mRNA_E-siliculosus-1a_F_contig1263.1622.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1263.1622.1
Unique NamemRNA_E-siliculosus-1a_F_contig1263.1622.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1263.1622.1 vs. uniprot
Match: A0A6H5K4R3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R3_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 1.200e-42
Identity = 100/165 (60.61%), Postives = 110/165 (66.67%), Query Frame = 3 
Query:  798 DKYTGFTPDVPDGSHLCRLVRDRRYRAGTTGGLSRQAFRRAVAPVHQFLAQIHPPPEPLACRWTNKSVVCGAVYIASVAASALAYGWAVASTVFVAMSTWAAVGSLLFPAGHGETHAQAVGVD----TRIGADAYRMGGRRRLPCRVKTHRRYGRRRGSGGYLKK 1280
            D YT FT  VPD S  CRLVR RRYRAGT GG+ RQ FRR +A +HQ LA+I PPPEP  CRW NKSVV GAVY+A+                FVA S WAAV SLLFP  H    AQAVGVD    TR+ AD Y MGGR R+PCR KT RR+GRRRG+ GYLKK
Sbjct:  255 DSYTSFTIRVPDESLRCRLVRGRRYRAGTPGGVRRQIFRRHLAALHQVLAEIDPPPEPPVCRWANKSVVVGAVYLAAAVXXXXXXXXXXXXXXFVATSIWAAVASLLFPVDHAR--AQAVGVDKPPITRLEADRYFMGGRHRVPCR-KTRRRHGRRRGNRGYLKK 416
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1263.1622.1 vs. uniprot
Match: A0A6H5K8U3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8U3_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 9.490e-40
Identity = 96/165 (58.18%), Postives = 114/165 (69.09%), Query Frame = 3 
Query:  798 DKYTGFTPDVPDGSHLCRLVRDRRYRAGTTGGLSRQAFRRAVAPVHQFLAQIHPPPEPLACRWTNKSVVCGAVYIASVAASALAYGWAVASTVFVAMSTWAAVGSLLFPAGHGETHAQAVGVD----TRIGADAYRMGGRRRLPCRVKTHRRYGRRRGSGGYLKK 1280
            D Y  FT  VPD S  CRLVR RRYRAG  GG+SRQ FRR +A +HQ LA+I PP     CRWTNK+V+ GA+Y A+  ASA+ YG+A A+  FVA   WAAV SL+FP  H  T ++AVGVD    TR+ AD Y MG R R+PCR KT RR+GRR G+ GYLKK
Sbjct:  329 DSYASFTIRVPDESLRCRLVRGRRYRAGLPGGVSRQIFRRHLAALHQVLAEIDPPRVSPVCRWTNKTVMVGAMYPAAAIASAVGYGFATAA--FVATCIWAAVASLMFPVDH--TRSEAVGVDKPLITRLEADRYFMGDRHRVPCR-KTRRRHGRR-GNRGYLKK 487
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1263.1622.1 vs. uniprot
Match: A0A6H5KZG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG6_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.880e-31
Identity = 69/105 (65.71%), Postives = 77/105 (73.33%), Query Frame = 3 
Query:  804 YTGFTPDVPDGSHLCRLVRDRRYRAGTTGGLSRQAFRRAVAPVHQFLAQIHPPPEPLACRWTNKSVVCGAVYIASVAASALAYGWAVASTVFVAMSTWAAVGSLL 1118
            YTGF P +P  S  CRL+R RRYRAGT+ GLSRQA RR  A V Q LA  HPPPEP ACRWTNKSVV GAVYI SV A AL+ G+A+A  +FV+M  WAAVG  L
Sbjct:  311 YTGFAPGLPGESRRCRLIRGRRYRAGTSSGLSRQALRRTAASVRQILAMRHPPPEPPACRWTNKSVVLGAVYITSVMAPALSCGFAIAPIIFVSMLIWAAVGFFL 415
