mRNA_E-siliculosus-1a_F_contig1260.1610.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1260.1610.1
Unique NamemRNA_E-siliculosus-1a_F_contig1260.1610.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1260.1610.1 vs. uniprot
Match: D8LNA8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNA8_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 5.950e-54
Identity = 111/121 (91.74%), Postives = 111/121 (91.74%), Query Frame = 2 
Query:    2 SVLGIALLGGGKASLTFGMSLALSTLWRHGWWLYVQPECAPVLFLLSGTTADVALGFLLTSLLQIHRSPSXXXXXXXXXXXXXXXXXXXXXXXXHDASGSQADMWNAVTPPGLAGLRGRRT 364
            SVLGIALLGGGKASLTFGMSL LSTLWRHGWWLYVQPECAPVLFLLSGTTADVALGFLLTSLLQIHRSPSXXXXXXXXXXXXXXXX        H ASGSQADMWNAVTPPGLAGLRGRRT
Sbjct:  165 SVLGIALLGGGKASLTFGMSLGLSTLWRHGWWLYVQPECAPVLFLLSGTTADVALGFLLTSLLQIHRSPSXXXXXXXXXXXXXXXXVSAAAAHDHHASGSQADMWNAVTPPGLAGLRGRRT 285
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BLAST of mRNA_E-siliculosus-1a_F_contig1260.1610.1 vs. uniprot
Match: A0A6H5LJL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJL3_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 2.820e-29
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 2 
Query:    2 SVLGIALLGGGKASLTFGMSLALSTLWRHGWWLYVQPECAPVLFLLSGTTADVALGFLLTSLLQ 193
            SVLGIALLGGGKASLTFGMSL L+TLWRHGWWLYVQPECAPV FLLSGTTADVALGFLLTSLLQ
Sbjct: 1216 SVLGIALLGGGKASLTFGMSLGLTTLWRHGWWLYVQPECAPVFFLLSGTTADVALGFLLTSLLQ 1279
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1260.1610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNA8_ECTSI5.950e-5491.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5LJL3_9PHAE2.820e-2995.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1260contigE-siliculosus-1a_F_contig1260:191..2402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size312
Model size530
Exons2
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1260.1610.1prot_E-siliculosus-1a_F_contig1260.1610.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1260 246..2239 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927782.5755713-UTR-E-siliculosus-1a_F_contig1260:190..2451622927782.5755713-UTR-E-siliculosus-1a_F_contig1260:190..245Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1260 191..245 +
1696318678.068964-UTR-E-siliculosus-1a_F_contig1260:190..2451696318678.068964-UTR-E-siliculosus-1a_F_contig1260:190..245Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1260 191..245 +
1622927782.6163907-UTR-E-siliculosus-1a_F_contig1260:2239..24021622927782.6163907-UTR-E-siliculosus-1a_F_contig1260:2239..2402Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1260 2240..2402 +
