            L  R A    E W+  L +LL  HPHA+VGE GLD+ A  P TR +  W  QL + +  + LA+ + RP S+HCV+ +G L D LR  G  G                                PPRI LHS+ GSV++ K  T+L   +G G+ ++F FS+ +N    R   +L++ LR VP  R+L+E+D+ +P+      L  +  A+AEA+G++IE+AAA    N   F
Sbjct:  162 LLARMAPIPPERWMPRLRSLLTDHPHAVVGEFGLDRAAVVPGTRLQPAWSHQLALTEMHLRLASELGRPASLHCVQGYGALQDMLRTLGPEG-------------------------------CPPRIMLHSYGGSVDLIKGFTKLP--KGVGNRIYFSFSSVIN---GRARDKLLERLRAVPLERLLVESDQNSPSG-VDPGLRAILEAVAEARGITIEDAAAATTNNFLEF 357          
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Match: A0A2K3CQ28_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3CQ28_CHLRE)

HSP 1 Score: 128 bits (322), Expect = 2.190e-30
Identity = 83/218 (38.07%), Postives = 116/218 (53.21%), Query Frame = 1
Query:   97 AHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTR-RVEWDDQLEVFQNQMELAARMSRPVSVHCVKAHGKLVDCLRGRGEGGDGLMERKTGRPPSGGQKEGYNGLGGERKRWRLPPRIALHSFTGSVEIAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLVDVLRVVPDSRILIETDRRAPAREAAEELLRVCGAIAEAKGVSIEEAA 747
            A A  E+W   L  LL +HPHALVGE GLD+ A  P +R +  WD QL + +  + LAA + RPVS+HCV+ +G L D LR  G  G                                PP+I LHS+ GSV++ K  TRL    G G  ++F FS  +N R   +  +L+  L  VP  R+L+E+D+ +PA   +  L+ +  A+AEA+GVS+E AA
Sbjct:  123 AVAAPEQWRPRLRELLLRHPHALVGEFGLDRAAVVPGSRLQPGWDHQLALTEAHLALAAELRRPVSMHCVQGYGHLQDMLRRLGPEG-------------------------------CPPKIMLHSYGGSVDLVKGFTRLPG--GLGERIYFSFSDVINGRKPGQRAKLLQRLAAVPAERLLLESDQNSPAGIDSG-LVYILEAVAEARGVSVETAA 306          
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Match: A0A8J4G6C9_9CHLO (Uncharacterized protein n=3 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4G6C9_9CHLO)

HSP 1 Score: 125 bits (315), Expect = 2.400e-29
Identity = 81/233 (34.76%), Postives = 119/233 (51.07%), Query Frame = 1
Query:   82 LKIRYAHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTR-RVEWDDQLEVFQNQMELAARMSRPVSVHCVKAHGKLVDCLRGRGEGGDGLMERKTGRPPSGGQKEGYNGLGGERKRWRLPPRIALHSFTGSVEIAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLVDVLRVVPDSRILIETDRRAPAREAAEELLRVCGAIAEAKGVSIEEAAALANGNAARF 777
            L  R A    E W+  L +LL  HPHA+VGE GLD+ A  P TR +  W  QL + +  + LA+ + RP S+HCV+ +G L D LR  G  G                                PP+I LHS+ GSV++ +  T+L   +G G  ++F FS+ +N    R   +L++ LR VP  R+L+E+D+ +PA      L  +  A+AEA+G+++EEAA     N   F
