mRNA_E-siliculosus-1a_F_contig1259.1596.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1259.1596.1
Unique NamemRNA_E-siliculosus-1a_F_contig1259.1596.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1259.1596.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 3.010e-50
Identity = 82/103 (79.61%), Postives = 92/103 (89.32%), Query Frame = 1 
Query:    1 ILWRPLEIGLERVPSVVNAVVRLHNFLRRRRARIPRSPWQVTQPTEVRFRPDGGLEGGYFETVPTRGRPSRGATACAPREAIREYLEQMAVGRPRWNLQRNPG 309
            ILWRPL++ LERV SV+N+VVRLHNFLRRRRARIPRSPW+VTQP EVRFRPDG LEG YF+TVPTRGR +RG  A APREAIR+YLEQ ++GRPRWNLQRN G
Sbjct:  314 ILWRPLDMRLERVSSVINSVVRLHNFLRRRRARIPRSPWRVTQPVEVRFRPDGSLEGTYFDTVPTRGRQTRGGRASAPREAIRQYLEQYSIGRPRWNLQRNSG 416
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BLAST of mRNA_E-siliculosus-1a_F_contig1259.1596.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 9.110e-44
Identity = 72/101 (71.29%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:    1 ILWRPLEIGLERVPSVVNAVVRLHNFLRRRRARIPRSPWQVTQPTEVRFRPDGGLEGGYFETVPTRGRPSRGATACAPREAIREYLEQMAVGRPRWNLQRN 303
            ILWRPL++ L RV SV+NAVVRLHNFLRR RA++P+SPW+V QP EVRF PDG LEG Y++TVPTRGRP+ G    APREAIR+YL+Q ++GRPRWNLQRN
Sbjct:  248 ILWRPLQVKLGRVSSVMNAVVRLHNFLRRWRAKVPQSPWRVDQPQEVRFAPDGSLEGTYYDTVPTRGRPTTGQRVSAPREAIRQYLKQYSIGRPRWNLQRN 348
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BLAST of mRNA_E-siliculosus-1a_F_contig1259.1596.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.360e-36
Identity = 63/101 (62.38%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:    1 ILWRPLEIGLERVPSVVNAVVRLHNFLRRRRARIPRSPWQVTQPTEVRFRPDGGLEGGYFETVPTRGRPSRGATACAPREAIREYLEQMAVGRPRWNLQRN 303
            ILW+PL I L+RV  V+NA+VRLHNFLRRRRA + +S W V  P  V F PDGG++G Y++TVPTRGRPS+ A  C PRE IR+YL+Q ++GRPR+NL RN
Sbjct:  318 ILWKPLAIRLDRVGHVMNAIVRLHNFLRRRRAPVLQSAWNVPMPESVTFHPDGGIDGSYYDTVPTRGRPSKAAEVCMPREIIRDYLDQKSMGRPRFNLNRN 418
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BLAST of mRNA_E-siliculosus-1a_F_contig1259.1596.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 4.760e-18
Identity = 51/104 (49.04%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    1 ILWRPLEIGLERVPSVVNAVVRLHNFLRRRRARIP-RSPWQVTQPTEVRFRPDGGLEGGYFETVPTR-GRPSRG-ATACAPREAIREYLEQMAVGRPRWNLQRN 303
            ILWRP+E+ +E+   VVNAVVRLHNF R R+  +P  +      P EV F  DG +   YFETVP R GRP +  A A  PREAIR+ LE   + RP  N+ R+
Sbjct:  155 ILWRPMEVRIEKFEHVVNAVVRLHNFCRDRKVDVPTENTGSAIPPPEVAFDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLMRPEHNIARS 258
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BLAST of mRNA_E-siliculosus-1a_F_contig1259.1596.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.490e-17
Identity = 51/104 (49.04%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    1 ILWRPLEIGLERVPSVVNAVVRLHNFLRRRRARIP-RSPWQVTQPTEVRFRPDGGLEGGYFETVPTR-GRPSRG-ATACAPREAIREYLEQMAVGRPRWNLQRN 303
            ILWRP+E+ +E+   VVNAVVRLHNF R R+  +P  +      P EV F  DG +   YFETVP R GRP +  A A  PREAIR+ LE   + RP  N+ R+
Sbjct:  307 ILWRPMEVRIEKFEHVVNAVVRLHNFCRDRKVDVPTENTGSAIPPPEVAFDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLMRPEHNIARS 410
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BLAST of mRNA_E-siliculosus-1a_F_contig1259.1596.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.780e-16
Identity = 50/104 (48.08%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:    1 ILWRPLEIGLERVPSVVNAVVRLHNFLRRRRARIP-RSPWQVTQPTEVRFRPDGGLEGGYFETVPTR-GRPSRG-ATACAPREAIREYLEQMAVGRPRWNLQRN 303
            ILWRP+E+ +E+   VVNAVVRLHNF   R+  +P  +      P EV F  DG +   YFETVP R GRP +  A A  PREAIR+ LE   + RP  N+ R+
Sbjct:  286 ILWRPMEVRIEKFEHVVNAVVRLHNFCWDRKVDVPTENTGSAIPPPEVAFDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLMRPEHNIARS 389
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BLAST of mRNA_E-siliculosus-1a_F_contig1259.1596.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 5.830e-14
Identity = 47/90 (52.22%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    1 ILWRPLEIGLERVPSVVNAVVRLHNFLRRRRARIP-RSPWQVTQPTEVRFRPDGGLEGGYFETVPTR-GRPSRG-ATACAPREAIREYLE 261
            ILWRP+E+ +E+   VVNAVVRLHNF R R+  +P  +      PTEV F  D  +   YFETVP R GRP +  A A  PREAIR+ LE
Sbjct:  360 ILWRPVEVRIEKFEHVVNAVVRLHNFCRDRKVDVPTENTGSAIPPTEVAFDDDCLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELE 449
