mRNA_E-siliculosus-1a_F_contig126.1606.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig126.1606.1
Unique NamemRNA_E-siliculosus-1a_F_contig126.1606.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig126.1606.1 vs. uniprot
Match: A0A6H5L3P5_9PHAE (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3P5_9PHAE)

HSP 1 Score: 548 bits (1412), Expect = 5.980e-185
Identity = 412/505 (81.58%), Postives = 415/505 (82.18%), Query Frame = 1 
Query:  151 MSEQALRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNPQPARQRKPEESTGSRSSRKDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPXXXXXXXXXXXXTRAVPRLQKAGTGAVKAASAAAA-PVAVPAPAVDLLDFSEPAPPQAPPKXXXXXXXXXXXXXXXXXDQMFEFSDFQSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQQPAAQSAXXXXXXXXXAGAPGKASAASILSMFNSPAGGGVAGRSMAGPVGSSPVAGVMKTPELNQVSQMMSTLNVGGLAPMGSQQMGMPGAGGWAQQHXXXXXXXXXXXXXXXXXXXXLQXXXXXXXXXXXXXXXXXXXXXXXXNTQGGLNAGASGGAMFGVGQAGGHQQHPQGMGAATNGSGLTGLRGEGDGAAQGNGATVVMP 1662
            M+EQALRKRLE LVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQV+GMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSR+PQPARQRKPEESTGSRSSR DSG        XXXXXXXXXXXXXXXXXXXX APXXXXXXXXXX  TRAVPRLQKAGTGAVKAASAAAA P AVPAPAVDLLDFSEP PPQAP  XXXXXXXXXXXXXXXX DQMFEFSDFQSAP                             VQQP  QS XXXXXXXX AGAPGKASAASILSMFNSPAGGG  GRSMAGPVGSSPV GVMKTPELNQVSQMMSTLNVGGLAPMGSQQMGMPGAGGW QQ XXXXXXXXXXXXX        Q    XXXXXXXXXXXXXX             AGASGGA  GVGQAGG QQHPQGM AA NGSGLTGLRG GDGA QGN ATVVMP
Sbjct:    1 MTEQALRKRLEALVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVQGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRSPQPARQRKPEESTGSRSSRMDSGAASSKSPTXXXXXXXXXXXXXXXXXXXXXAPXXXXXXXXXXTTTRAVPRLQKAGTGAVKAASAAAAAPSAVPAPAVDLLDFSEPVPPQAPXXXXXXXXXXXXXXXXXXMDQMFEFSDFQSAPSSSPGATVPAAAALVGSQQQQQPAT----VQQPXXQS-XXXXXXXXAAGAPGKASAASILSMFNSPAGGGAVGRSMAGPVGSSPVTGVMKTPELNQVSQMMSTLNVGGLAPMGSQQMGMPGAGGWTQQQXXXXXXXXXXXXXWAQQQKLQQLLQQXXXXXXXXXXXXXXLQQKIHG-----GAGASGGAKSGVGQAGGDQQHPQGMDAAPNGSGLTGLRGGGDGATQGNXATVVMP 495
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BLAST of mRNA_E-siliculosus-1a_F_contig126.1606.1 vs. uniprot
Match: D8LBT0_ECTSI (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT0_ECTSI)

HSP 1 Score: 474 bits (1221), Expect = 4.710e-158
Identity = 345/393 (87.79%), Postives = 346/393 (88.04%), Query Frame = 1 
Query:  151 MSEQALRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNPQPARQRKPEESTGSRSSRKDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPXXXXXXXXXXXXTRAVPRLQKAGTGAVKAASAAAAPVAVP-----APAVDLLDFSEPAPPQAPPKXXXXXXXXXXXXXXXXXDQMFEFSDFQSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQQPAAQSAXXXXXXXXXAGAPGKASAASILSMFNSPAGGGVAGRSMAGPVGSSPVAGVMKTPELNQVSQMMSTLNVGGLAPMGSQQMGMP 1314
            MSEQALRKRLE LVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNPQPARQRKPEESTGSRSSRKDSG XXXXXXXXXXXXXXXXXXXXXXXXXXX APXXXXXXXXXXX TRAVPRLQKAGTGAVKAAS              APAVDLLDFSEPAPPQAP  XXXXXXXXXXXXXXXX DQMFEFSDFQSAP         XXXXX               VQQPA+QS XXXXXXXXX GAPGKASAASILSMFNSPAGGGVAGRSMAGPVGSSPVAGVMKTPELNQVSQMMSTLNVGGLAPMGSQQMGMP
