mRNA_E-siliculosus-1a_F_contig126.1599.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig126.1599.1
Unique NamemRNA_E-siliculosus-1a_F_contig126.1599.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig126.1599.1 vs. uniprot
Match: A0A6H5JNX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX8_9PHAE)

HSP 1 Score: 323 bits (828), Expect = 1.070e-103
Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 1 
Query:    4 YTCFLLNFIVEDVIGDSVSGPGPCFCGGLAGAVGWWPASWDRMPLGHVLSVMSLATGSDLYEQDGALVYRYKFFKVRAVLSIDATSGTRAVPGHLVSAVLKFRNLASLIRGSWVSYPPFKAMKEGMVRRERYVGWVASGRGNTRISMTGGYTPAPRG 474
            YTCFLLNFIVEDVIGD VSGPGPCFCGGLAGAVGWWPASWDR+PLGHVLSVMSLATGSDLYEQDGALVYRYKFFKVRAVLSIDATSGTRAVPGHLVSAVLKFRNLASLIRGSWVSYPPFKAMKEGMVRRERYVGWVASGRGNTRISMTGGYTPAPRG
Sbjct:  243 YTCFLLNFIVEDVIGDRVSGPGPCFCGGLAGAVGWWPASWDRIPLGHVLSVMSLATGSDLYEQDGALVYRYKFFKVRAVLSIDATSGTRAVPGHLVSAVLKFRNLASLIRGSWVSYPPFKAMKEGMVRRERYVGWVASGRGNTRISMTGGYTPAPRG 399
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig126.1599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNX8_9PHAE1.070e-10398.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig126contigE-siliculosus-1a_F_contig126:19082..19557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size474
Model size477
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927780.9526002-CDS-E-siliculosus-1a_F_contig126:19081..195551622927780.9526002-CDS-E-siliculosus-1a_F_contig126:19081..19555Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 19082..19555 +
1696318677.0616202-CDS-E-siliculosus-1a_F_contig126:19081..195551696318677.0616202-CDS-E-siliculosus-1a_F_contig126:19081..19555Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig126 19082..19555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig126.1599.1prot_E-siliculosus-1a_F_contig126.1599.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig126 19082..19555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig126.1599.1

>prot_E-siliculosus-1a_F_contig126.1599.1 ID=prot_E-siliculosus-1a_F_contig126.1599.1|Name=mRNA_E-siliculosus-1a_F_contig126.1599.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=158bp
AYTCFLLNFIVEDVIGDSVSGPGPCFCGGLAGAVGWWPASWDRMPLGHVL
SVMSLATGSDLYEQDGALVYRYKFFKVRAVLSIDATSGTRAVPGHLVSAV
LKFRNLASLIRGSWVSYPPFKAMKEGMVRRERYVGWVASGRGNTRISMTG
GYTPAPRG
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mRNA from alignment at E-siliculosus-1a_F_contig126:19082..19557+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig126.1599.1 ID=mRNA_E-siliculosus-1a_F_contig126.1599.1|Name=mRNA_E-siliculosus-1a_F_contig126.1599.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=476bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig126:19082..19557+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGTATACCTGCTTCTTACTAAACTTCATAGTCGAGGACGTCATCGGCGA
TAGTGTGAGCGGTCCAGGACCCTGCTTTTGTGGTGGACTAGCGGGGGCGG
TGGGCTGGTGGCCCGCCAGCTGGGACAGGATGCCCCTCGGACATGTCCTC
AGCGTCATGTCGCTGGCCACCGGGTCTGACCTGTATGAGCAGGACGGGGC
GCTGGTGTACAGGTACAAGTTCTTCAAGGTTCGGGCAGTCCTATCCATAG
ATGCTACGTCTGGGACTAGGGCCGTACCTGGGCACCTGGTGTCCGCCGTC
CTCAAGTTCAGAAATTTGGCGAGTCTCATTAGGGGGAGCTGGGTGTCATA
TCCCCCCTTCAAGGCAATGAAGGAGGGGATGGTCCGAAGAGAGAGATATG
TCGGATGGGTCGCGTCTGGCCGAGGGAACACGCGGATCTCAATGACCGGC
GGGTATACCCCAGCACCCAGGGGCCA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig126:19082..19557+

>mRNA_E-siliculosus-1a_F_contig126.1599.1 ID=mRNA_E-siliculosus-1a_F_contig126.1599.1|Name=mRNA_E-siliculosus-1a_F_contig126.1599.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=948bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig126:19082..19557+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGTATACCTGCTTCTTACTAAACTTCATAGTCGAGGACGTCATCGGCGA
TAGTGTGAGCGGTCCAGGACCCTGCTTTTGTGGTGGACTAGCGGGGGCGG
TGGGCTGGTGGCCCGCCAGCTGGGACAGGATGCCCCTCGGACATGTCCTC
AGCGTCATGTCGCTGGCCACCGGGTCTGACCTGTATGAGCAGGACGGGGC
GCTGGTGTACAGGTACAAGTTCTTCAAGGTTCGGGCAGTCCTATCCATAG
ATGCTACGTCTGGGACTAGGGCCGTACCTGGGCACCTGGTGTCCGCCGTC
CTCAAGTTCAGAAATTTGGCGAGTCTCATTAGGGGGAGCTGGGTGTCATA
TCCCCCCTTCAAGGCAATGAAGGAGGGGATGGTCCGAAGAGAGAGATATG
TCGGATGGGTCGCGTCTGGCCGAGGGAACACGCGGATCTCAATGACCGGC
GGGTATACCCCAGCACCCAGGGGCGCGTATACCTGCTTCTTACTAAACTT
CATAGTCGAGGACGTCATCGGCGATAGTGTGAGCGGTCCAGGACCCTGCT
TTTGTGGTGGACTAGCGGGGGCGGTGGGCTGGTGGCCCGCCAGCTGGGAC
AGGATGCCCCTCGGACATGTCCTCAGCGTCATGTCGCTGGCCACCGGGTC
TGACCTGTATGAGCAGGACGGGGCGCTGGTGTACAGGTACAAGTTCTTCA
AGGTTCGGGCAGTCCTATCCATAGATGCTACGTCTGGGACTAGGGCCGTA
CCTGGGCACCTGGTGTCCGCCGTCCTCAAGTTCAGAAATTTGGCGAGTCT
CATTAGGGGGAGCTGGGTGTCATATCCCCCCTTCAAGGCAATGAAGGAGG
GGATGGTCCGAAGAGAGAGATATGTCGGATGGGTCGCGTCTGGCCGAGGG
AACACGCGGATCTCAATGACCGGCGGGTATACCCCAGCACCCAGGGGC
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