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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1260.1614.1 vs. uniprot
Match: D8LNA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNA4_ECTSI) HSP 1 Score: 219 bits (557), Expect = 4.330e-64 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1
Query: 85 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARGANAGDQEIYKASVSKARDRAERRGNKLSSKQQRQAAKSRLGGHLVHTMLDSDDDG 426
MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARGANAGDQEIYKASVSKARDRAERRGNKLSSKQQRQAAKSRLGGHLVHTMLDSDDDG
Sbjct: 1 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARGANAGDQEIYKASVSKARDRAERRGNKLSSKQQRQAAKSRLGGHLVHTMLDSDDDG 114
BLAST of mRNA_E-siliculosus-1a_F_contig1260.1614.1 vs. uniprot
Match: A0A6H5K6N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N1_9PHAE) HSP 1 Score: 221 bits (563), Expect = 7.400e-64 Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1
Query: 85 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARGANAGDQEIYKASVSKARDRAERRGNKLSSKQQRQAAKSRLGGHLVHTMLDSDDDGN 429
MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARGANAGDQEIYKASVSKARDRAERRGNKLSSKQQRQAAKSRLGGHLVHTMLDSDDDGN
Sbjct: 1 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARGANAGDQEIYKASVSKARDRAERRGNKLSSKQQRQAAKSRLGGHLVHTMLDSDDDGN 115
BLAST of mRNA_E-siliculosus-1a_F_contig1260.1614.1 vs. uniprot
Match: A0A836CMD5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD5_9STRA) HSP 1 Score: 107 bits (266), Expect = 1.320e-21 Identity = 58/113 (51.33%), Postives = 76/113 (67.26%), Query Frame = 1
Query: 85 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARGANAGDQEIYKASVSKARDRAERRGNKLSSKQQRQAAKSRLGGHLVHTMLDSDDD 423
MSQC CFVGQC+RH LQDHGKR L +K+ +R+++ ++ Q+DK EA + DQ+ YK K RDRAERRGNKL+ +QQ +A K RLGGHLV+ M+DS D+
Sbjct: 1 MSQCGACFVGQCKRHPLQDHGKRTKDLMAKLPSKSETLKRVYETLLKKQVDKFEAQTNAVS--DQQAYKEKQGKERDRAERRGNKLTREQQEKAKKLRLGGHLVNLMIDSSDE 111
BLAST of mRNA_E-siliculosus-1a_F_contig1260.1614.1 vs. uniprot
Match: W7T9Z9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T9Z9_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 2.000e-10 Identity = 50/120 (41.67%), Postives = 72/120 (60.00%), Query Frame = 1
Query: 85 MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQLDKLEAAARG---ANAGDQEIYKASVSKARDRAERRGNKLSSKQQRQA-AKSRLGGHLVHTMLDSDDDGND 432
MS CP C+VGQC++HKLQDHG RE L S + Q+RL++ +V +D L+ + A AG Y+ +V K R++A+R+ +K S +Q R+A A L G L+ TML +D D D