Sbjct:    1 MSEQALRKRLEALVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNPQPARQRKPEESTGSRSSRKDSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPXXXXXXXXXXXTTRAVPRLQKAGTGAVKAASTXXXXXXXXXXXXXAPAVDLLDFSEPAPPQAPXXXXXXXXXXXXXXXXXXADQMFEFSDFQSAPSSSSGATVPXXXXXVGSQQQPAA------VQQPASQSGXXXXXXXXXXGAPGKASAASILSMFNSPAGGGVAGRSMAGPVGSSPVAGVMKTPELNQVSQMMSTLNVGGLAPMGSQQMGMP 387
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BLAST of mRNA_E-siliculosus-1a_F_contig126.1606.1 vs. uniprot
Match: A0A836C8F7_9STRA (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8F7_9STRA)

HSP 1 Score: 181 bits (459), Expect = 5.970e-50
Identity = 87/125 (69.60%), Postives = 100/125 (80.00%), Query Frame = 1 
Query:  151 MSEQALRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNP 525
            M+    +KRLE LVK  +NRFCADCG REPRWASVNLGLFICL CSGIHRNLGVHISFVRSVNLDTWK  QV  ME +GN RAKA++EA VP    VP E ++VRE +KWIR KYEH+R+++R P
Sbjct:    1 MTSPQDKKRLEALVKREDNRFCADCGCREPRWASVNLGLFICLGCSGIHRNLGVHISFVRSVNLDTWKTEQVDKMERIGNARAKAYYEANVPPGTPVPTESSSVRELDKWIRSKYEHKRYIARGP 125
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BLAST of mRNA_E-siliculosus-1a_F_contig126.1606.1 vs. uniprot
Match: A0A7S3UXM8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXM8_HETAK)

HSP 1 Score: 178 bits (451), Expect = 1.910e-48
Identity = 82/128 (64.06%), Postives = 101/128 (78.91%), Query Frame = 1 
Query:  154 SEQALRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNPQPAR 537
            SE+  ++RL  L K  EN+FC DCG REPRWAS  LG+F+C+ CSGIHRNLGVHISFVRSVNLD+W+   V+ ME  GN RA+A+FEAEVP++Y +P E +T RE EKWIRDKYEHRRF++R P P +
Sbjct:   15 SEEDHKRRLTALTKKDENKFCIDCGAREPRWASATLGVFMCIRCSGIHRNLGVHISFVRSVNLDSWREDHVQRMERWGNGRARAYFEAEVPSNYPIPGERSTTREVEKWIRDKYEHRRFLAREPPPGK 142
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BLAST of mRNA_E-siliculosus-1a_F_contig126.1606.1 vs. uniprot
Match: A0A7S2UT74_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT74_9STRA)

HSP 1 Score: 176 bits (445), Expect = 2.140e-44
Identity = 81/124 (65.32%), Postives = 99/124 (79.84%), Query Frame = 1 
Query:  154 SEQALRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNP 525
            S Q  + RLE +VK+G+N+FCADCG REPRWAS  LG+FIC+ CSGIHRNLGVHISFVRSVNLDTWK   V+ ME  GN RA  +FEA+VP +Y +P E ++ RE E+WIRDKYE+R+F +RNP
Sbjct:   15 SHQDHKVRLEAMVKSGDNKFCADCGAREPRWASATLGVFICIRCSGIHRNLGVHISFVRSVNLDTWKEDHVRKMEAWGNARAAEYFEADVPPNYRIPDEKSSTRELERWIRDKYEYRKFAARNP 138
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BLAST of mRNA_E-siliculosus-1a_F_contig126.1606.1 vs. uniprot
Match: G5A4X3_PHYSP (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A4X3_PHYSP)

HSP 1 Score: 166 bits (421), Expect = 2.990e-44
Identity = 75/120 (62.50%), Postives = 96/120 (80.00%), Query Frame = 1 
Query:  166 LRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNP 525
            L+K+L  L+K  EN+FCADCG R PRWAS+NLG+FIC+ CSGIHR+LGVH++FVRSVNLD+W   QV+ M+  GN RAKA++EA VP  Y +P EH++VRE+E WIR+KYE +RFV   P