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1263.1622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K4R3_9PHAE1.200e-4260.61PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K8U3_9PHAE9.490e-4058.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZG6_9PHAE1.880e-3165.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1263contigE-siliculosus-1a_F_contig1263:1663..2956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size687
Model size1296
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927784.8572412-CDS-E-siliculosus-1a_F_contig1263:1662..23491622927784.8572412-CDS-E-siliculosus-1a_F_contig1263:1662..2349Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1263 1663..2349 +
1696318679.1862197-CDS-E-siliculosus-1a_F_contig1263:1662..23491696318679.1862197-CDS-E-siliculosus-1a_F_contig1263:1662..2349Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1263 1663..2349 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927784.8680859-UTR-E-siliculosus-1a_F_contig1263:2349..29561622927784.8680859-UTR-E-siliculosus-1a_F_contig1263:2349..2956Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1263 2350..2956 +
1696318679.1943452-UTR-E-siliculosus-1a_F_contig1263:2349..29561696318679.1943452-UTR-E-siliculosus-1a_F_contig1263:2349..2956Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1263 2350..2956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1263.1622.1prot_E-siliculosus-1a_F_contig1263.1622.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1263 1663..2349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1263.1622.1

>prot_E-siliculosus-1a_F_contig1263.1622.1 ID=prot_E-siliculosus-1a_F_contig1263.1622.1|Name=mRNA_E-siliculosus-1a_F_contig1263.1622.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=229bp
PTPGLSPYSRIVSILSPGQKSTAAADTLLSVSAFFEQLAVKQIFPDVGEE
FFFDGHAHPECIFVEELPSVSPVSSSPHPSKQSLIQIIPPLNTERHSTKP
VLLLVPFSYHLTIGGRHRRGVGGESIDQSNQHPWRGRWRCRHQRLCIGRG
GRDGCGAKNWIFFASSSPVRVRDASKLHGLLPILVDAKRRGSHGLRRGHL
SVHRMRRLGVHGTCKICFIFVRLCLARY*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1263:1663..2956+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1263.1622.1 ID=mRNA_E-siliculosus-1a_F_contig1263.1622.1|Name=mRNA_E-siliculosus-1a_F_contig1263.1622.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1294bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1263:1663..2956+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCAACGCCGGGTCTGTCCCCGTACTCTCGAATAGTCTCAATTCTCTCTCC
CGGACAAAAAAGCACCGCCGCGGCTGACACGCTTCTTTCTGTCTCCGCTT
TTTTCGAACAACTTGCCGTCAAACAGATCTTCCCCGACGTCGGCGAGGAG
TTCTTCTTCGACGGACACGCGCACCCCGAGTGCATCTTTGTCGAGGAACT
GCCTTCGGTGAGTCCCGTCTCCAGCTCACCTCACCCCTCAAAACAGAGCT
TAATTCAAATCATCCCACCCCTCAACACAGAACGTCATTCAACAAAGCCT
GTGCTTTTGCTGGTTCCGTTTTCCTATCATTTGACGATAGGTGGCCGACA
TCGTCGAGGAGTGGGAGGAGAATCGATCGACCAGTCGAACCAACACCCTT
GGCGTGGACGATGGAGGTGTCGCCACCAACGGCTATGCATCGGACGTGGC
