mRNA_E-siliculosus-1a_F_contig1263.1623.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1263.1623.1 vs. uniprot
Match: A0A6H5L4M4_9PHAE (Resolvase/invertase-type recombinase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M4_9PHAE) HSP 1 Score: 139 bits (350), Expect = 1.290e-34 Identity = 77/180 (42.78%), Postives = 112/180 (62.22%), Query Frame = 1
Query: 19 RVCSLDMGERTFGTLYDPDGTIAFLGTDANTKVKNRLRVIYQKRNGLKTKLSYNKRLRVLNACRRSSAKLKNMIKDMHNRLADWLVGQYDLIIIGKLGIGVMKTK--RRGKRVLQSLSHFSFRRTLLQKATLARKVVKVVSEAYTTKQCNRCGYMNWTIGSSEVFSCKNCKIVCHRDVHS 552
RV SLDMG R FG+ Y DG+I F+G +A K+ + +KR LK KL +K ++ R+ S ++ N++ +MHN++A +LV YD+I++G+L GVMKTK R K + SL H+ FR+ L+ K V +V E TTK C+RCG++NW + + EVF+C CK C RD+HS
Sbjct: 400 RVVSLDMGSRKFGSFYSSDGSIGFIGEEAGEKLSR----LIKKREYLK-KLKESKS-KLTKGWRKVSKRIANLVNEMHNKVALYLVRNYDIIMVGRLSNGVMKTKSHRNQKLLHASLKHYQFRQRLINNGNDHGKKVAIVPEQLTTKLCDRCGFINWKMKAEEVFTCPKCKHSCDRDIHS 573
BLAST of mRNA_E-siliculosus-1a_F_contig1263.1623.1 vs. uniprot
Match: A0A845YEN4_9CYAN (Transposase n=2 Tax=Symploca sp. SIO2G7 TaxID=2607798 RepID=A0A845YEN4_9CYAN) HSP 1 Score: 94.4 bits (233), Expect = 1.870e-19 Identity = 59/194 (30.41%), Postives = 108/194 (55.67%), Query Frame = 1
Query: 16 SRVCSLDMGERTFGTLYDPDGTIAFLGTDANTKVKNRLRVIYQKRNGLKTKLSYNKRLRVLNACRRSSAKLKNMIKDMHNRLADWLVGQYDLIIIGKLGIG--VMKTKRR-GKRVLQSL---SHFSFRRTLLQKATLARKVVKVVSEAYTTKQCNRCGYMNWTIGSSEVFSCKNCKIVCHRDVHSGRGIFIRSM 579
+RV +LD G RTF T YD + +I +G+ +++ + + + + + +R + A R K++N++KD+HN+ A +LV Y ++ + V+K+KR+ K+ +++ SHF F++ LLQ A R +V + +E+YT+K C CG+++ +G ++ F C C HRD + R I IR++
Sbjct: 155 TRVIALDPGVRTFLTGYDGE-SIVEIGSGDIGRIQRLCAYLDKLMSRIDLSSAKRQRRAMRKASHRIRRKIQNLVKDLHNKAARFLVDNYKVVFLPTFDTSEMVVKSKRKLAKKTARNMLTWSHFKFKQHLLQMAQRERVIVVLCNESYTSKTCPECGHIHSKLGGNKKFQCPQCGYSAHRDWNGARNIMIRAL 347
BLAST of mRNA_E-siliculosus-1a_F_contig1263.1623.1 vs. uniprot
Match: A0A6M0BGJ5_9CYAN (Transposase n=10 Tax=unclassified Moorena TaxID=2683338 RepID=A0A6M0BGJ5_9CYAN) HSP 1 Score: 92.8 bits (229), Expect = 6.780e-19 Identity = 68/199 (34.17%), Postives = 106/199 (53.27%), Query Frame = 1
Query: 10 KTSRVCSLDMGERTFGTLYDPDGTIAFLGTDANTKVKNRLRVIYQKRNGLKTKLSYNK-RLRVLNACRRSSAKLKNMIKDMHNRLADWLVGQYDLIIIGKLGIGVM------KTKRRGKRVLQSLSHFSFRRTLLQKATLARKVVKVV--SEAYTTKQCNRCGYMNWTIGSSEVFSCKNCKIVCHRDVHSGRGIFIRSM 579
K RV +LD G R F T YD + + +G ++ NRL + TK + + R ++ A R K++ ++KD+H+++A +L+G+Y LI + M K R+ R + S SH+ F + L Q A ARK V VV +E+YT+K C CG+ + +G S++F C CK+ RD+ GR I IRS+
