mRNA_E-siliculosus-1a_F_contig126.1608.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig126.1608.1
Unique NamemRNA_E-siliculosus-1a_F_contig126.1608.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig126.1608.1 vs. uniprot
Match: D8LBT2_ECTSI (DJ-1_PfpI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBT2_ECTSI)

HSP 1 Score: 436 bits (1121), Expect = 9.330e-150
Identity = 225/227 (99.12%), Postives = 225/227 (99.12%), Query Frame = 1
Query:   67 MPKILLVLTSSKMMGEKETGFWLEEAAAPHAIFTDAGYEVDIASPEGGAPPVDAGSKADAYLTDYTRRFDADAAAQAKLAATTKLSDVDSSAYAAVFFAGGHGTCVDFPNNPSVQGVMEKVYGAGGVISAVCHGPTAFVGAKTAAGAALVSGKKMTGFTDTEEAQVGLTDKVPFLLEAKLIELGADFSKVDPWTPYAVVDGRVVTGQNPMSSELTAQKVVEVLKASA 747
            MPKILLVLTSSKMMGEKETGFWLEEAAAPHAIFTDAGYEVDIASPEGGAPPVDAGSKADAYLTDYTRRFDADAAAQAKLAATTKLSDVDSSAYAAVFFAGGHGTCVDFPNNPSVQGVMEKVYGAGGVISAVCHGPTAFVGAKTA GAALVSGKKMTGFTDTEEAQVGLTDKVPFLLEAKLIELGADFSK DPWTPYAVVDGRVVTGQNPMSSELTAQKVVEVLKASA
Sbjct:    1 MPKILLVLTSSKMMGEKETGFWLEEAAAPHAIFTDAGYEVDIASPEGGAPPVDAGSKADAYLTDYTRRFDADAAAQAKLAATTKLSDVDSSAYAAVFFAGGHGTCVDFPNNPSVQGVMEKVYGAGGVISAVCHGPTAFVGAKTADGAALVSGKKMTGFTDTEEAQVGLTDKVPFLLEAKLIELGADFSKADPWTPYAVVDGRVVTGQNPMSSELTAQKVVEVLKASA 227          
BLAST of mRNA_E-siliculosus-1a_F_contig126.1608.1 vs. uniprot
Match: A0A6U0IZP5_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IZP5_9STRA)

HSP 1 Score: 225 bits (573), Expect = 3.300e-67
Identity = 120/226 (53.10%), Postives = 151/226 (66.81%), Query Frame = 1
Query:   67 MPKILLVLTSSKMMGEKETGFWLEEAAAPHAIFTDAGYEVDIASPEGGAPPVDAGSKADAYLTDYTRRFDADAAAQAKLAATTKLSDVDSSAYAAVFFAGGHGTCVDFPNNPSVQGVMEKVYGAGGVISAVCHGPTAFVGA-KTAAGAALVSGKKMTGFTDTEEAQVGLTDKVPFLLEAKLIELGADFSKVDPWTPYAVVDGRVVTGQNPMSSELTAQKVVEVLKA 741
            MPKI++V TS+  +   +TG WLEE AAP+  F DAGYE++IASP GG  P+DAGS  +A+LTD  ++F  D  A   L+ TTKLS  D SA  A+FF GGHGTCVDF ++ SV+G +E +YGAG V++AVCHGPT      K      LV    +TGFTDTEE  V LT KVPFLLE KL E G  F + D W P   VDG+++TGQNP SSE  A+  +++L A
Sbjct:    1 MPKIIIVSTSAPELAGHKTGLWLEECAAPYYKFKDAGYEIEIASPAGGPVPLDAGSLGEAFLTDACKKFLFDPEAMGMLSHTTKLSAADLSAADAIFFCGGHGTCVDFIDDASVKGAIETLYGAGKVVAAVCHGPTCLPQCTKPGTDEPLVKDLVVTGFTDTEEEAVQLTGKVPFLLEQKLKEQGGKFERADDWNPKVCVDGKLITGQNPQSSEACAEATIKMLSA 226          
BLAST of mRNA_E-siliculosus-1a_F_contig126.1608.1 vs. uniprot
Match: A0A830H344_9CHLO (DJ-1_PfpI domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H344_9CHLO)

HSP 1 Score: 215 bits (547), Expect = 2.990e-63
Identity = 117/228 (51.32%), Postives = 151/228 (66.23%), Query Frame = 1
Query:   73 KILLVLTSSKMMG---EKETGFWLEEAAAPHAIFTDAGYEVDIASPEGGAPPVDAGSKADAYLTDYTRRFDADAAAQAKLAATTKLSDVDSSAYAAVFFAGGHGTCVDFPNNPSVQGVMEKVYGAGGVISAVCHGPTAFVGAKTAAGAALVSGKKMTGFTDTEEAQVGLT----DKVPFLLEAKLIELGADFSKVDPWTPYAVVDGRVVTGQNPMSSELTAQKVVEVL 735