Sbjct:  160 LLARLAPIPPERWMPRLQSLLTAHPHAVVGEFGLDRAAVVPGTRLQPAWAHQLALTEMHLRLASELGRPASLHCVQGYGALQDMLRTLGPEG-------------------------------CPPKIMLHSYGGSVDLIRGFTKLP--KGVGDRIYFSFSSVIN---GRARDKLLERLRAVPLERLLVESDQNSPAG-VDPGLRAILEAVAEARGITVEEAAVATTNNFREF 355          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1265.1632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0J1_9PHAE5.230e-12768.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRA6_ECTSI4.620e-11587.13Cut9 interacting protein Scn1 n=1 Tax=Ectocarpus s... [more]
L8HCX4_ACACA2.370e-3935.43Cut9 interacting protein Scn1, putative n=1 Tax=Ac... [more]
A0A7S1XY07_9STRA1.880e-3538.59Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A835WLZ6_9CHLO1.530e-3339.91Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
L8GPB7_ACACA3.070e-3238.76TatDrelated DNase, putative n=1 Tax=Acanthamoeba c... [more]
A0A835T7X1_CHLIN8.300e-3135.54Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A8J4ARR6_9CHLO1.140e-3035.62Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A2K3CQ28_CHLRE2.190e-3038.07Uncharacterized protein n=2 Tax=Chlamydomonas rein... [more]
A0A8J4G6C9_9CHLO2.400e-2934.76Uncharacterized protein n=3 Tax=Volvox reticulifer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1265contigE-siliculosus-1a_F_contig1265:20172..24213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size792
Model size1041
Exons8
Ec32 orthologEc-06_003240.1
Ec32 ortholog descriptionTatD family
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.L
EggNOG OGsCOG0084@1,KOG3020@2759
EggNOG free text desc.hydrolase activity, acting on ester bonds
KEGG koko:K03424
Seed eggNOG ortholog2880.D8LRA6
Seed ortholog evalue3.1e-91
Seed ortholog score341.7
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927786.6001098-CDS-E-siliculosus-1a_F_contig1265:20171..202351622927786.6001098-CDS-E-siliculosus-1a_F_contig1265:20171..20235Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1265 20172..20235 +
1696318679.7518914-CDS-E-siliculosus-1a_F_contig1265:20171..202351696318679.7518914-CDS-E-siliculosus-1a_F_contig1265:20171..20235Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1265 20172..20235 +
1622927786.6162045-CDS-E-siliculosus-1a_F_contig1265:20608..207221622927786.6162045-CDS-E-siliculosus-1a_F_contig1265:20608..20722Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1265 20609..20722 +
1696318679.7642248-CDS-E-siliculosus-1a_F_contig1265:20608..207221696318679.7642248-CDS-E-siliculosus-1a_F_contig1265:20608..20722Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1265 20609..20722 +
1622927786.6277115-CDS-E-siliculosus-1a_F_contig1265:21159..212151622927786.6277115-CDS-E-siliculosus-1a_F_contig1265:21159..21215Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1265 21160..21215 +