Sbjct:   16 LKKQLNELMKLEENKFCADCGCRGPRWASINLGVFICIACSGIHRSLGVHLTFVRSVNLDSWTSEQVQQMQRWGNARAKAYYEANVPRDYRIPTEHSSVREKEMWIREKYERKRFVGEAP 135
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BLAST of mRNA_E-siliculosus-1a_F_contig126.1606.1 vs. uniprot
Match: A0A3F2RQV0_9STRA (Arf-GAP domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RQV0_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.500e-43
Identity = 77/120 (64.17%), Postives = 98/120 (81.67%), Query Frame = 1 
Query:  166 LRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNP 525
            L+K+L  L+K  EN+FCADCG R PRWAS+NLG+FIC+ CSGIHR+LGVH++FVRSVNLD+W P QV+ M+  GN RAKA++EA VP  Y +P EHA+VRE+E WIR+KYE +RFV + P
Sbjct:   15 LKKKLNELMKLEENKFCADCGCRGPRWASINLGVFICIACSGIHRSLGVHLTFVRSVNLDSWTPEQVQQMQRWGNGRAKAYYEATVPRDYRIPTEHASVREKEMWIREKYERKRFVGQEP 134
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BLAST of mRNA_E-siliculosus-1a_F_contig126.1606.1 vs. uniprot
Match: M4C531_HYAAE (Arf-GAP domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C531_HYAAE)

HSP 1 Score: 169 bits (429), Expect = 1.270e-42
Identity = 76/116 (65.52%), Postives = 96/116 (82.76%), Query Frame = 1 
Query:  166 LRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFV 513
            L+K+L  L+K  EN+FCADCG R PRWAS+NLG+FIC+ CSGIHR+LGVH++FVRSVNLD+W   QV+ M+  GN RAKAHFEA +P+ Y VP EH++VR++E WIRDKYE +RFV
Sbjct:   17 LKKQLNELMKREENKFCADCGSRGPRWASINLGVFICIACSGIHRSLGVHVTFVRSVNLDSWTTEQVQQMQRWGNARAKAHFEAALPSDYFVPSEHSSVRDKELWIRDKYERKRFV 132
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BLAST of mRNA_E-siliculosus-1a_F_contig126.1606.1 vs. uniprot
Match: A0A225WQC6_9STRA (Arf-GAP domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WQC6_9STRA)

HSP 1 Score: 168 bits (426), Expect = 2.180e-42
Identity = 78/135 (57.78%), Postives = 101/135 (74.81%), Query Frame = 1 
Query:  136 RGIAVMSEQALRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNPQPARQ 540
            R  A   +  L+K+L  L+K  EN+FCADCG R PRWAS+NLG+FIC+ CSGIHR+LGVH++FVRSVNLD+W P QV  M+  GN +AK ++EA VP  Y VP EH++VRE+E WIR+KYE +RFV   P+  R+
Sbjct:    3 RSKAPDDQTKLKKQLNELMKLEENKFCADCGCRGPRWASINLGVFICIACSGIHRSLGVHLTFVRSVNLDSWTPEQVAQMQRWGNAKAKGYYEANVPRDYRVPTEHSSVREKEMWIREKYERKRFVGEAPREERE 137
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BLAST of mRNA_E-siliculosus-1a_F_contig126.1606.1 vs. uniprot
Match: A0A2D4C9N7_PYTIN (Arf-GAP domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9N7_PYTIN)

HSP 1 Score: 170 bits (431), Expect = 2.720e-42
Identity = 83/142 (58.45%), Postives = 105/142 (73.94%), Query Frame = 1 
Query:  166 LRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNPQPARQR-KPEESTGSRSSRKDS 588
            L+K L+ L K  EN+FCADCG R PRWAS+NLG+FIC+ CSGIHR+LGVH++FVRSVNLD W   QV  M++ GN RAKA++EA VP  Y +P EH++VRE+E WIRDKYE +RF +RN  P+ Q  + +   G RS R  S
Sbjct:   17 LKKILDELTKREENKFCADCGCRGPRWASINLGVFICIACSGIHRSLGVHLTFVRSVNLDAWTAEQVAQMQKWGNARAKAYYEAHVPRDYRIPNEHSSVREKEMWIRDKYERKRFAARNEPPSGQDDRDDHDDGERSRRTGS 158
