mRNA_E-siliculosus-1a_F_contig126.1600.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig126.1600.1
Unique NamemRNA_E-siliculosus-1a_F_contig126.1600.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig126.1600.1 vs. uniprot
Match: A0A6H5JNX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX8_9PHAE)

HSP 1 Score: 555 bits (1429), Expect = 1.210e-191
Identity = 269/284 (94.72%), Postives = 281/284 (98.94%), Query Frame = 1 
Query:    1 RETVFSPGTPARGIGQKWTDVAGLSTPVAEHIVTAGRVVARGIWAAGSALSDFGRSTAEAARAVGGILSAYEVASVNRDVSNGPVALTFDVGKDSDAAREVWQSTQPASYDRGWGTWDWTSTDILAYWEANWGVFSLCLRLHAPDTAWGRTIRAVYDLTTAFDALPKDFLDRVLKLAWAARPSNDGLQEVISRNSTETVSPYPRRQTPRAVMTTGQYKDLCKGDNGAGVRCLGLMLVQAALVPDGNSEVSPRGQCFAPDALCHIKGVVTGLSRGGGPIMLGAML 852
            R+TVFSPGTPARGIGQKWTDVAGLSTPVAEHIVTAGRVVARGIWAAGSALSDFGRSTAEAARAVGGILSAYEVASVNRDVSNGP+ALTF+VGKDS+AAREVWQSTQPASYDRGWGTWDWTSTDILAYWEANWGVFSLCLRLH PDTAWGRTIRAVYDLTT FDALPKDFLDRVLKLAWAARPS+DGLQE+ISRNST+T+SPYPR QTPR+VMTTGQYKDLCKGDNGAGVRCLGLMLVQAALVPDGNSEVSPRG+CFAPDALCH+KGVVTGL+RGGGPIMLGAML
Sbjct:  426 RDTVFSPGTPARGIGQKWTDVAGLSTPVAEHIVTAGRVVARGIWAAGSALSDFGRSTAEAARAVGGILSAYEVASVNRDVSNGPLALTFNVGKDSNAAREVWQSTQPASYDRGWGTWDWTSTDILAYWEANWGVFSLCLRLHGPDTAWGRTIRAVYDLTTGFDALPKDFLDRVLKLAWAARPSSDGLQEMISRNSTKTISPYPRTQTPRSVMTTGQYKDLCKGDNGAGVRCLGLMLVQAALVPDGNSEVSPRGKCFAPDALCHVKGVVTGLARGGGPIMLGAML 709
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig126.1600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNX8_9PHAE1.210e-19194.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig126contigE-siliculosus-1a_F_contig126:19628..20481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size852
Model size854
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927780.9964125-CDS-E-siliculosus-1a_F_contig126:19627..204791622927780.9964125-CDS-E-siliculosus-1a_F_contig126:19627..20479Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 19628..20479 +
1696318677.069818-CDS-E-siliculosus-1a_F_contig126:19627..204791696318677.069818-CDS-E-siliculosus-1a_F_contig126:19627..20479Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 19628..20479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig126.1600.1prot_E-siliculosus-1a_F_contig126.1600.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig126 19628..20479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig126.1600.1

>prot_E-siliculosus-1a_F_contig126.1600.1 ID=prot_E-siliculosus-1a_F_contig126.1600.1|Name=mRNA_E-siliculosus-1a_F_contig126.1600.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=284bp
RETVFSPGTPARGIGQKWTDVAGLSTPVAEHIVTAGRVVARGIWAAGSAL
SDFGRSTAEAARAVGGILSAYEVASVNRDVSNGPVALTFDVGKDSDAARE
VWQSTQPASYDRGWGTWDWTSTDILAYWEANWGVFSLCLRLHAPDTAWGR
TIRAVYDLTTAFDALPKDFLDRVLKLAWAARPSNDGLQEVISRNSTETVS
PYPRRQTPRAVMTTGQYKDLCKGDNGAGVRCLGLMLVQAALVPDGNSEVS
PRGQCFAPDALCHIKGVVTGLSRGGGPIMLGAML
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mRNA from alignment at E-siliculosus-1a_F_contig126:19628..20481+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig126.1600.1 ID=mRNA_E-siliculosus-1a_F_contig126.1600.1|Name=mRNA_E-siliculosus-1a_F_contig126.1600.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=854bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig126:19628..20481+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGGAGACCGTGTTTAGCCCGGGGACTCCAGCGCGGGGGATCGGTCAAAA
GTGGACCGACGTCGCGGGCTTGAGCACTCCCGTGGCGGAACACATCGTAA
CGGCAGGTCGTGTTGTAGCGAGAGGGATCTGGGCAGCTGGTTCAGCGCTG
TCTGACTTCGGGCGCTCAACCGCCGAGGCCGCGAGGGCGGTCGGCGGCAT
TCTCTCTGCCTATGAAGTGGCGTCCGTGAACCGCGACGTTTCGAACGGAC
CGGTTGCCCTCACTTTCGACGTCGGGAAAGATAGCGACGCCGCCAGGGAG
GTGTGGCAGAGCACTCAACCGGCCTCCTATGACCGTGGGTGGGGGACGTG
GGACTGGACGTCCACTGACATCCTGGCTTACTGGGAGGCCAACTGGGGCG
TGTTCTCCCTCTGTTTACGCCTCCACGCCCCGGATACCGCCTGGGGCAGG
ACCATTAGAGCAGTCTATGATCTGACCACAGCATTTGATGCGCTGCCTAA
AGACTTCCTAGACCGGGTGTTGAAATTGGCGTGGGCGGCGCGGCCATCCA
ACGATGGCTTGCAGGAAGTGATCAGTCGGAACTCTACTGAGACAGTTTCT
CCCTATCCTAGGAGACAAACTCCAAGGGCAGTGATGACCACGGGTCAATA
CAAGGATCTTTGTAAGGGGGACAACGGTGCCGGGGTGAGGTGTCTTGGGC
TGATGTTGGTCCAGGCGGCCTTAGTGCCTGACGGCAACTCGGAGGTGAGC
CCACGCGGCCAGTGCTTCGCCCCCGACGCCCTGTGCCATATCAAGGGGGT
CGTGACCGGTCTTTCCCGGGGTGGAGGGCCCATCATGTTAGGGGCTATGC
TAGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig126:19628..20481+