            K+LLV TS+   G   +K++G W EE A P+ +F DAG  V IASP GG  P+DAGSKADA++TDYTR+FDADA A A L ++TKLSDVD++ + AV+ AGGH T  DFP+N  +  ++E +Y AG V++A CHGP   V  K A G  LVSG  +TGF DTEE  VGL     D +PF L+ K  ELG +F     W+  AV  G+++TGQNP SSE  AQ ++  L
Sbjct:    5 KVLLVCTSASKWGKDQDKDSGAWYEEVACPYYVFKDAGLSVVIASPLGGPIPIDAGSKADAFMTDYTRKFDADADALAVLNSSTKLSDVDAATFDAVYLAGGHATYTDFPDNKELIAIVETLYNAGKVVAADCHGPVGLVNCKKADGTPLVSGLNVTGFLDTEEQAVGLDPVKCDVLPFSLQQKFTELGGNFQAGADWSSNAVSAGKLITGQNPQSSEQVAQAMLTAL 232          
BLAST of mRNA_E-siliculosus-1a_F_contig126.1608.1 vs. uniprot
Match: UPI00146C4373 (type 1 glutamine amidotransferase domain-containing protein n=1 Tax=Pseudonocardia acidicola TaxID=2724939 RepID=UPI00146C4373)

HSP 1 Score: 214 bits (544), Expect = 6.460e-63
Identity = 113/224 (50.45%), Postives = 152/224 (67.86%), Query Frame = 1
Query:   73 KILLVLTSSKMMGE--KETGFWLEEAAAPHAIFTDAGYEVDIASPEGGAPPVDAGSKADAYLTDYTRRFDADAAAQAKLAATTKLSDVDSSAYAAVFFAGGHGTCVDFPNNPSVQGVMEKVYGAGGVISAVCHGPTAFVGAKTAAGAALVSGKKMTGFTDTEEAQVGLTDKVPFLLEAKLIELGADFSKVDPWTPYAVVDGRVVTGQNPMSSELTAQKVVEVLK 738
            KIL+VLTS   +G+    TGFWLEE AAP+ +F DAG E+ +ASP GG PP+D  S      T+ T+RF AD AA+A LA T KL+DV +  + AVF+ GGHG   D P+N +   ++EK   AG  I AVCH P A V  +T  GA+ V+GK++TGF+++EEA VGLTD VPFLL+ +LIE G  + + + W P+  VDGR+VTGQNP SS   AQ+++ +L+
Sbjct:    2 KILMVLTSHDRLGDTGNPTGFWLEEFAAPYYVFADAGAEITLASPAGGQPPLDPKSDEPDAQTEATKRFQADEAAEALLANTVKLADVSAEDFDAVFYPGGHGPMWDLPDNETSIALIEKFLAAGKPIGAVCHAPAALVNVRTQDGASFVAGKRVTGFSNSEEAGVGLTDVVPFLLQDRLIERGGGYGRAEDWAPHVEVDGRLVTGQNPASSAPAAQELLALLR 225          
BLAST of mRNA_E-siliculosus-1a_F_contig126.1608.1 vs. uniprot
Match: A0A7S4I150_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I150_9STRA)

HSP 1 Score: 213 bits (542), Expect = 1.360e-62
Identity = 113/224 (50.45%), Postives = 149/224 (66.52%), Query Frame = 1
Query:   67 MPKILLVLTSSKMMGEKETGFWLEEAAAPHAIFTDAGYEVDIASPEGGAPPVDAGSKADAYLTDYTRRFDADAAAQAKLAATTKLSDVDSSAYAAVFFAGGHGTCVDFPNNPSVQGVMEKVYGAGGVISAVCHGPTAFVGA-KTAAGAALVSGKKMTGFTDTEEAQVGLTDKVPFLLEAKLIELGADFSKVDPWTPYAVVDGRVVTGQNPMSSELTAQKVVEVL 735
            M K ++V TS+  +   +TG WLEE AAP+  F +AGYE+DIASP GG  P+D+GS  + +LTD  ++F  D  A   L+ T+KLSDVD SA  A+FF GGHGTCVDF ++ SV+G +E +YGA  V++AVCHGP       K  +   LV G  +TGFTDTEE+ V L  KVPFLLE KL E G  F + D W     +DG++VTGQNP SSE  A+ V++++
Sbjct:    1 MTKAIIVSTSAPELAGHKTGLWLEECAAPYYKFKEAGYEIDIASPAGGPVPLDSGSLQEMFLTDACKKFLFDPEAMGMLSHTSKLSDVDLSAADAIFFCGGHGTCVDFIDDASVKGAIETLYGADKVVAAVCHGPNCLPQCVKPGSTDPLVKGLTVTGFTDTEESAVQLASKVPFLLEQKLKEQGCIFERADDWNSKVCIDGKLVTGQNPQSSEACAEAVIKII 224          
BLAST of mRNA_E-siliculosus-1a_F_contig126.1608.1 vs. uniprot
Match: A0A2G1MGR6_9RHOB (Type 1 glutamine amidotransferase domain-containing protein n=1 Tax=Limimaricola cinnabarinus TaxID=1125964 RepID=A0A2G1MGR6_9RHOB)