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig126.1606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3P5_9PHAE5.980e-18581.58Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
D8LBT0_ECTSI4.710e-15887.79Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836C8F7_9STRA5.970e-5069.60Arf-GAP domain-containing protein (Fragment) n=1 T... [more]
A0A7S3UXM8_HETAK1.910e-4864.06Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2UT74_9STRA2.140e-4465.32Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
G5A4X3_PHYSP2.990e-4462.50Arf-GAP domain-containing protein (Fragment) n=1 T... [more]
A0A3F2RQV0_9STRA1.500e-4364.17Arf-GAP domain-containing protein n=1 Tax=Phytopht... [more]
M4C531_HYAAE1.270e-4265.52Arf-GAP domain-containing protein n=1 Tax=Hyaloper... [more]
A0A225WQC6_9STRA2.180e-4257.78Arf-GAP domain-containing protein n=1 Tax=Phytopht... [more]
A0A2D4C9N7_PYTIN2.720e-4258.45Arf-GAP domain-containing protein n=1 Tax=Pythium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig126contigE-siliculosus-1a_F_contig126:63039..67181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1563
Model size2451
Exons7
Ec32 orthologEc-27_002820.1
Ec32 ortholog descriptionArf GTPase activating protein
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EggNOG OGsCOG5347@1,KOG0703@2759
EggNOG free text desc.GTPase activator activity
GOsGO:0000003,GO:0001558,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0007275,GO:0008150,GO:0009791,GO:0009838,GO:0009908,GO:0009987,GO:0010227,GO:0012505,GO:0016043,GO:0016192,GO:0022414,GO:0022607,GO:0030135,GO:0030136,GO:0030276,GO:0030308,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0034622,GO:0035459,GO:0035652,GO:0040008,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0043933,GO:0044085,GO:0044093,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045926,GO:0048367,GO:0048437,GO:0048519,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0060858,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0071840,GO:0090567,GO:0090630,GO:0097708,GO:0098791,GO:0099402
KEGG Pathwayko04144,map04144
KEGG koko:K12486
Preferred nameAGD15
Seed eggNOG ortholog2880.D8LBT0
Seed ortholog evalue1.9e-132
Seed ortholog score479.6
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927781.902265-UTR-E-siliculosus-1a_F_contig126:63038..631351622927781.902265-UTR-E-siliculosus-1a_F_contig126:63038..63135Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig126 63039..63135 +
1696318677.6418183-UTR-E-siliculosus-1a_F_contig126:63038..631351696318677.6418183-UTR-E-siliculosus-1a_F_contig126:63038..63135Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig126 63039..63135 +
1622927781.9156792-UTR-E-siliculosus-1a_F_contig126:63360..634131622927781.9156792-UTR-E-siliculosus-1a_F_contig126:63360..63413Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig126 63361..63413 +
1696318677.65477-UTR-E-siliculosus-1a_F_contig126:63360..634131696318677.65477-UTR-E-siliculosus-1a_F_contig126:63360..63413Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig126 63361..63413 +