Sbjct: 153 KQERVIALDPGNRAFLTGYDGENVLE-IGKGDIGRI-NRLCSHLDQLLSRATKSPFKRQRHKMRKAADRIREKIQCLVKDLHSKVASFLIGKYKLIFLPTFATSKMVLKSSRKINRKTVRNMLSWSHYKFAQHLTQMA--ARKNVLVVRCNESYTSKTCTNCGHRHNKLGGSKIFRCPECKMELPRDIGGGRNIMIRSL 347
BLAST of mRNA_E-siliculosus-1a_F_contig1263.1623.1 vs. uniprot
Match: A0A6P0HQ39_9CYAN (Transposase n=3 Tax=unclassified Okeania TaxID=2634635 RepID=A0A6P0HQ39_9CYAN) HSP 1 Score: 90.9 bits (224), Expect = 3.750e-18 Identity = 55/199 (27.64%), Postives = 104/199 (52.26%), Query Frame = 1
Query: 1 VDIKTSRVCSLDMGERTFGTLYDPDGTIAFLGTDANTKVKNRLRVIYQKRNGLKTKLSYNKRLRVLNACRRSSAKLKNMIKDMHNRLADWLVGQYDLIIIGKLGIGVM------KTKRRGKRVLQSLSHFSFRRTLLQKATLARKVVKVVSEAYTTKQCNRCGYMNWTIGSSEVFSCKNCKIVCHRDVHSGRGIFIRSM 579
+ + S+V +LD G RTF T +D + + F D K++ + + + ++ +R + A R K+++++KD+HN++A +LV +Y +I + M K +R R + S SH+ F++ L+Q A +V + +E+YT+K C CG+++ +G ++ F C C HRD + R I +R++
Sbjct: 160 IPTEQSKVIALDPGVRTFLTGFDSEKIVEFGNGDMG-KIQRLCSHLDNLMSRIDLSVAKRQRRAMRKASYRIRGKIQSLVKDLHNKVAQFLVKEYKVIFLPTFSTSEMVVKSGRKLNKRTARNMLSWSHYKFQQHLIQMANRHNVLVVLCNESYTSKTCPECGHVHKQLGGNKQFHCPKCGYSAHRDWNGARNIMLRAL 357
BLAST of mRNA_E-siliculosus-1a_F_contig1263.1623.1 vs. uniprot
Match: A0A6P0U237_9CYAN (Transposase n=6 Tax=unclassified Okeania TaxID=2634635 RepID=A0A6P0U237_9CYAN) HSP 1 Score: 89.4 bits (220), Expect = 1.360e-17 Identity = 56/199 (28.14%), Postives = 100/199 (50.25%), Query Frame = 1
Query: 1 VDIKTSRVCSLDMGERTFGTLYDPDGTIAFLGTDANTKVKNRLRVIYQKRNGLKTKLSYNKRLRVLNACRRSSAKLKNMIKDMHNRLADWLVGQYDLIIIGKLGIGVM------KTKRRGKRVLQSLSHFSFRRTLLQKATLARKVVKVVSEAYTTKQCNRCGYMNWTIGSSEVFSCKNCKIVCHRDVHSGRGIFIRSM 579
+ K S+ ++D G RTF T YD + + F D K++ + + + + +R + A R ++++ IKD+HN++A +LV Y +I + M K RR R + S SH+ F++ L+Q A +V + +E+YT+K C CG+++ +G ++ F C C HRD + R I +R++
Sbjct: 160 IPTKKSKAIAVDPGVRTFLTGYDGEKIVEFGNGDMG-KIQRLCSHLDNLMSRIDLSVVKRQRRAMRKASYRIRERIQSHIKDLHNKVAQFLVNHYKIIFLPTFSTSGMVVKSGRKLNRRTARNMLSWSHYKFQQHLIQMANRHNVLVVLCNESYTSKTCPECGHVHKQLGGNKKFQCPKCGYTAHRDWNGARNIMLRAL 357
BLAST of mRNA_E-siliculosus-1a_F_contig1263.1623.1 vs. uniprot
Match: A0A1V0S8G3_9VIRU (Transposase n=1 Tax=Catovirus CTV1 TaxID=1977631 RepID=A0A1V0S8G3_9VIRU) HSP 1 Score: 89.4 bits (220), Expect = 2.620e-17 Identity = 44/132 (33.33%), Postives = 77/132 (58.33%), Query Frame = 1
Query: 208 RRSSAKLKNMIKDMHNRLADWLVGQYDLIIIGKLGIGVMKTKRRG------KRVLQSLSHFSFRRTLLQKATLARKVVKVVSEAYTTKQCNRCGYMNWTIGSSEVFSCKNCKIVCHRDVHSGRGIFIRSMSE 585