1696318679.773538-CDS-E-siliculosus-1a_F_contig1265:21159..212151696318679.773538-CDS-E-siliculosus-1a_F_contig1265:21159..21215Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1265 21160..21215 +
1622927786.64124-CDS-E-siliculosus-1a_F_contig1265:21640..217441622927786.64124-CDS-E-siliculosus-1a_F_contig1265:21640..21744Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1265 21641..21744 +
1696318679.7824829-CDS-E-siliculosus-1a_F_contig1265:21640..217441696318679.7824829-CDS-E-siliculosus-1a_F_contig1265:21640..21744Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1265 21641..21744 +
1622927786.6511319-CDS-E-siliculosus-1a_F_contig1265:21957..220891622927786.6511319-CDS-E-siliculosus-1a_F_contig1265:21957..22089Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1265 21958..22089 +
1696318679.7950242-CDS-E-siliculosus-1a_F_contig1265:21957..220891696318679.7950242-CDS-E-siliculosus-1a_F_contig1265:21957..22089Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1265 21958..22089 +
1622927786.665196-CDS-E-siliculosus-1a_F_contig1265:22491..225331622927786.665196-CDS-E-siliculosus-1a_F_contig1265:22491..22533Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1265 22492..22533 +
1696318679.8091354-CDS-E-siliculosus-1a_F_contig1265:22491..225331696318679.8091354-CDS-E-siliculosus-1a_F_contig1265:22491..22533Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1265 22492..22533 +
1622927786.6782236-CDS-E-siliculosus-1a_F_contig1265:23320..234151622927786.6782236-CDS-E-siliculosus-1a_F_contig1265:23320..23415Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1265 23321..23415 +
1696318679.8179798-CDS-E-siliculosus-1a_F_contig1265:23320..234151696318679.8179798-CDS-E-siliculosus-1a_F_contig1265:23320..23415Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1265 23321..23415 +
1622927786.6932187-CDS-E-siliculosus-1a_F_contig1265:23779..239641622927786.6932187-CDS-E-siliculosus-1a_F_contig1265:23779..23964Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1265 23780..23964 +
1696318679.826839-CDS-E-siliculosus-1a_F_contig1265:23779..239641696318679.826839-CDS-E-siliculosus-1a_F_contig1265:23779..23964Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1265 23780..23964 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927786.7086086-UTR-E-siliculosus-1a_F_contig1265:23964..242131622927786.7086086-UTR-E-siliculosus-1a_F_contig1265:23964..24213Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1265 23965..24213 +