1696318678.0955086-UTR-E-siliculosus-1a_F_contig1260:2239..24021696318678.0955086-UTR-E-siliculosus-1a_F_contig1260:2239..2402Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1260 2240..2402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927782.5879836-CDS-E-siliculosus-1a_F_contig1260:245..3831622927782.5879836-CDS-E-siliculosus-1a_F_contig1260:245..383Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1260 246..383 +
1696318678.0774953-CDS-E-siliculosus-1a_F_contig1260:245..3831696318678.0774953-CDS-E-siliculosus-1a_F_contig1260:245..383Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1260 246..383 +
1622927782.6014714-CDS-E-siliculosus-1a_F_contig1260:2065..22391622927782.6014714-CDS-E-siliculosus-1a_F_contig1260:2065..2239Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1260 2066..2239 +
1696318678.0863369-CDS-E-siliculosus-1a_F_contig1260:2065..22391696318678.0863369-CDS-E-siliculosus-1a_F_contig1260:2065..2239Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1260 2066..2239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1260.1610.1

>prot_E-siliculosus-1a_F_contig1260.1610.1 ID=prot_E-siliculosus-1a_F_contig1260.1610.1|Name=mRNA_E-siliculosus-1a_F_contig1260.1610.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=104bp
MSLALSTLWRHGWWLYVQPECAPVLFLLSGTTADVALGFLLTSLLQIHRS
PSPPPPPRSESQDSSRPQASAAAAHPHDASGSQADMWNAVTPPGLAGLRG
RRT*
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mRNA from alignment at E-siliculosus-1a_F_contig1260:191..2402+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1260.1610.1 ID=mRNA_E-siliculosus-1a_F_contig1260.1610.1|Name=mRNA_E-siliculosus-1a_F_contig1260.1610.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2212bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1260:191..2402+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCGGTGCTCGGGATCGCGCTTCTCGGGGGCGGGAAGGCGAGCCTCACGT
TCGGGATGTCGCTGGCGCTGTCTACGCTGTGGAGGCACGGGTGGTGGTTG
TACGTTCAGCCGGAGTGCGCCCCGGTGTTGTTCCTGCTGTCGGGAACGAC
GGCTGATGTCGCCCTGGGGTTCCTGCTGACTTCGCTGCTCCAGGTGAGGG
CTAAGAACGCCGGTTCGCGCGGAAACGTTGAGGCTGCTATTGGCAATCCC
ACCACGCCATCTGCTGTCGGTGCTGTGGGAACGATGCTCTTTCCTCTCGA
GAACGCATGGTCTAACCGTTTAAGACATGCGAAACATGGGTTCCCACCAC
CCACCCCCTCTGCTGCAAACCCCCGATGAGGCCATCGGTGATCGATCATG
TGGGAACAATGCTCTGTCCTCTCAAGGACTCGTGGTCAATGGTCTAACAG
CTACGACATGCGAAACACGAGTACCCCCCCCCCCCGAAGAGACTACCCTC
CCCCCCCCGATGTTTGCCATCGGGGTTGGGTTTTCGTCGCGTGGCAACGA
CGTTGTAAAAGAAGCCAATTCACTTCGTGAACTCGGCAACCAGGTTACCG
GTTTTTTTTTTACGTCTTTTTTTTTTGGCGGTAACCATAATGGTGGTCGA
GTAGATCATGTTGTGCGGGGTGGAGAACCCTCACTCCGCGCAAGGGGGAT