>mRNA_E-siliculosus-1a_F_contig126.1600.1 ID=mRNA_E-siliculosus-1a_F_contig126.1600.1|Name=mRNA_E-siliculosus-1a_F_contig126.1600.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1704bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig126:19628..20481+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGGAGACCGTGTTTAGCCCGGGGACTCCAGCGCGGGGGATCGGTCAAAA
GTGGACCGACGTCGCGGGCTTGAGCACTCCCGTGGCGGAACACATCGTAA
CGGCAGGTCGTGTTGTAGCGAGAGGGATCTGGGCAGCTGGTTCAGCGCTG
TCTGACTTCGGGCGCTCAACCGCCGAGGCCGCGAGGGCGGTCGGCGGCAT
TCTCTCTGCCTATGAAGTGGCGTCCGTGAACCGCGACGTTTCGAACGGAC
CGGTTGCCCTCACTTTCGACGTCGGGAAAGATAGCGACGCCGCCAGGGAG
GTGTGGCAGAGCACTCAACCGGCCTCCTATGACCGTGGGTGGGGGACGTG
GGACTGGACGTCCACTGACATCCTGGCTTACTGGGAGGCCAACTGGGGCG
TGTTCTCCCTCTGTTTACGCCTCCACGCCCCGGATACCGCCTGGGGCAGG
ACCATTAGAGCAGTCTATGATCTGACCACAGCATTTGATGCGCTGCCTAA
AGACTTCCTAGACCGGGTGTTGAAATTGGCGTGGGCGGCGCGGCCATCCA
ACGATGGCTTGCAGGAAGTGATCAGTCGGAACTCTACTGAGACAGTTTCT
CCCTATCCTAGGAGACAAACTCCAAGGGCAGTGATGACCACGGGTCAATA
CAAGGATCTTTGTAAGGGGGACAACGGTGCCGGGGTGAGGTGTCTTGGGC
TGATGTTGGTCCAGGCGGCCTTAGTGCCTGACGGCAACTCGGAGGTGAGC
CCACGCGGCCAGTGCTTCGCCCCCGACGCCCTGTGCCATATCAAGGGGGT
CGTGACCGGTCTTTCCCGGGGTGGAGGGCCCATCATGTTAGGGGCTATGC
TACGGGAGACCGTGTTTAGCCCGGGGACTCCAGCGCGGGGGATCGGTCAA
AAGTGGACCGACGTCGCGGGCTTGAGCACTCCCGTGGCGGAACACATCGT
AACGGCAGGTCGTGTTGTAGCGAGAGGGATCTGGGCAGCTGGTTCAGCGC
TGTCTGACTTCGGGCGCTCAACCGCCGAGGCCGCGAGGGCGGTCGGCGGC
ATTCTCTCTGCCTATGAAGTGGCGTCCGTGAACCGCGACGTTTCGAACGG
ACCGGTTGCCCTCACTTTCGACGTCGGGAAAGATAGCGACGCCGCCAGGG
AGGTGTGGCAGAGCACTCAACCGGCCTCCTATGACCGTGGGTGGGGGACG
TGGGACTGGACGTCCACTGACATCCTGGCTTACTGGGAGGCCAACTGGGG
CGTGTTCTCCCTCTGTTTACGCCTCCACGCCCCGGATACCGCCTGGGGCA
GGACCATTAGAGCAGTCTATGATCTGACCACAGCATTTGATGCGCTGCCT
AAAGACTTCCTAGACCGGGTGTTGAAATTGGCGTGGGCGGCGCGGCCATC
CAACGATGGCTTGCAGGAAGTGATCAGTCGGAACTCTACTGAGACAGTTT
CTCCCTATCCTAGGAGACAAACTCCAAGGGCAGTGATGACCACGGGTCAA
TACAAGGATCTTTGTAAGGGGGACAACGGTGCCGGGGTGAGGTGTCTTGG
GCTGATGTTGGTCCAGGCGGCCTTAGTGCCTGACGGCAACTCGGAGGTGA
GCCCACGCGGCCAGTGCTTCGCCCCCGACGCCCTGTGCCATATCAAGGGG
GTCGTGACCGGTCTTTCCCGGGGTGGAGGGCCCATCATGTTAGGGGCTAT
GCTA
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