GGGCGTGATGGATGTGGAGCGAAGAACTGGATCTTCTTCGCCAGCAGCTC
TCCTGTTCGCGTACGTGATGCTTCGAAGCTACATGGTCTTCTGCCGATTC
TCGTTGATGCAAAGCGTCGTGGAAGCCATGGGCTTCGTCGCGGTCATCTC
TCAGTACATCGGATGCGTCGTCTGGGAGTGCACGGTACGTGCAAGATTTG
TTTCATCTTTGTTCGTTTGTGCCTCGCCCGCTATTAATAGAAGCTGCATC
GGAAGCGCACTTTTTTTTAACTCTCTTTTGCTCTTGCTCGTGTCCCATCG
TCGCGCGTAAATTGCTTCCACAGGCTCGTGCGGAGGCGACGTGGGACGAC
AAGTACACGGGCTTCACACCTGACGTACCCGACGGGTCCCATCTGTGCCG
ACTCGTCCGCGACAGACGTTATCGCGCCGGGACAACCGGTGGCTTGAGCC
GACAGGCGTTTCGGAGGGCCGTCGCACCCGTCCACCAGTTCCTCGCCCAG
ATCCATCCACCGCCGGAGCCACTTGCCTGTCGCTGGACCAACAAGTCGGT
CGTGTGTGGCGCGGTGTACATCGCGTCCGTCGCGGCGTCCGCGCTGGCGT
ACGGGTGGGCGGTAGCGTCCACCGTCTTCGTGGCCATGTCCACCTGGGCT
GCCGTCGGCTCCCTCTTGTTCCCAGCGGGTCACGGCGAAACACACGCGCA
AGCCGTTGGTGTCGACACTCGCATCGGGGCCGATGCGTACCGCATGGGCG
GTCGGCGCCGTCTGCCTTGTCGCGTCAAAACTCATCGTCGCTACGGCAGG
AGGAGGGGCAGCGGCGGATACCTCAAGAAGCAGCTGATGAAGGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1263:1663..2956+

>mRNA_E-siliculosus-1a_F_contig1263.1622.1 ID=mRNA_E-siliculosus-1a_F_contig1263.1622.1|Name=mRNA_E-siliculosus-1a_F_contig1263.1622.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1374bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1263:1663..2956+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCAACGCCGGGTCTGTCCCCGTACTCTCGAATAGTCTCAATTCTCTCTCC
CGGACAAAAAAGCACCGCCGCGGCTGACACGCTTCTTTCTGTCTCCGCTT
TTTTCGAACAACTTGCCGTCAAACAGATCTTCCCCGACGTCGGCGAGGAG
TTCTTCTTCGACGGACACGCGCACCCCGAGTGCATCTTTGTCGAGGAACT
GCCTTCGGTGAGTCCCGTCTCCAGCTCACCTCACCCCTCAAAACAGAGCT
TAATTCAAATCATCCCACCCCTCAACACAGAACGTCATTCAACAAAGCCT
GTGCTTTTGCTGGTTCCGTTTTCCTATCATTTGACGATAGGTGGCCGACA
TCGTCGAGGAGTGGGAGGAGAATCGATCGACCAGTCGAACCAACACCCTT
GGCGTGGACGATGGAGGTGTCGCCACCAACGGCTATGCATCGGACGTGGC
GGGCGTGATGGATGTGGAGCGAAGAACTGGATCTTCTTCGCCAGCAGCTC
TCCTGTTCGCGTACGTGATGCTTCGAAGCTACATGGTCTTCTGCCGATTC
TCGTTGATGCAAAGCGTCGTGGAAGCCATGGGCTTCGTCGCGGTCATCTC
TCAGTACATCGGATGCGTCGTCTGGGAGTGCACGGTACGTGCAAGATTTG
TTTCATCTTTGTTCGTTTGTGCCTCGCCCGCTATTAACCAACGCCGGGTC
TGTCCCCGTACTCTCGAATAGTCTCAATTCTCTCTCCCGGACAAAAAAGC
ACCGCCGCGGCTGACACGCTTCTTTCTGTCTCCGCTTTTTTCGAACAACT
TGCCGTCAAACAGATCTTCCCCGACGTCGGCGAGGAGTTCTTCTTCGACG
GACACGCGCACCCCGAGTGCATCTTTGTCGAGGAACTGCCTTCGGTGAGT
CCCGTCTCCAGCTCACCTCACCCCTCAAAACAGAGCTTAATTCAAATCAT
CCCACCCCTCAACACAGAACGTCATTCAACAAAGCCTGTGCTTTTGCTGG
TTCCGTTTTCCTATCATTTGACGATAGGTGGCCGACATCGTCGAGGAGTG
GGAGGAGAATCGATCGACCAGTCGAACCAACACCCTTGGCGTGGACGATG
GAGGTGTCGCCACCAACGGCTATGCATCGGACGTGGCGGGCGTGATGGAT
GTGGAGCGAAGAACTGGATCTTCTTCGCCAGCAGCTCTCCTGTTCGCGTA
CGTGATGCTTCGAAGCTACATGGTCTTCTGCCGATTCTCGTTGATGCAAA
GCGTCGTGGAAGCCATGGGCTTCGTCGCGGTCATCTCTCAGTACATCGGA
TGCGTCGTCTGGGAGTGCACGGTACGTGCAAGATTTGTTTCATCTTTGTT
CGTTTGTGCCTCGCCCGCTATTAA
back to top