GATCGCACCACGTTGTGTTAAAATGGTCAAGCATCCTCGAGGCAGTTACA
CAGTGCTTACAACTGTCTCTGGAATTGAAAGGACCAGAAATAAATTAAGT
CATACGCTGCTGTCATCCGTACGCAAAGGAAGTAAGCAGAGATGCCGAAC
ACCCTTGGCAGGATGCAGCTCACCCTTCATGCGACTCGCCGAATACCTCA
CGGCGCTTCGCGCTTGGTAATGTGAGAGCCTGGTCCGGTGAGAACCCGGC
GTGCTCCGTCCCGGCTTTGTAGGGATGCGAGGTCAATGATCTATCTACTA
CGGCATGCACGACTATGAGTACACCCCCCCCCCGAAGAGACTACTATGAG
CCCCTTGTTTGTACCAACGCTTCGTTAGTTTAGCTAGCTCGAGGTGGCAC
GCTGCCTGCGCCGTCGTGACGTGAACCAGCCAGCCTCTTTGCGAATGCGG
CGAGTTATTGTGCACGTGTCCAGTCGCTCCGAAGCTTGATCCTTTCATTG
AAACCATCAAGTGGCCGTACACCACAGTAGCACCTTGTCTGTCTCTCGCA
ACTCCCGTGCGTGGTTTCGTGAAGCGTACCACCAGAGGTTTGTCGGGGGT
GTACAGTTTGAGGTGACTAACTGTTGGAAAAGGTGCGGTTTCGAGGCGTT
CGCCTGTGCCTTTTCTTGCGGCTTACGGCCGTTTTGGTTGAGTTGGTTGG
CGCGTGCACCCACCGTTCGATCGTCTGGAGGTTGGGCAAAGCCATATGCT
CCCGTCACCACCGGTACTTCTCGCGTTTGTTAGCAGTTCGTGTCCAAACA
TATTTTCGATCGTCGGTCTCGGACGGAGCACTTATTGCGTTCGCTGTGAA
TCGTTGCGACAAGAGTCGACCAATTTCTGCGCTTGTGTTTGAAGTCGAAC
CCCCCCGGCCCTCATCCATCCGTGCATCCGCGGAGAACACTGCTCTTTTC
TCTGCGACGAGGTTGAACGATGTAGCCAATAGGTTGGTACATCACTATGC
TCGGGGCTAGGTTGCGAGGGGAAAGAAAATCCCCTCGGCGCGCCAGTCCC
GGGCACGCCGTTGATTTTGTGCACGGGACCAAGAATATCGTAACACTGAA
TGAAATTTGCAAGAAAAGAGTAAAAAGTACTCCGCCCTCCCCGCCCATCT
CTCCCACGTGCCGATCGATCAACAGATTCACCGCTCGCCATCTCCGCCAC
CACCCCCGCGGTCCGAATCTCAAGATTCGTCTAGGCCGCAGGCCTCCGCT
GCAGCGGCGCATCCTCACGACGCCTCGGGTTCGCAGGCGGACATGTGGAA
CGCCGTGACACCACCCGGCCTTGCCGGTTTGCGCGGCCGTAGAACTTAGC
TCTTGGGATACATGGATGTGGTTTTTTTCCGGGGGGGATTTTCGTTTCGC
CAAGTAATCTTGTGCGAGGTAGTATGCCAAGAGCGAGAGAGAGATAAGGA
AGAGCAAACGTTTAAGAGAGTTTTAGCAAATGGAAGATGGAACAGGAATC
GACAAGTCTCCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1260:191..2402+

>mRNA_E-siliculosus-1a_F_contig1260.1610.1 ID=mRNA_E-siliculosus-1a_F_contig1260.1610.1|Name=mRNA_E-siliculosus-1a_F_contig1260.1610.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1260:191..2402+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCGCTGGCGCTGTCTACGCTGTGGAGGCACGGGTGGTGGTTGTACGT
TCAGCCGGAGTGCGCCCCGGTGTTGTTCCTGCTGTCGGGAACGACGGCTG
ATGTCGCCCTGGGGTTCCTGCTGACTTCGCTGCTCCAGATGTCGCTGGCG
CTGTCTACGCTGTGGAGGCACGGGTGGTGGTTGTACGTTCAGCCGGAGTG
CGCCCCGGTGTTGTTCCTGCTGTCGGGAACGACGGCTGATGTCGCCCTGG
GGTTCCTGCTGACTTCGCTGCTCCAGATTCACCGCTCGCCATCTCCGCCA
CCACCCCCGCGGTCCGAATCTCAAGATTCGTCTAGGCCGCAGGCCTCCGC
TGCAGCGGCGCATCCTCACGACGCCTCGGGTTCGCAGGCGGACATGTGGA
ACGCCGTGACACCACCCGGCCTTGCCGGTTTGCGCGGCCGTAGAACTTAG
ATTCACCGCTCGCCATCTCCGCCACCACCCCCGCGGTCCGAATCTCAAGA
TTCGTCTAGGCCGCAGGCCTCCGCTGCAGCGGCGCATCCTCACGACGCCT
CGGGTTCGCAGGCGGACATGTGGAACGCCGTGACACCACCCGGCCTTGCC
GGTTTGCGCGGCCGTAGAACTTAG
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