1696318679.8360684-UTR-E-siliculosus-1a_F_contig1265:23964..242131696318679.8360684-UTR-E-siliculosus-1a_F_contig1265:23964..24213Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1265 23965..24213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1265.1632.1prot_E-siliculosus-1a_F_contig1265.1632.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1265 20172..23964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1265.1632.1

>prot_E-siliculosus-1a_F_contig1265.1632.1 ID=prot_E-siliculosus-1a_F_contig1265.1632.1|Name=mRNA_E-siliculosus-1a_F_contig1265.1632.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=264bp
MSSLNERRRDHAENGSGTATIFAPPWALKIRYAHARSEEWLRDLTALLEQ
HPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQNQMELAARMSRPVSVHC
VKAHGKLVDCLRGRGEGGDGLMERKTGRPPSGGQKEGYNGLGGERKRWRL
PPRIALHSFTGSVEIAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKR
LVDVLRVVPDSRILIETDRRAPAREAAEELLRVCGAIAEAKGVSIEEAAA
LANGNAARFLAKP*
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mRNA from alignment at E-siliculosus-1a_F_contig1265:20172..24213+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1265.1632.1 ID=mRNA_E-siliculosus-1a_F_contig1265.1632.1|Name=mRNA_E-siliculosus-1a_F_contig1265.1632.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4042bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1265:20172..24213+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCGTCGCTCAATGAGCGTCGGCGAGACCATGCCGAGAACGGAAGTGG CACAGCAACGATATGTATGAGAAAATTAAAGCGTAAGCCAGCCGTTTGTT TATGATGAGCATTTGATAACTCTGTTCGAACAGCAGTAGCACATCTAAAC GGAGAGATCCACGATCCTCCTAACGATGCTCCTAACGAGTATCCTTGCCT GTACTCCAGGTCTACGAGAACACGAAAATACACGCATGCACGCCGCAGCA TGTAACGTATCGTGGAACGGGGTAGCATCACATCTCTTTCCCGGGGTAGC ACTCTAGTTGCCCGCCTTCCCCCGAGAAATCGACGTGGCTCTCGTGAAGC ACTTGAACCAGATGTATACCGTATCAGCAGTGGTGTTGACTGCGGTCCTC GGACCCATGCATTGCCTGCAATAGACTAGTTATCCAGTCGCTCCGCCGTG GGCTTTGAAAATCAGGTACGCCCACGCGAGGTCCGAGGAGTGGCTGCGCG ATCTCACGGCGTTACTCGAGCAGCATCCGCACGCCCTCGTGGGTGAAATT GGTGAGCAGGAGAGACAGGAGAAAAGTGCCGCCAGCGGGAGATACCCCCG CCCCTCGCCCCACATTGAGTTCATTTGCCCAAGCCAACAACTACGCACAC GCATTGAGAATTCGTTGAGGTACAGTACACGCAATTATAAAGTGCAGTCG AACTTTTAACAGAGGACACCCCTTGAGCCTATTCTATGTATTAGGGTGAC TTCAAAATCACCCGTTGTAGAATATTCTCCCGCGAGATACCTCTTGTACG AGGCACCGCTTACCCTCGAATACCTGCATTGAGTTGCGGTTTCGACGAAC GAAGGCAGTCAACCTGTGATGTTTCGTGACTGGCACACTTGCCCACCACC ATAATGCAGACCCAAAGGTGTGTGCCGTTACAGGAGGTGCGAGATACAAT CGATCGATTTTTCTCTTTTGCTCGCCCGTTGGCGGCAGGGCTCGACAAGG TGGCCCGCACTCCCGACACCAGAAGGGTGGAGTGGGACGATCAGGTAAGA GGTGCGGGAGAAAATAGGGAGTGGTTCTTTCCGCTTCGGTCATAAGCTCT