Sbjct: 1 MSSCPQCYVGQCRKHKLQDHGARERALLSSRSE---LQRRLYESLVQPHVDTLKTTKKATAEAEAGHCR-YRDAVGKDREKAQRQKSKFSEEQVRKAQALGGLRGDLLRTMLANDSDFED 116
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 963 |
| Model size | 1734 |
| Exons | 4 |
| Ec32 ortholog | Ec-04_004580.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| EggNOG OGs | 2CDWX@1,2S5HT@2759 |
| Seed eggNOG ortholog | 2880.D8LNA4 |
| Seed ortholog evalue | 2e-55 |
| Seed ortholog score | 223.0 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1260.1614.1 >prot_E-siliculosus-1a_F_contig1260.1614.1 ID=prot_E-siliculosus-1a_F_contig1260.1614.1|Name=mRNA_E-siliculosus-1a_F_contig1260.1614.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=321bp
MSQCPHCFVGQCQRHKLQDHGKRELLLKSKMVDPKAAQQRLFDRVVTAQL
DKLEAAARGANAGDQEIYKASVSKARDRAERRGNKLSSKQQRQAAKSRLG
GHLVHTMLDSDDDGNDSDSDDGKGRAKGGRKSRDKKRKSRKDKKRKRRGS
GDEEGSSSGSDGSDSEGESRADRKRRRKDKKKERRHRGGGSNGKEKSSSE
KKKDRSDRKERKKERKERRRSEKKSKKRRRQEEGADGEGDGDDARNGDDK
GAPPPPANAAAGKMDVVVTNGGSGGAAAAAAAAVEAAAITMPAREEGAGI
ALPTRCRRRWCFEGWLLECR* back to topmRNA from alignment at E-siliculosus-1a_F_contig1260:27059..30541- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1260.1614.1 ID=mRNA_E-siliculosus-1a_F_contig1260.1614.1|Name=mRNA_E-siliculosus-1a_F_contig1260.1614.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3483bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1260:27059..30541- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGACAACCGACACATTGCCACTTGAGGGCGTCTCTGCTGTGCTCGAAACA
AAACGTATAACACCCCACCGCCAGCGCCGACGCCATGTCTCAGTGCCCTC
ACTGCTTCGTGGGGCAGTGCCAGAGGCACAAGCTGCAGGACCACGGCAAG
CGCGAGCTCCTCCTCAAGTCCAAGATGGTTGACCCCAAGGCCGCCCAGCA
GAGGCTGTTCGACCGCGTGGTGACAGCGCAACTCGACAAGCTGGAGGCCG
CGGCGCGAGGCGCCAACGCAGGAGACCAGGTATGATGACGAAGGGATATC
TAGTTGTGATGACCCGTCGGGGCGTGGCATAGTGCTTGGGGGGCTCTGCT
CTGCTCCTGCTGGTTTTATCTCGTCGTTAGGCATTTTTGAGACGGGAAAG
TTCTAGCCGAAGCGCGCCCACGTCGCCTCAACGCGGTAGGTGTTAGTACG
GACACTTGCTCTCGGCGCCCACGCTCTGCCCTGAGACTGCGGGGCGAACT
CGCGAATTATACCAACGCAGACAAACCAGTGTTCATCCTCGGTACTACCG
CCGCTCGCTTCGTGCGCGTAAGAATGAGAAGTTCTCAAATTGGTGCCATC
GAAGCCCACACCACCCGCACTACGTTGTAAATAAATGTTCCGACGTCCAG
AGGGGGAGTTGACCAGGATGGACAAGGGTCGCTTCCAAAGTTAGCCCACT
AGGGTTGCGTTCTACCATGTTTTAAGCAACACGCTGAAACAGCAATGATG
TTCTTGCTTGTAAAGGCTGTAAGGGTGATCTATCGCTCCAGGCAGTCCTG
TTAGTGAGGAATGAAGACGCACTGCCCGTCTACCGCAACGTTCGAGTGAT
GCGCTCAACACCTGCTGCCTGTAGACTCACTTGCTAAGCTCGATTACTCC
GCAAAGCGGCGCAAACAACTGCCCGACACAAGGAAGGAAACTTCTCGACG
AGATCTCTGCAGAGCGACTATTTTCCACGTTGGCGGCCTCTTGATTTGTG
GAGCAGTTTAGCTGTGCGATAACGGTCTAGGGGGTGTGCCATTGATCACC