1622927782.0485704-UTR-E-siliculosus-1a_F_contig126:66443..671811622927782.0485704-UTR-E-siliculosus-1a_F_contig126:66443..67181Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig126 66444..67181 +
1696318677.7398794-UTR-E-siliculosus-1a_F_contig126:66443..671811696318677.7398794-UTR-E-siliculosus-1a_F_contig126:66443..67181Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig126 66444..67181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927781.929458-CDS-E-siliculosus-1a_F_contig126:63413..634981622927781.929458-CDS-E-siliculosus-1a_F_contig126:63413..63498Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 63414..63498 +
1696318677.6644163-CDS-E-siliculosus-1a_F_contig126:63413..634981696318677.6644163-CDS-E-siliculosus-1a_F_contig126:63413..63498Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 63414..63498 +
1622927781.9415567-CDS-E-siliculosus-1a_F_contig126:63961..640951622927781.9415567-CDS-E-siliculosus-1a_F_contig126:63961..64095Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 63962..64095 +
1696318677.6735902-CDS-E-siliculosus-1a_F_contig126:63961..640951696318677.6735902-CDS-E-siliculosus-1a_F_contig126:63961..64095Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 63962..64095 +
1622927781.960248-CDS-E-siliculosus-1a_F_contig126:64371..645801622927781.960248-CDS-E-siliculosus-1a_F_contig126:64371..64580Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 64372..64580 +
1696318677.6912458-CDS-E-siliculosus-1a_F_contig126:64371..645801696318677.6912458-CDS-E-siliculosus-1a_F_contig126:64371..64580Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 64372..64580 +
1622927781.9724574-CDS-E-siliculosus-1a_F_contig126:64884..654191622927781.9724574-CDS-E-siliculosus-1a_F_contig126:64884..65419Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 64885..65419 +
1696318677.703173-CDS-E-siliculosus-1a_F_contig126:64884..654191696318677.703173-CDS-E-siliculosus-1a_F_contig126:64884..65419Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 64885..65419 +
1622927781.9919972-CDS-E-siliculosus-1a_F_contig126:65641..658421622927781.9919972-CDS-E-siliculosus-1a_F_contig126:65641..65842Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 65642..65842 +
1696318677.7121303-CDS-E-siliculosus-1a_F_contig126:65641..658421696318677.7121303-CDS-E-siliculosus-1a_F_contig126:65641..65842Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 65642..65842 +
1622927782.0081367-CDS-E-siliculosus-1a_F_contig126:66044..664431622927782.0081367-CDS-E-siliculosus-1a_F_contig126:66044..66443Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 66045..66443 +
1696318677.7216039-CDS-E-siliculosus-1a_F_contig126:66044..664431696318677.7216039-CDS-E-siliculosus-1a_F_contig126:66044..66443Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 66045..66443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig126.1606.1prot_E-siliculosus-1a_F_contig126.1606.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig126 63414..66443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig126.1606.1