TTGCCCCCCCATGCCTGCGTGCGTACCTCCCCAGTATTGCTCTGGTTGGG AGTCCGGAAAAATGGCGTTGCGCCCGGCACCGTCGTCTCGTGTGGCTTGA TGACTTCGTTCTCGAGCTATGGTAGAAGAGGGGTGGGATCGTAGACGTAC TACTGTTTGTTTCGAACCAGGGGAAGCTATTGTTTCCGATTTCACGATTG TTCCGGGTGTGCGGTGCACACCTGGCGCCGTTGCATGCCTGGATTTCGGG GGGCACGCCCGAACATGGACTCGTTGCCCAACTCTGGCCATCGATCGATC GATGTGTATGCGCACTCACTCGTTGGTACTCAACTCTCTTGCCGTATTAT TATTTTCCCTTGATTCAAGCTGGAGGTCTTCCAGAATCAGATGGAGCTGG CCGCGAGGATGTCTCGGCCGGTCTCGGTGCACTGCGTCAAGGCCCACGGG AAGCTAGTGGACTGCCTTCGGGGGTCAGGGCGGGACGGTCCTACGACACA CAACAGCAGCAGCAGCAGCAGAAGCGGCAGCAGAAGCGGCAGCGGCGGCA GCAGCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGTGCC GACGAAGGGCGGACGCAGGACGGAGTTGAAGTCAGCGGTGGCGACGGCAG CGTTCTCGTGGAGGGAGGCAACGGCGGCGACTTTAGTCGTGGTGAGGGCG GTGATGGGTTGATGGAACGCAAGACCGGGCGTCCGCCAAGTGGGGGGCAG AAAGAGGGGTACAATGGCCTGGGAGGGGAGAGAAAGCGGTGGCGACTTCC GCCGCGAATCGCACTGCAGTGAGTGTGAAAAAACACCGGTGAATTCATTC GAACCAGAGGGTTTTGCAGCTGGTTGCGTAAGTTGTCGCGAATGAGTTGC TATCTACTATACGAGTTGCTATCTACTATACGTTGTTCTTTCAAGGAAAT GGTGAGGTGGTCCCACGTGAAGCAGCACACACACACGCACACACCCCGCT TTTCGCGCCTGTTCCGTTCGTTGTCCCGTCTCTCCCACAATGTGTTTGAG TCCGCGCCACATTCTTCCCTTTTGCCTCATGTTCTGATGCTGCTGATGCT GCTGCTGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCTGCTGTGCT ACTGCTGCGGCTGCGGCTGCTGCTACGGCTACGTATTGGGCTACTGATTC TCGTTTTTCGGGACATGAAGCTCCTTCACGGGATCAGTGGAGATCGCCAA GGACATTACAAGGTGAACCCCCCTTCCTGGACAGGTGCCCTAGACAACAT CATATTGCTAGGCCTCTAGCGCAATGTAGGATGCTGGACGACTCCTTAGC AGCCAGAATGGTCTCAACGGAAACAATTGGTCGATAGTCCATTTGGGACT GGGCTATCATAAGGTAGGCTCAGCTCGTCAACAGAAGAAGGCGGGTAATC AAGACGGAACCAGATGGGTCAGGTCGGGCTTGAGGGCTCGATCGCCTCTT ACTTTTTTACGGCCGAGTCAAGTCTCCACATTGACCAACCTACCCATCGA ACCCTCCAGAGGGTTACCATGACAGCCAGGTCCAATTTTCACACACACAC TTTTTTTCTGTTATTGCTACGGTATCTGTATTTAATGCGGAGAGTAGCAT AGACTCCCCAACGACGTTCCTTCACGGGGGCCCAGATCGTTTACTTCCGT AGCATTATTTTGCTTTCAACCGCACTGAGACTGATGCCTTTTCATTGATC AACCGGTTACCACAGTCGATGCTAGTGAGAACCACACCCACACATACGCG CATGGTCAGCCGGTTAGCGCGGTCGATGTCAATTCAAGAAACGCACACGC AGCCTCCAGCTGCGCGTTTGGTGTAGGCCCAAAAGCCTTAGGGACACGAA ACAGTTTGCAGAGCGCCGACCAACGTGTTCTTAGACTTGTGTGCCGCCAA TGATTTTGTGCCGTCAATGACACGGCAACAACAACGCAATGATATAGTAA CGAGTACTTCCGGCTGTTTTTTCTCGCTGTTGGGGTGCGGTTGCGTCAGG CTCGGCGCGCGGAGGGGCTACGGTAGCGAGGTTTTCTTTGGGTTTTCGGC GGCAGTAAACATGCGGGGCGACCGTGAGACGAAACGCTTGGTCGGTGAGT GTGAGCATCGGCAAGCGTGTTGGTGAGCCGCAGGGACCCTCTGCCCAACC AGAAAGTTGTTGTTGAAGAAAGGACGCGCGCACTCGAGACATCGAACTCT GGAAGGGTTTTACTCGTGCGTGCCCCTCCTCTCCACACGCGACGCGCTTT GCCCCTCCTTCTCTCCACCCTGTGTCACTTTTCGTGTGATCGCGCGCGCG TGCGTCGAGTTGCCTAATGTTTTTTTGCCATGTTCCAGAAGCCGACAAAC CCTCGTGCTCTTTGCCTCCACGCCACACCGCTCGTTGTTGTTGCCCCCTC