CGCACTCGTATGTTGCATCGACCCGATTTCTCAGTCTACGATATCGTCAC
CTCATGTACGCGTACAACGATAGTCTTCTCGTTCCCCGGAGACCCACCCC
TCCATGCCGCACAGGTAGCTGCTTCTCTACCATGCTGCGTGTTGAAATAA
GCATCGAATGGCGAGTGCCACTGCTGTGCCGCATTTGGTTTCGCTGTCAA
CGGACAAGGTGCCCATGGCCAACCGTGGTTGTAACCAGCGAGGGAGGCAT
TTTTTCTTCTCACCGTCCCTCCCGGCCCCCCCTTCCTACTCGTTTTCACC
CCTGGGAAAACCCCCGACAATGGTTTACGTCTTCGAGATGAGCAGGAGAT
CTACAAAGCAAGCGTGTCTAAGGCGCGCGACCGCGCCGAGCGAAGGGGGA
ACAAGCTCTCCAGCAAGCAGCAGCGGCAGGCGGCCAAGTCTAGGCTGGGC
GGTCACCTCGTCCACACCATGCTAGACAGCGACGACGACGGCAACGACTC
CGATTCCGACGACGGGAAAGGGCGAGCCAAAGGCGGCAGAAAGAGCAGGG
ACAAGAAGCGCAAGAGCCGCAAGGACAAGAAGCGGAAGCGCAGGGGGAGC
GGCGACGAGGAAGGTAGCTCGAGCGGGAGCGACGGCAGCGACAGCGAGGG
GGAGAGCAGAGCCGACCGGAAGAGACGCAGGAAGGATAAGAAGAAGGAGC
GCCGCCATCGCGGCGGCGGCAGTAACGGCAAGGAAAAATCCTCGTCTGAG
AAGAAAAAGGATAGGTCGGACAGGAAGGAGAGGAAGAAGGAGCGCAAGGA
GCGACGCCGCAGCGAGAAGAAGGTGAGGCGGGGTTGAGGGGGCGACCAAC
CAGCGGTCGGCCAGCTATGGGGCATGTGACAGCGAGACCGGTGGTGTAGA
AGCGATGTCAAGTGGCGGGAGGAACGGCAGCAGACCAGTAAAAATTGAAC
AAGGACCGAAAGCGTGGTTGAAGGAAGCAACCGTGGTAGTTCTGTTGTGA
GGCGACTAATCGTTTATCGTGCCCCAAATGTGTTGGTCCCAACGTAGGCA
CACGACTGCGCGGGCTGGAATCCTGCTTAGGATTTCGAAAGAAAAAGCCC
TGAAAATGATATAGGGGGCGAAGGGCGAAGCAAAAACAACAGTTTTGTAG
AACTATCGGTGAAACCTGTAGGGGAAGTAGCGTTAAAACACTGCTTCGTA
TAATTTTTTCACGTATATTGTTCGACGTGCAGTACACCCCACGACAGTAT
AGGGGGACGTTCTCTAGGGTGCAGGGCGCTTGAGAGACTGCACCGATAGT
ACTTGGCCGCCCTTCACCTCGCCGTGCCCGCTTGAGGCCCGGGCTCCTGT
GTCGAAGCGATGCCGGACCAACCATTGACCGCCGCCGTCTGGCGCGTGAA
TCGCCGCGGCTCGTCTTGCACACTCCGTTACCGTTAACCAAACAGAGCAA
GAAGAGAAGACGGCAAGAAGAGGGTGCCGACGGAGAGGGAGACGGCGATG
ACGCCAGAAACGGCGACGATAAAGGCGCGCCGCCGCCGCCGGCTAATGCT
GCTGCTGGAAAAATGGATGTTGTTGTCACAAACGGCGGCAGTGGCGGGGG
CCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGGAAGCGGCAGCGATA
ACGATGCCGGCGAGGGAGGAGGGAGCAGGGATCGCGTTACCGACCCGCTG
TAGACGGCGGTGGTGCTTTGAGGGGTGGCTGTTGGAGTGCCGTTAGGTTC
TTCGTACAGAAAACGGCGGCGTTGTTAGCAGGCTTTCCTTTTGGCTGCAA
GCTGAACCCACCGGCTGGCTTTGAGTAGCTGCCCAGCTGGCTTTGAGCGT
TGAATCACGCGCCGAGCGTATGCTGTGTATCCCCGTCACCATCCTCGTCA
GATGCAGACCCCCCCCCCCCGGCGGCCCGGCAAAGAGTATTCCTTGACGC
CGGAAATCGGGTTCCTCGTTCCCGAGGCGTCTGGTACAGCAGTCACTTGT
GATGATGCGGTCCGCCTTCATGAGGTGTAAAACAGACGGCTTGAGCGTGC
AGAACATAGGCGAGCACATGGAATGCGCGCCATCCCTGCATGCAGCAGGG
TGGAATGGGTGGAGACACTAAAGTCTTGAGTATGGAGAATGTGTATGGGC
AAATCGGTGTGTTGTGTTGTGTTTTGTTTTCCCAGCTCTCCGATGAGGGT
AACCGGGCGCGTGGCCGGTTCATGGAAAGTGTGGGTGGGCTGTGATTAGG
ATGTGTAGGTGTAGAATATTATTTTGGCGTGTTTGGGTGGACAGTGTTAG
ATGTTTGAGGAATGGGCAGAGAAAAGGGTGTAATACGTTGGTTTCGACGA
GGTTGTGGAGTTTAGACGTCATGCATGCTGTCTCTCGTGTTGTAAAAACA