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1259.1596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K3F2_9PHAE3.010e-5079.61DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KCG0_9PHAE9.110e-4471.29DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE2.360e-3662.38DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KNF2_9PHAE4.760e-1849.04DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE2.490e-1749.04DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5JJA1_9PHAE2.780e-1648.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1X4_9PHAE5.830e-1452.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1259contigE-siliculosus-1a_F_contig1259:19313..19900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size318
Model size589
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927780.5613458-CDS-E-siliculosus-1a_F_contig1259:19312..196301622927780.5613458-CDS-E-siliculosus-1a_F_contig1259:19312..19630Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1259 19313..19630 +
1696318676.9291308-CDS-E-siliculosus-1a_F_contig1259:19312..196301696318676.9291308-CDS-E-siliculosus-1a_F_contig1259:19312..19630Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1259 19313..19630 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927780.573616-UTR-E-siliculosus-1a_F_contig1259:19630..199001622927780.573616-UTR-E-siliculosus-1a_F_contig1259:19630..19900Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1259 19631..19900 +
1696318676.9382687-UTR-E-siliculosus-1a_F_contig1259:19630..199001696318676.9382687-UTR-E-siliculosus-1a_F_contig1259:19630..19900Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1259 19631..19900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1259.1596.1prot_E-siliculosus-1a_F_contig1259.1596.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1259 19313..19630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1259.1596.1

>prot_E-siliculosus-1a_F_contig1259.1596.1 ID=prot_E-siliculosus-1a_F_contig1259.1596.1|Name=mRNA_E-siliculosus-1a_F_contig1259.1596.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=106bp
ILWRPLEIGLERVPSVVNAVVRLHNFLRRRRARIPRSPWQVTQPTEVRFR
PDGGLEGGYFETVPTRGRPSRGATACAPREAIREYLEQMAVGRPRWNLQR
NPGGE*
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mRNA from alignment at E-siliculosus-1a_F_contig1259:19313..19900+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1259.1596.1 ID=mRNA_E-siliculosus-1a_F_contig1259.1596.1|Name=mRNA_E-siliculosus-1a_F_contig1259.1596.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=588bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1259:19313..19900+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATTTTGTGGCGGCCCCTAGAGATAGGACTTGAGCGAGTCCCCTCGGTCGT
CAACGCCGTGGTCCGCCTGCACAACTTCTTGCGGCGGCGGAGAGCGAGGA
TACCACGGAGCCCTTGGCAGGTCACCCAACCGACAGAAGTCCGATTCCGG
CCGGACGGGGGCCTGGAGGGAGGCTACTTCGAGACCGTCCCCACACGTGG
ACGACCATCGAGGGGGGCGACGGCTTGCGCCCCGCGAGAGGCTATTCGCG
AGTACCTGGAGCAGATGGCGGTCGGGCGGCCGAGGTGGAACCTCCAGCGA
AATCCGGGCGGTGAATAAAAAGCATCTAGACCGGAGACTTGAGCAAGTAT
CACAACTTGGCAGTATTCGGAGCGGGGCGGGTTCTTTTGCCTACGGGGGA
CGTGTTGGCCACTGCTGTCGGTAGTAGCTGTGGCGGGGGATATGCTGTGT
CCTGTGTCGTAGCCCTCTGTGTCGCGCAGACGCCGAAAGCAGGCGTACAC
AAAAATAAGTGCTGTCGATGCCTAGCTTTGAGGACCAACGTTATTTTCCC
GCAAATGTACATGTTGTTCGTAAGGATAGCCAAGCGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1259:19313..19900+

>mRNA_E-siliculosus-1a_F_contig1259.1596.1 ID=mRNA_E-siliculosus-1a_F_contig1259.1596.1|Name=mRNA_E-siliculosus-1a_F_contig1259.1596.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=636bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1259:19313..19900+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATTTTGTGGCGGCCCCTAGAGATAGGACTTGAGCGAGTCCCCTCGGTCGT
CAACGCCGTGGTCCGCCTGCACAACTTCTTGCGGCGGCGGAGAGCGAGGA
TACCACGGAGCCCTTGGCAGGTCACCCAACCGACAGAAGTCCGATTCCGG
CCGGACGGGGGCCTGGAGGGAGGCTACTTCGAGACCGTCCCCACACGTGG
ACGACCATCGAGGGGGGCGACGGCTTGCGCCCCGCGAGAGGCTATTCGCG
AGTACCTGGAGCAGATGGCGGTCGGGCGGCCGAGGTGGAACCTCCAGCGA
AATCCGGGCGGTGAATAAATTTTGTGGCGGCCCCTAGAGATAGGACTTGA
GCGAGTCCCCTCGGTCGTCAACGCCGTGGTCCGCCTGCACAACTTCTTGC
GGCGGCGGAGAGCGAGGATACCACGGAGCCCTTGGCAGGTCACCCAACCG
ACAGAAGTCCGATTCCGGCCGGACGGGGGCCTGGAGGGAGGCTACTTCGA
GACCGTCCCCACACGTGGACGACCATCGAGGGGGGCGACGGCTTGCGCCC
CGCGAGAGGCTATTCGCGAGTACCTGGAGCAGATGGCGGTCGGGCGGCCG
AGGTGGAACCTCCAGCGAAATCCGGGCGGTGAATAA
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