GGGCGAACGCCGTTGCCGCTTCCGCTTGACGTTTGTTCGTTCGCGAAAAT AATGACAGATGTGCTGAGAGTCGTCCCCGACTCTCGTATTTTGATAGAGA CCGACAGGCGTGCTCCGGCGAGGGAAGCGGCGGAGGAACTCCTGCGGGTG TGCGGCGCAATTGCGGAAGCCAAGGGGGTTTCGATCGAGGAGGCCGCGGC GCTCGCAAACGGAAACGCCGCCCGATTTCTGGCAAAGCCGTGATGTTCGA AAGGGGGGGGCTTCCCCACCACCAAGAGAGAAAGAAGATCCCAATCTACG TGCGGTGCGGTTGGCGAGTTGTTCCTTTCGCAGGAAGGAGTCCGCCCCCT TTTGTCGGAGGGAACCTGGAGTACGTTGCCCTTGATTTTTGGACACAGGG GCACAGAAGTCCCGTGTAGATCACGTGCGTAGGCATGTTGTTTGTGAGGG AAACTCATACAGAAAGTAATAGACAATGCGTGCATGCGGTGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1265:20172..24213+

>mRNA_E-siliculosus-1a_F_contig1265.1632.1 ID=mRNA_E-siliculosus-1a_F_contig1265.1632.1|Name=mRNA_E-siliculosus-1a_F_contig1265.1632.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1584bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1265:20172..24213+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCGTCGCTCAATGAGCGTCGGCGAGACCATGCCGAGAACGGAAGTGG
CACAGCAACGATATATGTCGTCGCTCAATGAGCGTCGGCGAGACCATGCC
GAGAACGGAAGTGGCACAGCAACGATATTCGCTCCGCCGTGGGCTTTGAA
AATCAGGTACGCCCACGCGAGGTCCGAGGAGTGGCTGCGCGATCTCACGG
CGTTACTCGAGCAGCATCCGCACGCCCTCGTGGGTGAAATTGTCGCTCCG
CCGTGGGCTTTGAAAATCAGGTACGCCCACGCGAGGTCCGAGGAGTGGCT
GCGCGATCTCACGGCGTTACTCGAGCAGCATCCGCACGCCCTCGTGGGTG
AAATTGGGCTCGACAAGGTGGCCCGCACTCCCGACACCAGAAGGGTGGAG
TGGGACGATCAGGGCTCGACAAGGTGGCCCGCACTCCCGACACCAGAAGG
GTGGAGTGGGACGATCAGCTGGAGGTCTTCCAGAATCAGATGGAGCTGGC
CGCGAGGATGTCTCGGCCGGTCTCGGTGCACTGCGTCAAGGCCCACGGGA
AGCTAGTGGACTGCCTTCGGGGCTGGAGGTCTTCCAGAATCAGATGGAGC
TGGCCGCGAGGATGTCTCGGCCGGTCTCGGTGCACTGCGTCAAGGCCCAC
GGGAAGCTAGTGGACTGCCTTCGGGGTCGTGGTGAGGGCGGTGATGGGTT
GATGGAACGCAAGACCGGGCGTCCGCCAAGTGGGGGGCAGAAAGAGGGGT
ACAATGGCCTGGGAGGGGAGAGAAAGCGGTGGCGACTTCCGCCGCGAATC
GCACTGCATCGTGGTGAGGGCGGTGATGGGTTGATGGAACGCAAGACCGG
GCGTCCGCCAAGTGGGGGGCAGAAAGAGGGGTACAATGGCCTGGGAGGGG
AGAGAAAGCGGTGGCGACTTCCGCCGCGAATCGCACTGCACTCCTTCACG
GGATCAGTGGAGATCGCCAAGGACATTACAAGCTCCTTCACGGGATCAGT
GGAGATCGCCAAGGACATTACAAGGCTCGGCGCGCGGAGGGGCTACGGTA
GCGAGGTTTTCTTTGGGTTTTCGGCGGCAGTAAACATGCGGGGCGACCGT
GAGACGAAACGCTTGGTCGGCTCGGCGCGCGGAGGGGCTACGGTAGCGAG
GTTTTCTTTGGGTTTTCGGCGGCAGTAAACATGCGGGGCGACCGTGAGAC
GAAACGCTTGGTCGATGTGCTGAGAGTCGTCCCCGACTCTCGTATTTTGA
TAGAGACCGACAGGCGTGCTCCGGCGAGGGAAGCGGCGGAGGAACTCCTG
CGGGTGTGCGGCGCAATTGCGGAAGCCAAGGGGGTTTCGATCGAGGAGGC
CGCGGCGCTCGCAAACGGAAACGCCGCCCGATTTCTGGCAAAGCCGTGAA
TGTGCTGAGAGTCGTCCCCGACTCTCGTATTTTGATAGAGACCGACAGGC
GTGCTCCGGCGAGGGAAGCGGCGGAGGAACTCCTGCGGGTGTGCGGCGCA
ATTGCGGAAGCCAAGGGGGTTTCGATCGAGGAGGCCGCGGCGCTCGCAAA
CGGAAACGCCGCCCGATTTCTGGCAAAGCCGTGA
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