>prot_E-siliculosus-1a_F_contig126.1606.1 ID=prot_E-siliculosus-1a_F_contig126.1606.1|Name=mRNA_E-siliculosus-1a_F_contig126.1606.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=521bp
MSEQALRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHR
NLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPRE
HATVREREKWIRDKYEHRRFVSRNPQPARQRKPEESTGSRSSRKDSGAAS
SKSPTGKTGSSSSSRAAGRTSSSTSTAPSPAASKATSSTTTRAVPRLQKA
GTGAVKAASAAAAPVAVPAPAVDLLDFSEPAPPQAPPKASPPPSRATSAP
PPPPADQMFEFSDFQSAPSSSSSSGATVPSAAASVGSQQQQQQQPAAVQQ
PAAQSAQQGQQEQPAAGAPGKASAASILSMFNSPAGGGVAGRSMAGPVGS
SPVAGVMKTPELNQVSQMMSTLNVGGLAPMGSQQMGMPGAGGWAQQHQPQ
QAQAQAMAWAQQQKLQQLQQQQQLLLQRQQWQMQQQQQQQQQQNTQGGLN
AGASGGAMFGVGQAGGHQQHPQGMGAATNGSGLTGLRGEGDGAAQGNGAT
VVMPGGLGAGASGMGMGGLR*
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mRNA from alignment at E-siliculosus-1a_F_contig126:63039..67181+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig126.1606.1 ID=mRNA_E-siliculosus-1a_F_contig126.1606.1|Name=mRNA_E-siliculosus-1a_F_contig126.1606.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4143bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig126:63039..67181+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAAACCACCGCACTGACCGACCGTCCGTGACCCGTGACCCGCACCTCGAG
CGAGCTGTTGAAGTGGCGAACGGCACTGGGGTCTGACAATCCAGCAGGTG
CGCGAGCTTGTGTGCGCGATTCCCCAATTGTAGGCGGTCGAAGTCGGAGG
TGCAGTAGCGTGCAAGGCAAGACCTTTACAAGTGCTCGCCCCTTTCTTGT
TTTCTATTGAACATTTTCGACGCTGCTGCTACTGCTGCTGTGGCTTCTTT
TCGGCTCCTGCCCCACATCATCGTCAGAACGCATAAAGCACCCTTGGCTG
TTCCTCCGCCTACTTCTTGAAGGTTTTGCAAGTCTCAACGGAGACAGAGA
AGAGAACGAGAGAGGTATCGCTGTCATGTCGGAACAGGCGCTCAGGAAGC
GATTGGAGACCTTGGTCAAGACTGGAGAGAACCGCTTCTGCGCCGACTGC
GGCAAGAGAGGTAGTACACACGTGCGGCCTAACCAACAGCAGTTCGTCGT
GATCGGTCTGGTCTGTCTGGCATGGGTGCAGCACAGAACCAGCAACAGCA
CGGAGTACACGATTGTCCCCCTCGGCTCTGAAAGCCATGTCGTTGCTCTC
TCTCCCTCTTTCTCTCCCGCAGCTGCTCTGCACTGCTGTCCGGTTAGTTT
GACAGGCATTCAGCCGCAAATGGTATAGTCTGGCAGCGCATCCCTCCGAT
GAGGTGCACGCTTCAATTGAGGCTCTTGGTATCAGCTAGAACACCGAAGT
ATAAGCCGGGACATCGTCTAGACTTCGGCACACATCCCTCTCACTGCTGT
CGACATGCTACTCGCTCGCTGAGAACACGCTATTGTATGCTACATCAATG
TAATCAATTTGAGAATTATTGCCTGTGAACGCCTTTTGCTCTTCTTCCCC
AACGTCGGGCTGGTTGACACCAGAGCCCCGCTGGGCCTCCGTTAATCTCG
GGCTGTTCATATGCTTGGATTGCTCTGGAATCCACCGCAACTTGGGGGTT
CACATCTCGTTTGTTCGTAGCGTCAACCTGGACACTTGGAAGCCGGCTCA
AGTTAAGGTATGAGCGGGCGGCGTTTGCTCTCTTGGCTTTCGTCCGAATT
GAAGCCTAGCAATTTCAGTGCTGCACTTCCGGCGGGCTCCTTTTCATGAT
CGTGGTGCGTTGGCAAGGACTTCAAGAGAATCATGTACCGAGCCGGTACA
AGGCTTGGCATCAAGCGGGTTGAAAAATCGCGCGTTTCTCACGATGATGT
TGTACCTGAACTACAACACTGCTGTACATTTAACGCGTGATGTGTTCGTC
TACCCATGTTTTTTTTCGTGGTGTTTTTTCCAGGGCATGGAAGAGATGGG
AAACGAGCGCGCCAAGGCTCACTTCGAGGCCGAAGTGCCGGCCAGCTACA
CCGTGCCGCGAGAACACGCCACTGTCCGCGAGCGCGAGAAATGGATCCGT
GACAAGTACGAGCACAGGCGTTTCGTGTCGAGGAATCCTCAGCCTGCTCG
GCAGCGGAAGCCGGAGGAGTCTACCGGCTCACGATCTTCGAGGTGCGAGA
GCAAGACGGAGAGGCAGGGACGAAGTCGTGGATAGAGCAAAAGCAAGCAG
ATCCCGCTGCTGGTAGGGTTTTCGGTCATCCCTCTCGCTTGTCACGAACA
CGGTTATCAGATGCGATTTCCTCGCCAAGGCCCGGCTGTCTTGACCGCCT
GAAACAGCGCGCCAGAACGAGCGCCGAGCATCGACCCGCCCCCGCAACCC
ACGAGCTCCTTCTCCTCCTCGACGCTTGCGCAACCGACACCTTGGTCTCA
CCACGCCTCACCTTGCATTGCCGAACAAAATCCCCAATAAAATCAGGAAG