HSP 1 Score: 212 bits (539), Expect = 3.790e-62
Identity = 111/226 (49.12%), Postives = 152/226 (67.26%), Query Frame = 1
Query:   67 MPKILLVLTSSKMMGE--KETGFWLEEAAAPHAIFTDAGYEVDIASPEGGAPPVDAGSKADAYLTDYTRRFDADAAAQAKLAATTKLSDVDSSAYAAVFFAGGHGTCVDFPNNPSVQGVMEKVYGAGGVISAVCHGPTAFVGAKTAAGAALVSGKKMTGFTDTEEAQVGLTDKVPFLLEAKLIELGADFSKVDPWTPYAVVDGRVVTGQNPMSSELTAQKVVEVLK 738
            M KIL++LTS   +G+  ++TGFWLEE AAP+ +F DAG EV +ASP+GG PP+D  S A+ + TD TRRF  D AAQ +LA+T +L ++  + Y AVF+ GGHG   D   NP  + ++E     G  + AVCH P  F   +T  G  LV G+K+TGFT+ EE  VGLTD VPFLLE  L E GA++ K + W P+ V DG++VTGQNP SSE  A+K++++++
Sbjct:    1 MTKILMILTSHDRLGDTGEKTGFWLEEFAAPYYVFKDAGVEVTLASPQGGQPPLDPKSDAEDFQTDATRRFKEDKAAQEQLASTERLDEIYPTQYDAVFYPGGHGPMWDLAENPDSRRIIETFVTEGRPLGAVCHAPAVFRHTQTEDGKPLVEGRKLTGFTNGEEEGVGLTDVVPFLLEDMLKEKGAEYQKGEDWAPFVVTDGKLVTGQNPASSEEAAKKLLDLVE 226          
BLAST of mRNA_E-siliculosus-1a_F_contig126.1608.1 vs. uniprot
Match: A0A2S0IP02_9GAMM (Type 1 glutamine amidotransferase domain-containing protein n=4 Tax=Idiomarinaceae TaxID=267893 RepID=A0A2S0IP02_9GAMM)

HSP 1 Score: 211 bits (537), Expect = 7.750e-62
Identity = 111/225 (49.33%), Postives = 153/225 (68.00%), Query Frame = 1
Query:   73 KILLVLTSSKMMGE--KETGFWLEEAAAPHAIFTDAGYEVDIASPEGGAPPVDAGSKADAYLTDYTRRFDADAAAQAKLAATTKLSDVDSSAYAAVFFAGGHGTCVDFPNNPSVQGVMEKVYGAGGVISAVCHGPTAFVGAKTAAGAALVSGKKMTGFTDTEEAQVGLTDKVPFLLEAKLIELGADFSKVDPWTPYAVVDGRVVTGQNPMSSELTAQKVVEVLKA 741
            KIL+VLTS   +G+   +TGFW+EE AAP+ +FTDAG EV IASP+GG PP+D  S A+   T+ TRRFD D +AQ KLA + KL +++   + A+F+ GGHG   D  N+     ++E+ +  G  ++AVCH P   + AKT AG  +V G+ +TGF+++EE  VGLT  VPFLLE  L E G  + KVD W  YAV DG ++TGQNP SSE TA+++++VL+A
Sbjct:    2 KILMVLTSHDELGDTGNKTGFWVEEFAAPYYVFTDAGAEVTIASPKGGQPPIDPNSAAEDAQTEATRRFDNDESAQQKLATSCKLDEINVDDFDAIFYPGGHGPLWDLTNDEHSIHLIEQFWSKGKPVAAVCHAPAVLLNAKTPAGDPIVQGRTVTGFSNSEEEAVGLTSVVPFLLEDALGEKGGHYRKVDDWQAYAVQDGMLITGQNPASSEQTAERLLDVLRA 226          
BLAST of mRNA_E-siliculosus-1a_F_contig126.1608.1 vs. uniprot
Match: A0A259L1Q6_9GAMM (Type 1 glutamine amidotransferase domain-containing protein n=3 Tax=Idiomarinaceae TaxID=267893 RepID=A0A259L1Q6_9GAMM)

HSP 1 Score: 211 bits (536), Expect = 1.020e-61
Identity = 114/225 (50.67%), Postives = 152/225 (67.56%), Query Frame = 1
Query:   73 KILLVLTSSKMMGEK--ETGFWLEEAAAPHAIFTDAGYEVDIASPEGGAPPVDAGSKADAYLTDYTRRFDADAAAQAKLAATTKLSDVDSSAYAAVFFAGGHGTCVDFPNNPSVQGVMEKVYGAGGVISAVCHGPTAFVGAKTAAGAALVSGKKMTGFTDTEEAQVGLTDKVPFLLEAKLIELGADFSKVDPWTPYAVVDGRVVTGQNPMSSELTAQKVVEVLKA 741
            KIL+VLTS + +G+   +TGFW EE AAP+  F DAG EV +ASP+GG PP+D  S+     T+ T R   D AA  +LA T KLSDV +  + A+F+ GGHG   D   +P   G++++ +     ++AVCH P   V AKT AG  LV G+K++GFT++EEA VGLTD VPFLLE KL ELG  + KVD W PYAVVDG ++TGQNP SSE  A+++++ LK+