AAAAATGGGAATCGACCTAACGACATGAACGGC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1260:27059..30541- >mRNA_E-siliculosus-1a_F_contig1260.1614.1 ID=mRNA_E-siliculosus-1a_F_contig1260.1614.1|Name=mRNA_E-siliculosus-1a_F_contig1260.1614.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1926bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1260:27059..30541- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTCAGTGCCCTCACTGCTTCGTGGGGCAGTGCCAGAGGCACAAGCT
GCAGGACCACGGCAAGCGCGAGCTCCTCCTCAAGTCCAAGATGGTTGACC
CCAAGGCCGCCCAGCAGAGGCTGTTCGACCGCGTGGTGACAGCGCAACTC
GACAAGCTGGAGGCCGCGGCGCGAGGCGCCAACGCAGGAGACCAGATGTC
TCAGTGCCCTCACTGCTTCGTGGGGCAGTGCCAGAGGCACAAGCTGCAGG
ACCACGGCAAGCGCGAGCTCCTCCTCAAGTCCAAGATGGTTGACCCCAAG
GCCGCCCAGCAGAGGCTGTTCGACCGCGTGGTGACAGCGCAACTCGACAA
GCTGGAGGCCGCGGCGCGAGGCGCCAACGCAGGAGACCAGGAGATCTACA
AAGCAAGCGTGTCTAAGGCGCGCGACCGCGCCGAGCGAAGGGGGAACAAG
CTCTCCAGCAAGCAGCAGCGGCAGGCGGCCAAGTCTAGGCTGGGCGGTCA
CCTCGTCCACACCATGCTAGACAGCGACGACGACGGCAACGACTCCGATT
CCGACGACGGGAAAGGGCGAGCCAAAGGCGGCAGAAAGAGCAGGGACAAG
AAGCGCAAGAGCCGCAAGGACAAGAAGCGGAAGCGCAGGGGGAGCGGCGA
CGAGGAAGGTAGCTCGAGCGGGAGCGACGGCAGCGACAGCGAGGGGGAGA
GCAGAGCCGACCGGAAGAGACGCAGGAAGGATAAGAAGAAGGAGCGCCGC
CATCGCGGCGGCGGCAGTAACGGCAAGGAAAAATCCTCGTCTGAGAAGAA
AAAGGATAGGTCGGACAGGAAGGAGAGGAAGAAGGAGCGCAAGGAGCGAC
GCCGCAGCGAGAAGAAGGAGATCTACAAAGCAAGCGTGTCTAAGGCGCGC
GACCGCGCCGAGCGAAGGGGGAACAAGCTCTCCAGCAAGCAGCAGCGGCA
GGCGGCCAAGTCTAGGCTGGGCGGTCACCTCGTCCACACCATGCTAGACA
GCGACGACGACGGCAACGACTCCGATTCCGACGACGGGAAAGGGCGAGCC
AAAGGCGGCAGAAAGAGCAGGGACAAGAAGCGCAAGAGCCGCAAGGACAA
GAAGCGGAAGCGCAGGGGGAGCGGCGACGAGGAAGGTAGCTCGAGCGGGA
GCGACGGCAGCGACAGCGAGGGGGAGAGCAGAGCCGACCGGAAGAGACGC
AGGAAGGATAAGAAGAAGGAGCGCCGCCATCGCGGCGGCGGCAGTAACGG
CAAGGAAAAATCCTCGTCTGAGAAGAAAAAGGATAGGTCGGACAGGAAGG
AGAGGAAGAAGGAGCGCAAGGAGCGACGCCGCAGCGAGAAGAAGAGCAAG
AAGAGAAGACGGCAAGAAGAGGGTGCCGACGGAGAGGGAGACGGCGATGA
CGCCAGAAACGGCGACGATAAAGGCGCGCCGCCGCCGCCGGCTAATGCTG
CTGCTGGAAAAATGGATGTTGTTGTCACAAACGGCGGCAGTGGCGGGGAG
CAAGAAGAGAAGACGGCAAGAAGAGGGTGCCGACGGAGAGGGAGACGGCG
ATGACGCCAGAAACGGCGACGATAAAGGCGCGCCGCCGCCGCCGGCTAAT
GCTGCTGCTGGAAAAATGGATGTTGTTGTCACAAACGGCGGCAGTGGCGG
GGCAGCAGCAGCAGCAGCAGCAGCAGTGGAAGCGGCAGCGATAACGATGC
CGGCGAGGGAGGAGGGAGCAGGGATCGCGTTACCGACCCGCTGTAGACGG
CGGTGGTGCTTTGAGGGGTGGCTGTTGGAGTGCCGTTAGCAGCAGCAGCA
GCAGCAGCAGCAGTGGAAGCGGCAGCGATAACGATGCCGGCGAGGGAGGA
GGGAGCAGGGATCGCGTTACCGACCCGCTGTAGACGGCGGTGGTGCTTTG
AGGGGTGGCTGTTGGAGTGCCGTTAG back to top
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