GACAGCGGCGCAGCCTCCTCCAAGTCCCCCACGGGAAAGACCGGCAGCAG
TAGCAGTAGCCGGGCGGCGGGGCGAACATCGTCCTCGACCTCCACGGCGC
CGTCACCGGCCGCTTCCAAGGCTACATCATCTACCACCACCAGGGCCGTG
CCCCGCCTCCAGAAGGCCGGCACCGGGGCAGTGAAGGCCGCTTCTGCCGC
CGCCGCGCCGGTCGCTGTCCCCGCCCCTGCTGTCGATCTCCTCGACTTCT
CCGAGCCGGCCCCGCCGCAGGCGCCGCCAAAAGCGTCGCCGCCGCCGTCG
AGGGCTACGTCGGCGCCGCCACCGCCGCCGGCGGACCAGATGTTCGAGTT
CTCGGATTTTCAGTCTGCGCCTTCTTCGTCGTCGTCGTCGGGGGCGACGG
TGCCGTCGGCAGCGGCGTCGGTGGGATCCCAGCAGCAGCAGCAGCAGCAG
CCGGCCGCAGTGCAGCAACCGGCGGCGCAGTCTGCACAGCAAGGGCAGCA
GGAGCAACCAGCGGCAGGTGCCCCTGGGAAGGTATGTACGTTTTCGCTCC
GCTTTGTAAACGGCAGCAAAAATTGTTCGATCGCGAAGAGGTTTGGGTGT
TTTGCTGCTGGCCACTGCTGCCGTTTCTGCGGATGGTTTGCTCGTGGTCC
TCTGCCCGATGTTTGTGTTATTTCTGGTTTCATCCATCCATGTCGTCCTC
CTCCCCCCGACCTCGCCTGCCGTCGACGCTCTCTTCGATTTTTGTTCTCG
CAGGCATCCGCGGCGTCGATTTTGTCCATGTTTAACAGCCCCGCGGGCGG
CGGCGTCGCGGGCCGCAGTATGGCGGGGCCTGTTGGTTCATCCCCTGTAG
CAGGGGTTATGAAAACCCCAGAGCTGAACCAAGTGTCGCAGATGATGTCG
ACGCTGAACGTCGGGGGCCTCGCGCCGATGGGCTCCCAGCAGATGGGCAT
GCCGGTGCGTCCTTGCATGTGGCCTGTTTTTGTCGCGCGAGAGCCATTTT
TTTGGCGCCTTTTTGCCGTCCCAAATAGTTGCGCGTTTGTGCAATGCGTC
GCTCCGCAGAATCATCGATGTGCTCTTTCGTGTCACGCGTTGAGAACCCT
CACATACATGTAGCCTCATGCGCCTGCCTGACTGCACGCTTTCGTCTCAT
ACCCAGGGTGCCGGTGGTTGGGCGCAGCAGCACCAGCCCCAGCAAGCGCA
GGCTCAGGCGATGGCGTGGGCCCAGCAACAGAAGCTCCAGCAGCTGCAGC
AACAGCAGCAGCTGCTGCTCCAGCGACAGCAATGGCAAATGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAAAACACCCAGGGGGGGTTGAACGCGGGCGC
TTCTGGGGGGGCTATGTTTGGCGTAGGCCAAGCCGGTGGACACCAGCAAC
ACCCGCAGGGCATGGGCGCGGCCACCAACGGTTCGGGGCTAACTGGGCTG
CGTGGGGAGGGCGATGGGGCTGCTCAAGGAAACGGCGCGACGGTAGTGAT
GCCCGGCGGATTGGGAGCAGGGGCGAGCGGCATGGGGATGGGGGGGCTGC
GGTAACGGAGCCCACTTGCCATCCATCCCTTGGTGTTAGGCGAGTGCGGA
GGTTTGCGGGCGTTGTGACTTTGAGGCCCGAGAGGTAGAGCGATGCGGAA
ACCGGTCAGGACCGTTAATTTATTGTTTCACTTTGTATGCTCTTTGTGTA
GCCTTGTCCCTTGCGTTGCTCGGTTTGACGTTCTTTTGTTTACGCCTGCA
GGAAAGTTGAGCAATTCGCTGCCGGTTCATGAACGTAACCGATCACCGTG
TCGCCTTGGTGCCGACGATTTCGTAGGCCGTGTAAGGACCTTTGTTTTTA
GTATTTTTGAGGCTGTGTAAACTGAAGCCGCCTTTTGGCTGTGAGCGGCG
CCCTCACCATTTCTGCGTATTGTCCCTTTGTCTTGTAGCCGTCGAGTCTT
GCGGTCTGAGCGACGCCAGGCGTCCGGTGTCGTGTGCTACGCGGTTTTGT
GCTACTGCACTTTGTTATATGGCACCTTGGGTTAGCCTTTGGGGGGTTAG
CGATGTTTATTTACAGCTGTGAAGTTGAAAGAAAAGATGACGATGAACTC
ACCTTCGAGTACGATGACGGGCAGCACGAGTTCTATATGGGTCTATTTTT
CGAGATTTCAGTACACGTGCTCTGAGCACGTGCTCAAGTTCGACCGAATC
TCAGCCTGGGACCCCAATGAACAGGACCCTCTTGTTGATGCTGCCAAGGT
CGTCTCTCCGCCGTTGAACCTCTTCCAACCTGGTACCTTGGGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig126:63039..67181+

>mRNA_E-siliculosus-1a_F_contig126.1606.1 ID=mRNA_E-siliculosus-1a_F_contig126.1606.1|Name=mRNA_E-siliculosus-1a_F_contig126.1606.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3126bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig126:63039..67181+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCGGAACAGGCGCTCAGGAAGCGATTGGAGACCTTGGTCAAGACTGG
AGAGAACCGCTTCTGCGCCGACTGCGGCAAGAGAGATGTCGGAACAGGCG
CTCAGGAAGCGATTGGAGACCTTGGTCAAGACTGGAGAGAACCGCTTCTG
CGCCGACTGCGGCAAGAGAGAGCCCCGCTGGGCCTCCGTTAATCTCGGGC
TGTTCATATGCTTGGATTGCTCTGGAATCCACCGCAACTTGGGGGTTCAC