RR + ++KNM+ ++H + ++LV YD I+IG + + + +K KR+ SLS + F++ L K L +K V+E YT++ C+ CG+ N +G ++F CK CK RDV+ RGI+++ + +
Sbjct: 395 RRLNTRIKNMVNELHWKTINYLVNNYDNILIGDMSVKSIVSKNESTLARITKRIGYSLSLYLFKQRLEYKCKLNKKRYSEVNERYTSRMCSVCGWYNEKLGGDKIFECKECKRTIDRDVNGARGIYLKHLQK 526
BLAST of mRNA_E-siliculosus-1a_F_contig1263.1623.1 vs. uniprot
Match: A0A6P0XDS6_9CYAN (Transposase (Fragment) n=1 Tax=Okeania sp. SIO2D1 TaxID=2607792 RepID=A0A6P0XDS6_9CYAN) HSP 1 Score: 85.9 bits (211), Expect = 4.450e-17 Identity = 53/199 (26.63%), Postives = 103/199 (51.76%), Query Frame = 1
Query: 1 VDIKTSRVCSLDMGERTFGTLYDPDGTIAFLGTDANTKVKNRLRVIYQKRNGLKTKLSYNKRLRVLNACRRSSAKLKNMIKDMHNRLADWLVGQYDLIIIGKLGIGVM------KTKRRGKRVLQSLSHFSFRRTLLQKATLARKVVKVVSEAYTTKQCNRCGYMNWTIGSSEVFSCKNCKIVCHRDVHSGRGIFIRSM 579
V S+V +LD G RTF T +D + + F D K++ + + + + ++ +R + A R ++++++KD+HN++A +LV +Y +I + M K ++ R + S SH+ F++ L+Q A +V + +E+YT+K C CG+++ + ++ F C C HRD + R I +R++
Sbjct: 24 VPTSQSKVIALDPGVRTFLTGFDGEKIVEFGNGDMG-KIQRLCSHLDRLMSRIDLSVAKRQRRAMRKASYRIRERIQSLVKDLHNKVARFLVKEYKVIFLPTFSTSEMVVKSGRKLNKKTARNMLSWSHYKFQQHLIQMAQRHNVLVVLCNESYTSKTCPECGHIHKKLSGNKKFQCPQCGYTAHRDWNGARNIMLRAL 221
BLAST of mRNA_E-siliculosus-1a_F_contig1263.1623.1 vs. uniprot
Match: UPI001F5D8911 (transposase n=2 Tax=Phormidium TaxID=1198 RepID=UPI001F5D8911) HSP 1 Score: 88.2 bits (217), Expect = 4.710e-17 Identity = 62/195 (31.79%), Postives = 103/195 (52.82%), Query Frame = 1
Query: 19 RVCSLDMGERTFGTLYDPDGTIAFLGTDANTKVKNRLRVIYQKRNGLKTKLSYNKRLR--VLNACRRSSAKLKNMIKDMHNRLADWLVGQYDLIIIGKLGIGVM------KTKRRGKRVLQSLSHFSFRRTLLQKATLARKVVKVVSEAYTTKQCNRCGYMNWTIGSSEVFSCKNCKIVCHRDVHSGRGIFIRSM 579
RV +LD G RTF T YD + TI +G + ++ + Q + K LS NKR R + A R +K++N++KD+HN+ A +LV Y LI + M K + + R + + SH+ F + L Q A +V +E++T+K C+ CG+++ +G +++F C C RD + GR + +RS+
Sbjct: 204 RVIALDPGVRTFLTGYDGE-TILEIGQNDIGRINRLCTHLDQLMS--KIALSSNKRQRYKMRKAATRMRSKIQNLVKDLHNKSASFLVNNYKLIFLPTFETSQMVERQTRKIRSKTARNMLTWSHYKFAKHLEQIAVRNGVMVVRCNESFTSKTCSECGHIHEKLGGNKIFRCPECGYEAPRDWNGGRSVMLRSL 395
BLAST of mRNA_E-siliculosus-1a_F_contig1263.1623.1 vs. uniprot
Match: A0A6P0NGE5_9CYAN (Transposase (Fragment) n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0NGE5_9CYAN) HSP 1 Score: 82.8 bits (203), Expect = 1.550e-16 Identity = 49/134 (36.57%), Postives = 76/134 (56.72%), Query Frame = 1