Sbjct:    2 KILMVLTSHEQLGDSGHKTGFWAEEFAAPYYAFKDAGAEVVLASPKGGQPPIDPNSEQADAQTNATVRLFEDEAAMTQLANTLKLSDVTADEFDAIFYPGGHGPLWDLSQDPLSIGLIQQFWEQEKPVAAVCHAPAVLVNAKTPAGEPLVKGRKVSGFTNSEEAAVGLTDVVPFLLEDKLKELGGLYEKVDDWKPYAVVDGNLITGQNPASSEAVAEQLLKKLKS 226          
BLAST of mRNA_E-siliculosus-1a_F_contig126.1608.1 vs. uniprot
Match: A0A8J3KFY5_9ACTN (Dimethylallyltransferase n=4 Tax=Catellatospora TaxID=53365 RepID=A0A8J3KFY5_9ACTN)

HSP 1 Score: 211 bits (536), Expect = 1.120e-61
Identity = 110/224 (49.11%), Postives = 149/224 (66.52%), Query Frame = 1
Query:   73 KILLVLTSSKMMGE--KETGFWLEEAAAPHAIFTDAGYEVDIASPEGGAPPVDAGSKADAYLTDYTRRFDADAAAQAKLAATTKLSDVDSSAYAAVFFAGGHGTCVDFPNNPSVQGVMEKVYGAGGVISAVCHGPTAFVGAKTAAGAALVSGKKMTGFTDTEEAQVGLTDKVPFLLEAKLIELGADFSKVDPWTPYAVVDGRVVTGQNPMSSELTAQKVVEVLK 738
            K+L+V+TS   +G+  ++TGFWLEE AAP+  F DAG++V +ASP GG PP+D  S    + TD TRRF+ADA A+A+L  T +L  V +  +  VF+ GGHG   D   +P+   ++E+V  +G  I+ VCH P A    KT  G  LV+G+K+TGFTDTEE  VGLT  VPFL+E +L+  GA FSK D W PY V DGR+VTGQNP SS   A K++ +++
Sbjct:    2 KVLMVITSHDQLGDTGRKTGFWLEELAAPYYRFRDAGWDVTLASPRGGRPPLDPKSNEPDFQTDLTRRFEADADAEAQLDTTLRLDSVSADDFDTVFYPGGHGPMWDLAEDPTSIALIEQVVRSGKAIALVCHAPGALRHVKTPEGTPLVAGRKVTGFTDTEEEAVGLTKVVPFLVEDELVAKGAHFSKADDWQPYVVTDGRLVTGQNPASSGPAADKLISLVQ 225          
BLAST of mRNA_E-siliculosus-1a_F_contig126.1608.1 vs. uniprot
Match: UPI0012659862 (type 1 glutamine amidotransferase domain-containing protein n=1 Tax=Marinobacter changyiensis TaxID=2604091 RepID=UPI0012659862)

HSP 1 Score: 210 bits (535), Expect = 1.480e-61
Identity = 112/226 (49.56%), Postives = 150/226 (66.37%), Query Frame = 1
Query:   73 KILLVLTSSKMMGEK--ETGFWLEEAAAPHAIFTDAGYEVDIASPEGGAPPVDAGSKADAYLTDYTRRFDADAAAQAKLAATTKLSDVDSSAYAAVFFAGGHGTCVDFPNNPSVQGVMEKVYGAGGVISAVCHGPTAFVGAKTAAGAALVSGKKMTGFTDTEEAQVGLTDKVPFLLEAKLIELGADFSKVDPWTPYAVVDGRVVTGQNPMSSELTAQKVVEVLKAS 744
            K+L+VLTS   +G+   +TGFWLEE  AP+ +F DAG ++ +ASP+GG PPVD  S+A+  LT  TRRF+ DA A+  LA+T KL+DVD S + A+F+ GGHG   D  NN     +++  Y    VI AVCH P  F   +   G  +V G+K+TGF+++EE  VGLT+ VPFLLE  L E  A +SK D W PY VVDG+++TGQNP SSE  A+ VV+ L+ S
Sbjct:    2 KVLMVLTSHDQLGDSGNKTGFWLEEFTAPYYVFKDAGADITLASPKGGQPPVDPASEAEEALTATTRRFEEDAHAKESLASTKKLADVDMSQFDAIFYPGGHGPMWDLANNEKSIALIKTAYEQDKVICAVCHAPAVFRNVEVKPGQNIVGGRKVTGFSNSEEEAVGLTNIVPFLLEDMLKENAATYSKGDDWAPYIVVDGKLITGQNPASSEGAAKAVVQALQES 227          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig126.1608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBT2_ECTSI9.330e-15099.12DJ-1_PfpI domain-containing protein n=2 Tax=Ectoca... [more]
A0A6U0IZP5_9STRA3.300e-6753.10Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A830H344_9CHLO2.990e-6351.32DJ-1_PfpI domain-containing protein n=1 Tax=Pycnoc... [more]
UPI00146C43736.460e-6350.45type 1 glutamine amidotransferase domain-containin... [more]
A0A7S4I150_9STRA1.360e-6250.45Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A2G1MGR6_9RHOB3.790e-6249.12Type 1 glutamine amidotransferase domain-containin... [more]
A0A2S0IP02_9GAMM7.750e-6249.33Type 1 glutamine amidotransferase domain-containin... [more]
A0A259L1Q6_9GAMM1.020e-6150.67Type 1 glutamine amidotransferase domain-containin... [more]
A0A8J3KFY5_9ACTN1.120e-6149.11Dimethylallyltransferase n=4 Tax=Catellatospora Ta... [more]
UPI00126598621.480e-6149.56type 1 glutamine amidotransferase domain-containin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig126contigE-siliculosus-1a_F_contig126:73556..77976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size684
Model size1531
Exons4
Ec32 orthologEc-27_002800.1
Ec32 ortholog descriptionThiJ/PfpI
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2RZ3Y@2759,COG0693@1
EggNOG free text desc.glyoxalase III activity
Seed eggNOG ortholog2880.D8LBT2
Seed ortholog evalue6.2e-120
Seed ortholog score436.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig126.1608.1prot_E-siliculosus-1a_F_contig126.1608.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig126 73622..77195 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927782.2241282-UTR-E-siliculosus-1a_F_contig126:73555..736211622927782.2241282-UTR-E-siliculosus-1a_F_contig126:73555..73621Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig126 73556..73621 +
1696318677.8586795-UTR-E-siliculosus-1a_F_contig126:73555..736211696318677.8586795-UTR-E-siliculosus-1a_F_contig126:73555..73621Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig126 73556..73621 +
1622927782.32192-UTR-E-siliculosus-1a_F_contig126:77195..779761622927782.32192-UTR-E-siliculosus-1a_F_contig126:77195..77976Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig126 77196..77976 +
1696318677.920665-UTR-E-siliculosus-1a_F_contig126:77195..779761696318677.920665-UTR-E-siliculosus-1a_F_contig126:77195..77976Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig126 77196..77976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927782.2355223-CDS-E-siliculosus-1a_F_contig126:73621..736791622927782.2355223-CDS-E-siliculosus-1a_F_contig126:73621..73679Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 73622..73679 +
1696318677.8784928-CDS-E-siliculosus-1a_F_contig126:73621..736791696318677.8784928-CDS-E-siliculosus-1a_F_contig126:73621..73679Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 73622..73679 +
1622927782.24649-CDS-E-siliculosus-1a_F_contig126:75484..755971622927782.24649-CDS-E-siliculosus-1a_F_contig126:75484..75597Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 75485..75597 +
1696318677.889476-CDS-E-siliculosus-1a_F_contig126:75484..755971696318677.889476-CDS-E-siliculosus-1a_F_contig126:75484..75597Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 75485..75597 +
1622927782.2610285-CDS-E-siliculosus-1a_F_contig126:76329..766531622927782.2610285-CDS-E-siliculosus-1a_F_contig126:76329..76653Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 76330..76653 +
1696318677.898562-CDS-E-siliculosus-1a_F_contig126:76329..766531696318677.898562-CDS-E-siliculosus-1a_F_contig126:76329..76653Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 76330..76653 +
1622927782.2746196-CDS-E-siliculosus-1a_F_contig126:77006..771951622927782.2746196-CDS-E-siliculosus-1a_F_contig126:77006..77195Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 77007..77195 +
1696318677.907075-CDS-E-siliculosus-1a_F_contig126:77006..771951696318677.907075-CDS-E-siliculosus-1a_F_contig126:77006..77195Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 77007..77195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig126.1608.1

>prot_E-siliculosus-1a_F_contig126.1608.1 ID=prot_E-siliculosus-1a_F_contig126.1608.1|Name=mRNA_E-siliculosus-1a_F_contig126.1608.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=228bp
MPKILLVLTSSKMMGEKETGFWLEEAAAPHAIFTDAGYEVDIASPEGGAP
PVDAGSKADAYLTDYTRRFDADAAAQAKLAATTKLSDVDSSAYAAVFFAG
GHGTCVDFPNNPSVQGVMEKVYGAGGVISAVCHGPTAFVGAKTAAGAALV
SGKKMTGFTDTEEAQVGLTDKVPFLLEAKLIELGADFSKVDPWTPYAVVD
GRVVTGQNPMSSELTAQKVVEVLKASA*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig126:73556..77976+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig126.1608.1 ID=mRNA_E-siliculosus-1a_F_contig126.1608.1|Name=mRNA_E-siliculosus-1a_F_contig126.1608.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4421bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig126:73556..77976+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCGCGCAAGCTCTCACTCAACCACGACAGCACCACCCCCATACCTATAT ACCACCGCGAATAACCATGCCGAAGATTTTGCTGGTCTTGACCTCTTCCA AGATGATGGGCGAGAAGGAAACAGGTGTGCATGGAGCGCAGATTTGTATG TACCTGGTGAACAGCTGCTTTGGATTTGATGTGAACGGACATAAGGCGGG CGGGTCGTTTTCTCTTCTTTCACCCGGTACCCAAAAAGCCAGAACTGAGA TATCTATAGCGGTTTGAGCGCAGCCGGTGTTCGTAGAGAATTCTGTCTGC ACGGACGCGATAACAGCTTCCCTGCACACGAACCGCTTACAGTACGTGCA TCGAACCGCATCGTGTTCGGGTTGTGCAGCAGTAGCAGCAGCAGCAGCAA GAGAACGAGCCGTGATGATACTCGTGAAGTAGATTTCGTCATAAGCTAAC ATAGCAGCAGCAGCCATGCAGCAACAAACATGCGTCGAAGATTCAACGTT GAGACTTTTGTGTAAGATCTGGCCATCCTTGGGAGCCATCCTCTGGGGTT GTGGTGGCGTTACACCAAGACGCGTTTTTGTGTGTCCTACAATGTACAAC CCCCAAACTTTTTTCAATTGATTTGTCTCATTTCGTGTAGCAGCAAGCCG GAGATAGATCCATCGGGCAGGCGCTGACTGGTCTAGACTATTTGAGTACG TACGTTACGACGAAGAGCAATACAGACAGTAAATACAGCAGTGACCACGG TATAATGCCGGTGAAATCTGGAACAGCTAGCTAGAATATTCAACTTGTTT CATACTCTGAATCCTGAATAATGCCGGTTGCCCGCTAAGACTAATGCCGG TGAAATCGGCTGGATCGCACCGGCATCATGTATATGCATGCCAGGACCAA GTACACTATGTAGTGTGCATACAGGGAATCGTCCTCGCACAGACGTTGGG AGATTGTAGGTGATATCCACAACCATTAGTCCATCAACGACCAGCCAGAC GATCCGCACGGTCCCATCTTCTATCGTCGCTTGAACTCCAGTATGCACCG CGTGGCCTAGATCAGGATGCTTTGAATTTCTCGTGCGTATTGTACAATAC ACGTTTTTTTACAACATTTTGTCGCCGAGAGATTCCAGCTTGCAACAGAT GCGGCGCACTCACTGAATCTCTCTACCGGTGGCGTCGAATTGAGCGGTAG ACAATATCGCAAGCGATCCATATCGGCTGTGCAGATCCCGCATGTGAAAG GTGCGGTCCACGTTGCGCTTCTTTCTGTATCAAGCGCGACAAACGCAATT TCGTCCGTCACCAAACCCCTCGCTTCCGATCGGAGCCTTTCTGCCCCCGG AGGGGGTCAGCCCGTGACGCTGCTACAATTGCGTGTTTCCCTGGGAAACT GGCATCGCTTGTAAGCTAGAGTCAGGCGAGCGTAGCGGCAGTTGGCCGTT CTATTTTTCTTAGCGTGTTTACCAAATCGGCCGTGTGTCGCGATTTTCTC ACCCAGAAAGCACCATCTCCTGAACTCCTGAAGTTTCTGGGGCAGTTACA ACAATGACCCAAGATTATGATGGAACGCTGGAGATTGTTATGGCACGCCG CGCATCCTTTCCGGATATATGGTTGGTGGTGTGCGAGAACGTCATTGAAC TCGATTTGTGGTTTTTAGCCGCAACTTTGGCGCATCAAACAACAACCGAC CTTGCTGTGCAGCTATAGAATGACGGTAGCCGCTGTATGCTGCAGCTGTC GTTGGTGGCAAAGTAGGCTAGGTTAGATGAACAGACGCAAGAGACACCCA GGGTACCTTCGTACGGCAGCTACAACTCAATGACGTCTATATATTTCGCG GTGTAGGAGGGATGTTTCGTTGTACACACGCGCTCATTCTGGTAGTCGCT GCTTCTGCCTGCGTACACGTCGGTCGCAGGGTTTTGGCTGGAAGAGGCCG CGGCCCCGCACGCGATCTTCACCGACGCTGGCTACGAAGTTGACATCGCT TCTCCCGAGGGCGGCGCCCCTCCCGTCGACGCGGGGTCCAAGGTATGATT CAACAAGGGAGCTAAGCGAAAAAAGGTGCTTGCCACGAAGAAAGAAATGC AGACTCTTCCTCGGCCACTCCACGGTCTGGACTTTCGTACACATTAGCAC CCATTACAACCATGGGACCCAGTGCTTCCAGGGTTATCTCTTGACAGTCG GAATCGCGCTGAATTGACAGTGACCCGGTCTGGACTTTCGTACACATTAG CACCCATTACAACCATGGGACCCAGTGCTTCCAGGGTTATCTCTTGACAG TCGGAATCGCGCTGAATTGACAGTGACCCGGTCGGTGTTCCGGCAAGCCG TTCAGGAAAGGGGCTCGATAGACGAGAATGTGTTGTGACGGGGACGCAAG TTTGTGTCTGCAGTGTTGTCGTGCAGGAGGGGTGCGGCCAACAGGTCGAC TCCGGTTTGGTCCTCCATGAAACAAGTTATGGTGGTGACCACGATAAATT AGCTGAGACAACACTGTCGGAGATAGCTCATCGTGGAGATGTGCGGCAGC TCCGCCGAGACCTAAGTTGCTGCTCTATTGTGTTCGGGGACAGAGCCGCC GTCATCGTGACTCTTGTCCAAGACAAGTACACGACACCACCATACTGGCG CTCTCCGTCCAATTTCTCCAGACAGCGAGCGAAACACTCTGGAGCCGCCA GCTGTTCTCGTTTCACACCCGCACCTTTTTTTGTCGATCGATACCACCTC CCCATCAATACATTTACGGGACAGGCGGACGCCTACCTGACAGACTACAC GCGTCGGTTCGATGCGGACGCGGCGGCTCAGGCCAAGCTGGCGGCCACGA CGAAGCTTTCGGACGTGGACTCGTCCGCCTACGCGGCGGTGTTTTTCGCC GGCGGGCACGGGACGTGCGTGGACTTCCCCAACAACCCATCAGTGCAGGG GGTGATGGAGAAGGTGTACGGGGCGGGAGGGGTGATATCGGCCGTGTGCC ACGGGCCGACAGCGTTCGTTGGGGCCAAAACCGCCGCTGGGGCAGCCCTT GTGTCTGGGAAAAAAATGACGGGCTTCACGGACACGGAGGAGGCACAGGT GTGTGGAAGAAATTTGAATGCATGCATGCAGGGATGTTTCGGGGATCGGC ATGTGTTGTGCCGATCTCGGGCGGAGTTTCAGCTGGCAGCACGGCGATGG ATGGTGTTGGCGTTTGCTGTTTCACCCTGTTTTGTACCGTAGATTTCGCG TGAATCTATGATTAACACTTGTCACGGTGCGTTGTATGCTGGTGTATGTG GTTATTGCATCGTCGTGTGCTGTATTGCAGTTGGTCAAGATGTGTTTCGT GTTGGCATGTTAAATCCACGTCATCGTTCTCTTCTTCGGTATTCATTCAC GACGTGCCTCAACACCGTGGTACATGCGCTTGTACGTGCCTCACCCCGCA GGTGGGACTTACCGACAAGGTTCCTTTCCTGCTGGAGGCCAAGCTGATTG AGCTTGGCGCGGACTTTAGCAAGGTGGACCCTTGGACCCCCTACGCGGTC GTCGATGGCCGCGTTGTGACGGGGCAGAACCCCATGTCTTCTGAACTGAC GGCGCAGAAGGTTGTGGAGGTGCTCAAAGCTTCTGCCTAGAGAACGACTC GTCAGGACCTGAAGCGAACCCTAGGCACGGCATCGTCACGCTATGCCAGC TTCTGACGGGCATGCATACATACTCGTCCGAGTAGATCCTGTGTTCTTGT TATGACCCTTCAAGTGGTAATTTCTGTTTCACGATACCTTTTGAGTGCAG GGTGGCTGTAGGCCCCGGTGGCGTAGAGCTGACTCCATACTTTTTTTTTT TTTTTCGCGATGCCGTGACAAAGATCGCCCATTTACGGGGTGAAGGTTAC CCTTTTGCTAAGGCTCGATTCCTCCAGGTGGACCGAGGACGAGGGGTAGG TATGGCACGCATGCAGGCTCGTCCCCAAGGATTGAAGGCATCCTCGAAAC CTTGGGATGGTGAAGGCCGTCAGTGGAAATATCGCGTGGCACTGCTGTAT TGAGAGCGCTTGTTTTGTGAGGCCAAGAAAGTTGACTTTATTGTACACGT TGGAAAGTTGAACCTTCTTGCAACAATGTTGAAGGCATAAGACTGTATAC AGATTTGTAAATGTTGGTTCGTTGAGGTTCGCTGGGTTCTTCAAGTAAAA AACTGTGTGAGTGGTTGAGCTTGGGAAACGTCGCAACCAACTGGCTTCTG GCAGCCAGCTGCGGGCTGGTCCTGCTGCCTGCTTGCGGTGCCATCTTGCA TCACCCCTTGATGGCACTATGACCTCGTGAGCCTACTTTGAAGGGATCGC TCGTAGTAACAGCAGAGGAATTCGGTTTGTGATCCCAGATTCACTCCTCA GTAGAGGCAAACAACGCCCCG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig126:73556..77976+

>mRNA_E-siliculosus-1a_F_contig126.1608.1 ID=mRNA_E-siliculosus-1a_F_contig126.1608.1|Name=mRNA_E-siliculosus-1a_F_contig126.1608.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1368bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig126:73556..77976+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGAAGATTTTGCTGGTCTTGACCTCTTCCAAGATGATGGGCGAGAA
GGAAACAGATGCCGAAGATTTTGCTGGTCTTGACCTCTTCCAAGATGATG
GGCGAGAAGGAAACAGGGTTTTGGCTGGAAGAGGCCGCGGCCCCGCACGC
GATCTTCACCGACGCTGGCTACGAAGTTGACATCGCTTCTCCCGAGGGCG
GCGCCCCTCCCGTCGACGCGGGGTCCAAGGGTTTTGGCTGGAAGAGGCCG
CGGCCCCGCACGCGATCTTCACCGACGCTGGCTACGAAGTTGACATCGCT
TCTCCCGAGGGCGGCGCCCCTCCCGTCGACGCGGGGTCCAAGGCGGACGC
CTACCTGACAGACTACACGCGTCGGTTCGATGCGGACGCGGCGGCTCAGG
CCAAGCTGGCGGCCACGACGAAGCTTTCGGACGTGGACTCGTCCGCCTAC
GCGGCGGTGTTTTTCGCCGGCGGGCACGGGACGTGCGTGGACTTCCCCAA
CAACCCATCAGTGCAGGGGGTGATGGAGAAGGTGTACGGGGCGGGAGGGG
TGATATCGGCCGTGTGCCACGGGCCGACAGCGTTCGTTGGGGCCAAAACC
GCCGCTGGGGCAGCCCTTGTGTCTGGGAAAAAAATGACGGGCTTCACGGA
CACGGAGGAGGCACAGGCGGACGCCTACCTGACAGACTACACGCGTCGGT
TCGATGCGGACGCGGCGGCTCAGGCCAAGCTGGCGGCCACGACGAAGCTT
TCGGACGTGGACTCGTCCGCCTACGCGGCGGTGTTTTTCGCCGGCGGGCA
CGGGACGTGCGTGGACTTCCCCAACAACCCATCAGTGCAGGGGGTGATGG
AGAAGGTGTACGGGGCGGGAGGGGTGATATCGGCCGTGTGCCACGGGCCG
ACAGCGTTCGTTGGGGCCAAAACCGCCGCTGGGGCAGCCCTTGTGTCTGG
GAAAAAAATGACGGGCTTCACGGACACGGAGGAGGCACAGGTGGGACTTA
CCGACAAGGTTCCTTTCCTGCTGGAGGCCAAGCTGATTGAGCTTGGCGCG
GACTTTAGCAAGGTGGACCCTTGGACCCCCTACGCGGTCGTCGATGGCCG
CGTTGTGACGGGGCAGAACCCCATGTCTTCTGAACTGACGGCGCAGAAGG
TTGTGGAGGTGCTCAAAGCTTCTGCCTAGGTGGGACTTACCGACAAGGTT
CCTTTCCTGCTGGAGGCCAAGCTGATTGAGCTTGGCGCGGACTTTAGCAA
GGTGGACCCTTGGACCCCCTACGCGGTCGTCGATGGCCGCGTTGTGACGG
GGCAGAACCCCATGTCTTCTGAACTGACGGCGCAGAAGGTTGTGGAGGTG
CTCAAAGCTTCTGCCTAG
back to top