ATCTCGTTTGTTCGTAGCGTCAACCTGGACACTTGGAAGCCGGCTCAAGT
TAAGAGCCCCGCTGGGCCTCCGTTAATCTCGGGCTGTTCATATGCTTGGA
TTGCTCTGGAATCCACCGCAACTTGGGGGTTCACATCTCGTTTGTTCGTA
GCGTCAACCTGGACACTTGGAAGCCGGCTCAAGTTAAGGGCATGGAAGAG
ATGGGAAACGAGCGCGCCAAGGCTCACTTCGAGGCCGAAGTGCCGGCCAG
CTACACCGTGCCGCGAGAACACGCCACTGTCCGCGAGCGCGAGAAATGGA
TCCGTGACAAGTACGAGCACAGGCGTTTCGTGTCGAGGAATCCTCAGCCT
GCTCGGCAGCGGAAGCCGGAGGAGTCTACCGGCTCACGATCTTCGAGGGC
ATGGAAGAGATGGGAAACGAGCGCGCCAAGGCTCACTTCGAGGCCGAAGT
GCCGGCCAGCTACACCGTGCCGCGAGAACACGCCACTGTCCGCGAGCGCG
AGAAATGGATCCGTGACAAGTACGAGCACAGGCGTTTCGTGTCGAGGAAT
CCTCAGCCTGCTCGGCAGCGGAAGCCGGAGGAGTCTACCGGCTCACGATC
TTCGAGGAAGGACAGCGGCGCAGCCTCCTCCAAGTCCCCCACGGGAAAGA
CCGGCAGCAGTAGCAGTAGCCGGGCGGCGGGGCGAACATCGTCCTCGACC
TCCACGGCGCCGTCACCGGCCGCTTCCAAGGCTACATCATCTACCACCAC
CAGGGCCGTGCCCCGCCTCCAGAAGGCCGGCACCGGGGCAGTGAAGGCCG
CTTCTGCCGCCGCCGCGCCGGTCGCTGTCCCCGCCCCTGCTGTCGATCTC
CTCGACTTCTCCGAGCCGGCCCCGCCGCAGGCGCCGCCAAAAGCGTCGCC
GCCGCCGTCGAGGGCTACGTCGGCGCCGCCACCGCCGCCGGCGGACCAGA
TGTTCGAGTTCTCGGATTTTCAGTCTGCGCCTTCTTCGTCGTCGTCGTCG
GGGGCGACGGTGCCGTCGGCAGCGGCGTCGGTGGGATCCCAGCAGCAGCA
GCAGCAGCAGCCGGCCGCAGTGCAGCAACCGGCGGCGCAGTCTGCACAGC
AAGGGCAGCAGGAGCAACCAGCGGCAGGTGCCCCTGGGAAGGAAGGACAG
CGGCGCAGCCTCCTCCAAGTCCCCCACGGGAAAGACCGGCAGCAGTAGCA
GTAGCCGGGCGGCGGGGCGAACATCGTCCTCGACCTCCACGGCGCCGTCA
CCGGCCGCTTCCAAGGCTACATCATCTACCACCACCAGGGCCGTGCCCCG
CCTCCAGAAGGCCGGCACCGGGGCAGTGAAGGCCGCTTCTGCCGCCGCCG
CGCCGGTCGCTGTCCCCGCCCCTGCTGTCGATCTCCTCGACTTCTCCGAG
CCGGCCCCGCCGCAGGCGCCGCCAAAAGCGTCGCCGCCGCCGTCGAGGGC
TACGTCGGCGCCGCCACCGCCGCCGGCGGACCAGATGTTCGAGTTCTCGG
ATTTTCAGTCTGCGCCTTCTTCGTCGTCGTCGTCGGGGGCGACGGTGCCG
TCGGCAGCGGCGTCGGTGGGATCCCAGCAGCAGCAGCAGCAGCAGCCGGC
CGCAGTGCAGCAACCGGCGGCGCAGTCTGCACAGCAAGGGCAGCAGGAGC
AACCAGCGGCAGGTGCCCCTGGGAAGGCATCCGCGGCGTCGATTTTGTCC
ATGTTTAACAGCCCCGCGGGCGGCGGCGTCGCGGGCCGCAGTATGGCGGG
GCCTGTTGGTTCATCCCCTGTAGCAGGGGTTATGAAAACCCCAGAGCTGA
ACCAAGTGTCGCAGATGATGTCGACGCTGAACGTCGGGGGCCTCGCGCCG
ATGGGCTCCCAGCAGATGGGCATGCCGGCATCCGCGGCGTCGATTTTGTC
CATGTTTAACAGCCCCGCGGGCGGCGGCGTCGCGGGCCGCAGTATGGCGG
GGCCTGTTGGTTCATCCCCTGTAGCAGGGGTTATGAAAACCCCAGAGCTG
AACCAAGTGTCGCAGATGATGTCGACGCTGAACGTCGGGGGCCTCGCGCC
GATGGGCTCCCAGCAGATGGGCATGCCGGGTGCCGGTGGTTGGGCGCAGC
AGCACCAGCCCCAGCAAGCGCAGGCTCAGGCGATGGCGTGGGCCCAGCAA
CAGAAGCTCCAGCAGCTGCAGCAACAGCAGCAGCTGCTGCTCCAGCGACA
GCAATGGCAAATGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAACACCC
AGGGGGGGTTGAACGCGGGCGCTTCTGGGGGGGCTATGTTTGGCGTAGGC
CAAGCCGGTGGACACCAGCAACACCCGCAGGGCATGGGCGCGGCCACCAA
CGGTTCGGGGCTAACTGGGCTGCGTGGGGAGGGCGATGGGGCTGCTCAAG
GAAACGGCGCGACGGTAGTGATGCCCGGCGGATTGGGAGCAGGGGCGAGC
GGCATGGGGATGGGGGGGCTGCGGTAAGGTGCCGGTGGTTGGGCGCAGCA
GCACCAGCCCCAGCAAGCGCAGGCTCAGGCGATGGCGTGGGCCCAGCAAC
AGAAGCTCCAGCAGCTGCAGCAACAGCAGCAGCTGCTGCTCCAGCGACAG
CAATGGCAAATGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAACACCCA
GGGGGGGTTGAACGCGGGCGCTTCTGGGGGGGCTATGTTTGGCGTAGGCC
AAGCCGGTGGACACCAGCAACACCCGCAGGGCATGGGCGCGGCCACCAAC
GGTTCGGGGCTAACTGGGCTGCGTGGGGAGGGCGATGGGGCTGCTCAAGG
AAACGGCGCGACGGTAGTGATGCCCGGCGGATTGGGAGCAGGGGCGAGCG
GCATGGGGATGGGGGGGCTGCGGTAA
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