mRNA_E-siliculosus-1a_F_contig12632.1628.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12632.1628.1
Unique NamemRNA_E-siliculosus-1a_F_contig12632.1628.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12632.1628.1 vs. uniprot
Match: D8LEI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI7_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 3.070e-22
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 1
Query:    1 APQEFQRVLTDFQGCEEQLVSEAQDGMRKHVVFESSSLANQQYDLQMLFKV 153
            A QEFQRVLTDFQGCEEQLVSEAQDGMRKHVVFESSSLANQQYDLQMLFK+
Sbjct:  251 AVQEFQRVLTDFQGCEEQLVSEAQDGMRKHVVFESSSLANQQYDLQMLFKL 301          
BLAST of mRNA_E-siliculosus-1a_F_contig12632.1628.1 vs. uniprot
Match: A0A6H5K102_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K102_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.070e-21
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 1
Query:    1 APQEFQRVLTDFQGCEEQLVSEAQDGMRKHVVFESSSLANQQYDLQMLFK 150
            A QEFQRVLTDFQGCEEQL+SEAQDGMRKHVVFESSSLANQQYDLQMLFK
Sbjct:  252 AVQEFQRVLTDFQGCEEQLMSEAQDGMRKHVVFESSSLANQQYDLQMLFK 301          
BLAST of mRNA_E-siliculosus-1a_F_contig12632.1628.1 vs. uniprot
Match: A0A7S3YL22_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YL22_HETAK)

HSP 1 Score: 61.2 bits (147), Expect = 1.400e-10
Identity = 29/48 (60.42%), Postives = 40/48 (83.33%), Query Frame = 1
Query:   10 EFQRVLTDFQGCEEQLVSEAQDGMRKHVVFESSSLANQQYDLQMLFKV 153
            ++Q +LT FQ  EE  ++EA+DG+RK +V E+S+LANQQYD+QMLFKV
Sbjct:   84 DYQCILTSFQKIEELYLAEARDGLRKQLVLEASALANQQYDVQMLFKV 131          
BLAST of mRNA_E-siliculosus-1a_F_contig12632.1628.1 vs. uniprot
Match: A0A835YMJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMJ7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 9.590e-8
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   10 EFQRVLTDFQGCEEQLVSEAQDGMRKHVVFESSSLANQQYDLQMLFKV 153
            E Q  L + Q  E    SE QDG+R++ VFESS+LAN+QYD+QM+FKV
Sbjct:  105 ELQASLNENQAAESTFASELQDGLRRNAVFESSTLANEQYDVQMVFKV 152          
BLAST of mRNA_E-siliculosus-1a_F_contig12632.1628.1 vs. uniprot
Match: A0A7R9YC05_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YC05_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 9.740e-8
Identity = 26/46 (56.52%), Postives = 36/46 (78.26%), Query Frame = 1
Query:   13 FQRVLTDFQGCEEQLVSEAQDGMRKHVVFESSSLANQQYDLQMLFK 150
             Q ++T+ Q  EE+++   QD +R+H VFESS+LANQQYD+QMLFK
Sbjct:  307 LQILVTEAQSLEEEVLQGLQDSLRQHAVFESSALANQQYDVQMLFK 352          
BLAST of mRNA_E-siliculosus-1a_F_contig12632.1628.1 vs. uniprot
Match: A0A812VW49_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VW49_SYMMI)

HSP 1 Score: 53.9 bits (128), Expect = 1.940e-7
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   16 QRVLTDFQGCEEQLVSEAQDGMRKHVVFESSSLANQQYDLQMLFK 150
            Q + T  QG +E  +   QD MRK +VFESSSLANQQYD+QMLFK
Sbjct:  136 QILHTKMQGMQESFILLLQDHMRKMIVFESSSLANQQYDIQMLFK 180          
BLAST of mRNA_E-siliculosus-1a_F_contig12632.1628.1 vs. uniprot
Match: A0A4D9DAU7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAU7_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.630e-6
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 APQEFQRVLTDFQGCEEQLVSEAQDGMRKHVVFESSSLANQQYDLQMLFKV 153
            A  E QRVL  +Q CEE+ +      +RK +VFESS LAN+Q++ Q++FKV
Sbjct:  171 AAHELQRVLCHYQSCEERCIERLAVVLRKQIVFESSCLANEQFEAQIIFKV 221          
BLAST of mRNA_E-siliculosus-1a_F_contig12632.1628.1 vs. uniprot
Match: W7U4J7_9STRA (FCH domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U4J7_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.630e-6
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 APQEFQRVLTDFQGCEEQLVSEAQDGMRKHVVFESSSLANQQYDLQMLFKV 153
            A  E QRVL  +Q CEE+ +      +RK +VFESS LAN+Q++ Q++FKV
Sbjct:  318 AAHELQRVLCHYQSCEERCIERLAVVLRKQIVFESSCLANEQFEAQIIFKV 368          
BLAST of mRNA_E-siliculosus-1a_F_contig12632.1628.1 vs. uniprot
Match: A0A2D4CDT3_PYTIN (FCH domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDT3_PYTIN)

HSP 1 Score: 50.8 bits (120), Expect = 5.700e-6
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1
Query:   13 FQRVLTDFQGCEEQLVSEAQDGMRKHVVFESSSLANQQYDLQML 144
             Q VLT+FQ   E  +S     +RKHVVFESS+LAN+QYD QM+
Sbjct:  247 LQSVLTEFQQIAEHRISNLATNLRKHVVFESSALANEQYDWQMI 290          
BLAST of mRNA_E-siliculosus-1a_F_contig12632.1628.1 vs. uniprot
Match: K3WMP0_GLOUD (F-BAR domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMP0_GLOUD)

HSP 1 Score: 49.7 bits (117), Expect = 1.460e-5
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 1
Query:   13 FQRVLTDFQGCEEQLVSEAQDGMRKHVVFESSSLANQQYDLQML 144
             Q VLT++Q   E  +S     +RKHVVFESS+LAN+QYD QM+
Sbjct:  280 LQSVLTEYQQIAEHRISNLATNLRKHVVFESSALANEQYDWQMI 323          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12632.1628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LEI7_ECTSI3.070e-2296.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K102_9PHAE1.070e-2196.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3YL22_HETAK1.400e-1060.42Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YMJ7_9STRA9.590e-856.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9YC05_9STRA9.740e-856.52Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A812VW49_SYMMI1.940e-762.22Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A4D9DAU7_9STRA1.630e-649.02Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7U4J7_9STRA1.630e-649.02FCH domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A2D4CDT3_PYTIN5.700e-656.82FCH domain-containing protein n=2 Tax=Pythium insi... [more]
K3WMP0_GLOUD1.460e-554.55F-BAR domain-containing protein n=1 Tax=Globispora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12632contigE-siliculosus-1a_F_contig12632:853..1005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size153
Model size153
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs28IQT@1,2QR23@2759
Seed eggNOG ortholog2880.D8LEI7
Seed ortholog evalue7.6e-18
Seed ortholog score95.5
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927785.195148-CDS-E-siliculosus-1a_F_contig12632:852..10051622927785.195148-CDS-E-siliculosus-1a_F_contig12632:852..1005Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12632 853..1005 +
1696318679.268267-CDS-E-siliculosus-1a_F_contig12632:852..10051696318679.268267-CDS-E-siliculosus-1a_F_contig12632:852..1005Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12632 853..1005 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12632.1628.1prot_E-siliculosus-1a_F_contig12632.1628.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12632 853..1005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12632.1628.1

>prot_E-siliculosus-1a_F_contig12632.1628.1 ID=prot_E-siliculosus-1a_F_contig12632.1628.1|Name=mRNA_E-siliculosus-1a_F_contig12632.1628.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=51bp
APQEFQRVLTDFQGCEEQLVSEAQDGMRKHVVFESSSLANQQYDLQMLFK
V
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mRNA from alignment at E-siliculosus-1a_F_contig12632:853..1005+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12632.1628.1 ID=mRNA_E-siliculosus-1a_F_contig12632.1628.1|Name=mRNA_E-siliculosus-1a_F_contig12632.1628.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=153bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12632:853..1005+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTCCGCAGGAGTTCCAGCGCGTGCTAACGGATTTCCAGGGCTGCGAGGA GCAGCTGGTGTCGGAGGCGCAAGACGGGATGCGCAAGCACGTGGTGTTCG AGAGCAGCTCCCTGGCCAACCAGCAGTACGACCTGCAGATGCTGTTCAAG GTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12632:853..1005+

>mRNA_E-siliculosus-1a_F_contig12632.1628.1 ID=mRNA_E-siliculosus-1a_F_contig12632.1628.1|Name=mRNA_E-siliculosus-1a_F_contig12632.1628.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=306bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12632:853..1005+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTCCGCAGGAGTTCCAGCGCGTGCTAACGGATTTCCAGGGCTGCGAGGA
GCAGCTGGTGTCGGAGGCGCAAGACGGGATGCGCAAGCACGTGGTGTTCG
AGAGCAGCTCCCTGGCCAACCAGCAGTACGACCTGCAGATGCTGTTCAAG
GTGGCTCCGCAGGAGTTCCAGCGCGTGCTAACGGATTTCCAGGGCTGCGA
GGAGCAGCTGGTGTCGGAGGCGCAAGACGGGATGCGCAAGCACGTGGTGT
TCGAGAGCAGCTCCCTGGCCAACCAGCAGTACGACCTGCAGATGCTGTTC
AAGGTG
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