Query: 202 ACRRSSAKLKNMIKDMHNRLADWLVGQYDLIIIGKLGIGVM------KTKRRGKRVLQSLSHFSFRRTLLQKATLARKVVKVV--SEAYTTKQCNRCGYMNWTIGSSEVFSCKNCKIVCHRDVHSGRGIFIRSM 579
A R K++ ++KD+H+++A +L+ +Y LI + M K R+ R + S SH+ F + L Q A ARK V VV +E+YT+K C CG+ + +G S++F C CK+ RD+ GR I IRS+
Sbjct: 20 AADRIREKIQCLVKDLHSKVASFLISKYKLIFLPTFATSKMVLKSSRKINRKTVRNMLSWSHYKFAQHLTQMA--ARKNVLVVRCNESYTSKTCTNCGHRHNKLGGSKIFRCPECKMELPRDIGGGRNIMIRSL 151
BLAST of mRNA_E-siliculosus-1a_F_contig1263.1623.1 vs. uniprot
Match: K9YGA5_HALP7 (Transposase, IS605 OrfB family n=3 Tax=Halothece sp. (strain PCC 7418) TaxID=65093 RepID=K9YGA5_HALP7) HSP 1 Score: 86.3 bits (212), Expect = 2.420e-16 Identity = 58/201 (28.86%), Postives = 102/201 (50.75%), Query Frame = 1
Query: 10 KTSRVCSLDMGERTFGTLYDPDGTIAFLGTDANTKVKNRLRVIYQKRNGLKTKL----SYNKRLRVLNACRRSSAKLKNMIKDMHNRLADWLVGQYDLIIIGKLGIGVMKTKRRGK------RVLQSLSHFSFRRTLLQKATLARKVVKVVSEAYTTKQCNRCGYMNWTIGSSEVFSCKNCKIVCHRDVHSGRGIFIRSMS 582
+T V +LD G RTF T YD + + + + R+ + + L +++ S KR ++ A + +++N++KD+HN++A +LV Y +I + M K + K R + +LSH F LL KA +V +E+YT+K C CG+++ +G S+ F C +C HRD + R I +R+++
Sbjct: 213 ETDSVIALDPGVRTFLTGYDGNRVL-----EVGERDLGRVNRLCTHLDDLLSRIAKCNSKRKRFKMRKAATQIRHRIQNLVKDLHNKVAKFLVSCYKVIFLPTFNTSEMVLKDKRKINSKTARSMMTLSHHKFAEHLLHKAKRKGVLVVRCNESYTSKTCPECGHIHDRLGGSKKFKCPSCGYTVHRDWNGARNIMLRALA 408 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1263.1623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1263.1623.1 >prot_E-siliculosus-1a_F_contig1263.1623.1 ID=prot_E-siliculosus-1a_F_contig1263.1623.1|Name=mRNA_E-siliculosus-1a_F_contig1263.1623.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=196bp VDIKTSRVCSLDMGERTFGTLYDPDGTIAFLGTDANTKVKNRLRVIYQKRback to top mRNA from alignment at E-siliculosus-1a_F_contig1263:14698..15285+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1263.1623.1 ID=mRNA_E-siliculosus-1a_F_contig1263.1623.1|Name=mRNA_E-siliculosus-1a_F_contig1263.1623.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=588bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1263:14698..15285+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1263:14698..15285+ >mRNA_E-siliculosus-1a_F_contig1263.1623.1 ID=mRNA_E-siliculosus-1a_F_contig1263.1623.1|Name=mRNA_E-siliculosus-1a_F_contig1263.1623.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1176bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1263:14698..15285+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |