mRNA_E-siliculosus-1a_F_contig1259.1595.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1259.1595.1
Unique NamemRNA_E-siliculosus-1a_F_contig1259.1595.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1259.1595.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 538 bits (1386), Expect = 1.390e-188
Identity = 261/298 (87.58%), Postives = 276/298 (92.62%), Query Frame = 3
Query:  345 MARPPSRRAGGRSW*RGKTKLRMRQLLELVMIMVLMEEDDAPETRGDFVYRERRSWYTYVKPMVEDGTFRLRFRMDYTEFADLADMLRPKLEKDEKMGALRNGVIPVEFQLAMALRFLAGGSIFEVMDGNVIARSTAYAVVHRVIDAINQTRELDCVWPEGDDALDQCGMYRQRSTNGVIRMCVGAMDGLFVRLTQPSLRRHVNPRAFYSGHKKAFGMNFQGVCNARYEITAWTMNCPGSCNDRTAFKHSGFGKVLNKLPPGCYIVGDAAYPASDRVLVPYPGTSLTLSQDAYNFYQS 1238
            MAR P+ R   RSW RGKTK RMRQLLEL+MIMVLM+E D P+TR  FV RERRSWYTY KPMV+DGTFRLRFRMDYTEFA LADMLRPKLE++E+MGALRNGVIPVEFQLAMALRFLAGGS+FEVMDGNVIARSTAYA+VHRVIDAINQTRELDCVWPEG+DALDQCGMYR+RSTNGVIRMCVGAMDGLFVR+TQPSLRRHVNPR+FYSGHKK FGMNFQGVCNARYEI AWTMNCPGSCNDRTAFKHS FG VL  LPPG YIVGDAAYPASD+VLVPYPGTSLT SQDAYNFYQS
Sbjct:    1 MARAPASR---RSWLRGKTKKRMRQLLELLMIMVLMDEGDPPQTRDKFVRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGMYRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQGVCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPGAYIVGDAAYPASDQVLVPYPGTSLTRSQDAYNFYQS 295          
BLAST of mRNA_E-siliculosus-1a_F_contig1259.1595.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 439 bits (1128), Expect = 2.600e-149
Identity = 216/299 (72.24%), Postives = 240/299 (80.27%), Query Frame = 3
Query:  345 MARPPSRRAGGRSW*RG-KTKLRMRQLLELVMIMVLMEEDDAPETRGDFVYRERRSWYTYVKPMVEDGTFRLRFRMDYTEFADLADMLRPKLEKDEKMGALRNGVIPVEFQLAMALRFLAGGSIFEVMDGNVIARSTAYAVVHRVIDAINQTRELDCVWPEGDDALDQCGMYRQRSTNGVIRMCVGAMDGLFVRLTQPSLRRHVNPRAFYSGHKKAFGMNFQGVCNARYEITAWTMNCPGSCNDRTAFKHSGFGKVLNKLPPGCYIVGDAAYPASDRVLVPYPGTSLTLSQDAYNFYQS 1238
            MARPP   A   S+ RG K                     DAP  RG+FVYRERRS+YTYV+PMVED TFR RFRMDYT+F  LAD+LRPKL++DEKMGALRNG IPVEFQLAM LRFLAGGS+FEVMD NVIA+STAYA+VHRVIDAINQTR+L+C WP GDDA  Q  +YR+RSTNGVIR CVGAMDGLFVRL  P L+RH  P +FYSGHKKAFGMNFQG+CNA YEI  WTMNCPGS NDRTAFKHSGF  +L+K+PP C+IVGDAAYPAS+RVLVP PGT+LTLSQDAYNFYQS
Sbjct:    1 MARPPRSHARRSSYKRGQKXXXXXXXXXXXXXXXXXXXXSDAPAHRGNFVYRERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGDDAEAQAELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQGICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIVGDAAYPASNRVLVPDPGTALTLSQDAYNFYQS 299          
BLAST of mRNA_E-siliculosus-1a_F_contig1259.1595.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 328 bits (841), Expect = 6.040e-107
Identity = 151/179 (84.36%), Postives = 162/179 (90.50%), Query Frame = 3
Query:  702 GGSIFEVMDGNVIARSTAYAVVHRVIDAINQTRELDCVWPEGDDALDQCGMYRQRSTNGVIRMCVGAMDGLFVRLTQPSLRRHVNPRAFYSGHKKAFGMNFQGVCNARYEITAWTMNCPGSCNDRTAFKHSGFGKVLNKLPPGCYIVGDAAYPASDRVLVPYPGTSLTLSQDAYNFYQS 1238
            GGSIFEVMDG V A+STAYA+V+RVIDAINQTRE DCVWPEGDDALDQCG+YRQRSTN VI MCVGAMDGLFV + +PSLRRHVNPR FYSGHKK FGMNFQ VCNARY+ITAWTMNCPGSCNDRTAFKHSGF +VL  LP G YIVGD AYPASD+VLVPYPGT+LT SQD+YNFYQS
Sbjct:   51 GGSIFEVMDGCVFAKSTAYAIVYRVIDAINQTREFDCVWPEGDDALDQCGVYRQRSTNNVIHMCVGAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQAVCNARYKITAWTMNCPGSCNDRTAFKHSGFERVLKTLPKGAYIVGDGAYPASDQVLVPYPGTTLTPSQDSYNFYQS 229          
BLAST of mRNA_E-siliculosus-1a_F_contig1259.1595.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 1.070e-87
Identity = 134/216 (62.04%), Postives = 165/216 (76.39%), Query Frame = 3
Query:  591 LADMLRPKLEKDEKMGALRNGVIPVEFQLAMALRFLAGGSIFEVMDGNVIARSTAYAVVHRVIDAINQTRELDCVWPEGDDALDQCGMYRQRSTNGVIRMCVGAMDGLFVRLTQPSLRRHVNPRAFYSGHKKAFGMNFQGVCNARYEITAWTMNCPGSCNDRTAFKHSGFGKVLNKLPPGCYIVGDAAYPASDRVLVPYPGTSLTLSQDAYNFYQS 1238
            L D LRP L+K+++MG LRNG IPVE Q+AM LR+LAGGSI+E MDG+VIARSTAY V   VI+A+N   EL+C WPEG+DA     ++R RS+  V+R CVGA DGLFVR+ +PS +    P  +Y+GHKK FGMNFQ VC+A+Y I AW MNCPGS NDRTAF  SGF K+L  LP G ++VGDAAY AS+RV+VP+PGTSL+ SQDA N+Y S
Sbjct:   73 LVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVS 288          
BLAST of mRNA_E-siliculosus-1a_F_contig1259.1595.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 266 bits (680), Expect = 4.000e-82
Identity = 148/292 (50.68%), Postives = 188/292 (64.38%), Query Frame = 3
Query:  345 MARPPSRRAGGRSW*RGKTKLRMRQLLELVMIMVLMEEDDAP--ETRGDFVYRERRSWYTYVKPMVEDGTFRLRFRMDYTEFADLADMLRPKLEKDEKMGALRNGVIPVEFQLAMALRFLAGGSIFEVMDGNVIARSTAYAVVHRVIDAINQTRELDCVWPEGDDALDQCGMYRQRSTNGVIRMCVGAMDGLFVRLTQPSLRRHVNPRAFYSGHKKAFGMNFQGVCNARYEITAWTMNCPGSCNDRTAFKHSGFGKVLNKLPPGCYIVGDAAYPASDRVLVPYPGTSLTLSQ 1214
            MA  P+RRA         TK R+  LL+ + I+  +   DAP    R   V RERR + TY+KPM++D TF +RFRM+Y +F  L D LRP L+++EK G LRNG IPVE+Q+AM LR+LAGGSI+E MDG+VIARSTAY V   VI+A+N   EL+C WPEG+D  +        +   V+R CVGAMDGLFVR+ +PS +    P  +Y+GHKK FGMNFQ VC               S NDRTAF  SGF K+L  LP G ++VG+AAY AS+RV+VP+PGTS    Q
Sbjct:    1 MAVSPTRRAKRAHRLASVTK-RVSSLLDALAILDNLSALDAPTKRNRSTLVARERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDLPEPPSFSATAALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ-VC---------------SQNDRTAFNFSGFDKLLAGLPEGHFVVGNAAYGASERVVVPFPGTSPPXEQ 275          
BLAST of mRNA_E-siliculosus-1a_F_contig1259.1595.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 1.630e-60
Identity = 124/279 (44.44%), Postives = 160/279 (57.35%), Query Frame = 3
Query:  408 RMRQLLELVMIMVLMEEDDAP--ETRGDFVYRERRSWYTYVKPMVEDGTFRLRFRMDYTEFADLADMLRPKLEKDEKMGALRNGVIPVEFQLAMALRFLAGGSIFEVMDGNVIARSTAYAVVHRVIDAINQTRELDCVWPEGDDALDQCGMYRQRSTNGVIRMCVGAMDGLFVRLTQPSLRRHVNPRAFYSGHKKAFGMNFQGVCNARYEITAWTMNCPGSCNDRTAFKHSGFGKVLNKLPPGCYIVGDAAYPASDRVLVPYPGTSLTLSQDAYNFYQS 1238
            R+  LL+ + I+  +   DAP    R   V RERR + T++KP+++D TF +RFRM+Y +F  L D LRP L K+EKMG LR G IPVE+Q+AM LR+LAGGSI+E MDG+VIARSTAY V   VI+A+N   EL+C WPE    +D            V+R CVGAMDGLFVR+ +PS +    P  +Y+GH+K       GV                                         +VGDAAY AS+RV+VP+PGTSL+ SQDA N Y S
Sbjct:   21 RVSSLLDALAILGNLSALDAPTKRNRSTLVARERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEA--RMD------------VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRK-------GV-----------------------------------------VVGDAAYGASERVVVPFPGTSLSASQDACNNYVS 237          
BLAST of mRNA_E-siliculosus-1a_F_contig1259.1595.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 8.560e-58
Identity = 125/300 (41.67%), Postives = 156/300 (52.00%), Query Frame = 3
Query:  345 MARPPSRRAGGRSW*RGKTKLRMRQLLELVMIMVLMEEDDAPE--TRGDFVYRERRSWYTYVKPMVEDGTFRLRFRMDYTEFADLADMLRPKLEKDEKMGALRNGVIPVEFQLAMALRFLAGGSIFEVMDGNVIARSTAYAVVHRVIDAINQTRELDCVWPEGDDALDQCGMYRQRSTNGVIRMCVGAMDGLFVRLTQPSLRRHVNPRAFYSGHKKAFGMNFQGVCNARYEITAWTMNCPGSCNDRTAFKHSGFGKVLNKLPPGCYIVGDAAYPASDRVLVPYPGTSLTLSQDAYNFYQS 1238
            MA  P+RRA         TK R+  LL+ + I+  +   D P   +R   V R RR + TY+KPM++D TF +RFRM+Y +F  L D LRP L+K+EKMG LRNG IPVE+Q+AM LR+LAGGS +E MDG+VIARSTAY                                                                                    VC+A+Y I AW MNCPGS NDRTAF  SGF K+L  LP G ++VGDAAY AS+RV+VP+PGTSL+ SQDA N+Y S
Sbjct:    1 MAVSPTRRAKRAHRLASVTK-RVSSLLDALAILDNLSALDPPSMRSRSTLVARVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAY----------------------------------------------------------------------------------HAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYMS 217          
BLAST of mRNA_E-siliculosus-1a_F_contig1259.1595.1 vs. uniprot
Match: A0A6H5JHK3_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK3_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 4.800e-51
Identity = 103/277 (37.18%), Postives = 154/277 (55.60%), Query Frame = 3
Query:  420 LLELVMIMVLMEEDDAPETRGDFVYRERRSWYTYVKPMVEDGTFRLRFRMDYTEFADLADMLRPKLEKDEKMGA--LRNGVIPVEFQLAMALRFLAGGSIFEVMDGNVIARSTAYAVVHRVIDAINQTRELDCVW-PEG-DDALDQCGMYRQRSTNGVIRMCVGAMDGLFVRLTQPSLRRHVNPRAFYSGHKKAFGMNFQGVCNARYEITAWTMNCPGSCNDRTAFKHSGFGKVLNKLPPGCYIVGDAAYPASDRVLVPYPGTSLTLSQDAYNFYQS 1238
            +L L ++   + +  AP+ R       R  W  +V+ +   G FR  +RM+   F  LA++LRP LE ++       R+G +PV+ +LA+ALR LAG S  +V     IA+ T + V+  V+DAIN T E+   + P+  DD   Q   +  +ST GV   CV A DGLFV+   PS     N  +++SG+K  +G+N Q  C+A Y   + +    G+ ND TA+  S     + +LPPG Y++GDAAYP SD +L PYPG  L   +D++NF+ S
Sbjct:   42 VLVLTVVTTTVVQSFAPKARLPIHEPRRLDWEEHVRDIKRRGVFRRMYRMEEHSFNKLAELLRPFLESNDFYARKRTRSGAVPVKIRLAVALRMLAGASYLDVAVLFGIAKETVFHVLWEVVDAINNTPEVGAFFFPQTRDDCARQAKEWEAKSTGGVFSGCVAAGDGLFVKTIAPSPVDTPNVLSYFSGNKSGYGLNIQATCDANYRFCSMSAISAGATNDWTAWNRSSLSDSVARLPPGYYVLGDAAYPLSDHLLTPYPGKLLPRDEDSFNFHLS 318          
BLAST of mRNA_E-siliculosus-1a_F_contig1259.1595.1 vs. uniprot
Match: A0A6H5JDE6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE6_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 1.260e-49
Identity = 103/277 (37.18%), Postives = 155/277 (55.96%), Query Frame = 3
Query:  420 LLELVMIMVLMEEDDAPETRGDFVYRERRSWYTYVKPMVEDGTFRLRFRMDYTEFADLADMLRPKLEKDEKMGALR--NGVIPVEFQLAMALRFLAGGSIFEVMDGNVIARSTAYAVVHRVIDAINQTRELD-CVWPEG-DDALDQCGMYRQRSTNGVIRMCVGAMDGLFVRLTQPSLRRHVNPRAFYSGHKKAFGMNFQGVCNARYEITAWTMNCPGSCNDRTAFKHSGFGKVLNKLPPGCYIVGDAAYPASDRVLVPYPGTSLTLSQDAYNFYQS 1238
            +L L ++   + +  AP+ R       R  W  +VK +     FR  +RM+   F  LA++LRP LE+++    LR  +G +PV+ +LA+ALR  AG S  +V     IA+ + + V+ +V+DAIN T  +    +P+  ++   Q   +  +ST G    CV A DGLFV+   P++    N  +F+SGHK  +G+N Q  C+A Y   + +    GS ND TA+  S     + +LPPG Y++GDAAYP SD++L PYPG  L   QDA+NFY S
Sbjct:   41 VLLLTVVTSTVTQRFAPKARQPIHEPRRLDWEEHVKDVRRRKLFRRMYRMEEHSFDKLAELLRPILERNDYSARLRTSSGAVPVKIRLAVALRMFAGASYIDVALLFGIAKESVFNVMWQVVDAINNTPTVGPFFFPQTVEECTRQAREWEVKSTGGAFAGCVAAGDGLFVKTFAPTVVNTPNVLSFFSGHKNGYGLNIQATCDANYRFCSMSAIAAGSTNDWTAWNRSELSDSVARLPPGFYMLGDAAYPLSDQLLTPYPGKLLPRDQDAFNFYLS 317          
BLAST of mRNA_E-siliculosus-1a_F_contig1259.1595.1 vs. uniprot
Match: A0A6H5JUE6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE6_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 2.050e-48
Identity = 102/255 (40.00%), Postives = 148/255 (58.04%), Query Frame = 3
Query:  489 VYRERR-SWYTYVKPMVEDGTFRLRFRMDYTEFADLADMLRPKLEKDEKMGA--LRNGVIPVEFQLAMALRFLAGGSIFEVMDGNVIARSTAYAVVHRVIDAINQTRELD-CVWPEG-DDALDQCGMYRQRSTNGVIRMCVGAMDGLFVRLTQPSLRRHVNPRAFYSGHKKAFGMNFQGVCNARYEITAWTMNCPGSCNDRTAFKHSGFGKVLNKLPPGCYIVGDAAYPASDRVLVPYPGTSLTLSQDAYNFYQS 1238
            V+  RR  W  +V+ +     FR  +RM+   F  LAD+LRP LE+++       R+G +PV+ +LA+ALR LAG S  +V     IA+ T + V+  V+DAIN T E+    +P+  ++   Q   +  +ST G I  CV A DGLFV+   PS     N  +++SG+K  +G+N Q  C+A Y   + +    G+ ND TA+  S   + + +LPPG Y++GDAAYP SD++L PYPG  L   QDAYNFY S
Sbjct:   66 VHEPRRLDWDEHVRDLRRRKVFRRTYRMEEGCFDKLADLLRPILERNDFYARKRTRHGAVPVKHRLAVALRILAGASYMDVAVLFGIAKETVFHVLWEVVDAINNTPEVGPFFFPQTVEECARQAKEWEAKSTGGAISGCVAAGDGLFVKTIAPSPVDTPNVLSYFSGNKSGYGLNIQATCDANYRFCSMSAISAGATNDWTAWNRSELSRAVARLPPGYYMLGDAAYPLSDQLLTPYPGKLLPRDQDAYNFYLS 320          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1259.1595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3F2_9PHAE1.390e-18887.58DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE2.600e-14972.24DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KCG0_9PHAE6.040e-10784.36DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE1.070e-8762.04DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5JJA1_9PHAE4.000e-8250.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS8_9PHAE1.630e-6044.44DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K540_9PHAE8.560e-5841.67DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JHK3_9PHAE4.800e-5137.18DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JDE6_9PHAE1.260e-4937.18DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JUE6_9PHAE2.050e-4840.00DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1259contigE-siliculosus-1a_F_contig1259:17339..18969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size831
Model size1241
Exons2
Hectar predicted targeting categoryother localisation
EggNOG OGs3QI3U@4776,KOG4585@1,KOG4585@2759
EggNOG free text desc.nuclease activity
Seed eggNOG ortholog4792.ETI46469
Seed ortholog evalue1.7e-34
Seed ortholog score153.3
Taxonomic scopeEukaryota
Best eggNOG OGNA|NA|NA
Best tax levelPeronosporales
COG Functional cat.S
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1259.1595.1prot_E-siliculosus-1a_F_contig1259.1595.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1259 17749..18969 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927780.702795-UTR-E-siliculosus-1a_F_contig1259:17338..177481622927780.702795-UTR-E-siliculosus-1a_F_contig1259:17338..17748Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1259 17339..17748 +
1696318676.9913251-UTR-E-siliculosus-1a_F_contig1259:17338..177481696318676.9913251-UTR-E-siliculosus-1a_F_contig1259:17338..17748Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1259 17339..17748 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927780.7409942-CDS-E-siliculosus-1a_F_contig1259:17748..183451622927780.7409942-CDS-E-siliculosus-1a_F_contig1259:17748..18345Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1259 17749..18345 +
1696318677.0027444-CDS-E-siliculosus-1a_F_contig1259:17748..183451696318677.0027444-CDS-E-siliculosus-1a_F_contig1259:17748..18345Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1259 17749..18345 +
1622927780.7870314-CDS-E-siliculosus-1a_F_contig1259:18735..189691622927780.7870314-CDS-E-siliculosus-1a_F_contig1259:18735..18969Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1259 18736..18969 +
1696318677.011845-CDS-E-siliculosus-1a_F_contig1259:18735..189691696318677.011845-CDS-E-siliculosus-1a_F_contig1259:18735..18969Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1259 18736..18969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1259.1595.1

>prot_E-siliculosus-1a_F_contig1259.1595.1 ID=prot_E-siliculosus-1a_F_contig1259.1595.1|Name=mRNA_E-siliculosus-1a_F_contig1259.1595.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=277bp
MRQLLELVMIMVLMEEDDAPETRGDFVYRERRSWYTYVKPMVEDGTFRLR
FRMDYTEFADLADMLRPKLEKDEKMGALRNGVIPVEFQLAMALRFLAGGS
IFEVMDGNVIARSTAYAVVHRVIDAINQTRELDCVWPEGDDALDQCGMYR
QRSTNGVIRMCVGAMDGLFVRLTQPSLRRHVNPRAFYSGHKKAFGMNFQG
VCNARYEITAWTMNCPGSCNDRTAFKHSGFGKVLNKLPPGCYIVGDAAYP
ASDRVLVPYPGTSLTLSQDAYNFYQS*
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mRNA from alignment at E-siliculosus-1a_F_contig1259:17339..18969+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1259.1595.1 ID=mRNA_E-siliculosus-1a_F_contig1259.1595.1|Name=mRNA_E-siliculosus-1a_F_contig1259.1595.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1631bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1259:17339..18969+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCTCCTCGATTATGGTACCTTTCCTGGTGTCGGGAATCGCTGATTTATTT GTTCCGCCGCAAACCGCCCGAAGCGTAACAATTTTCTCTCTGAACCCGCC ACAATTCCGATCCGCGTGAGAGTGTGTCTTATCGGAAAAATCGAAGTTTA AAATCAAAGTCGAAATTCGGTTGAAGTCTAGAAGAGCCGGCCAATACCAA CTTACCCGTCTTATCGAAAAAGCGTGAGAAGCTGAAACAACATCTAGATT TTCAACCGAACGGGCAGGCGAACAGCCCGACAGCCCCGAACAACACACGA TGGGTGCCGTTAACCTTGGCACAGCACACAGCCCCCGGGCAATCATGGCT CGCCCTCCTTCCCGCCGCGCGGGCGGCCGCTCATGGTAGCGAGGAAAGAC AAAGCTGCGCATGAGGCAGCTCCTGGAGCTGGTGATGATAATGGTGCTCA TGGAGGAAGACGATGCTCCCGAGACACGGGGCGACTTCGTGTACCGCGAG CGGAGGAGCTGGTATACCTACGTGAAGCCCATGGTGGAGGATGGCACGTT CAGACTGCGCTTCCGCATGGACTACACAGAGTTCGCGGACCTCGCGGATA TGCTACGGCCGAAGCTCGAGAAGGACGAAAAGATGGGTGCTCTGCGCAAT GGGGTCATCCCGGTCGAGTTTCAGCTGGCGATGGCACTTCGTTTCCTTGC GGGTGGAAGCATTTTCGAGGTGATGGATGGTAACGTGATAGCCAGAAGCA CGGCGTATGCGGTAGTGCACCGCGTCATCGACGCTATCAACCAGACGCGA GAACTCGACTGCGTTTGGCCCGAAGGGGATGACGCGTTGGACCAGTGTGG CATGTACCGGCAGCGGAGCACCAACGGCGTCATCCGCATGTGTGTGGGAG CGATGGATGGTCTGTTCGTCCGCCTCACACAACCGAGTCTCAGGAGGCAT GTGAACCCTCGGGCATTCTACAGCGGGCACAAGAAAGCATTTGGCATGAA CTTTCAGGTGTGTGAGATCGAAGTGCGGACGGGGAGGGTGGGTCACATTG CGTTGAGATTAATTTCTACGCGGCAGCGGCGGCAGCAGCAGCAGCAGCAG CGGTAGTACATCCGACAGCAGCCGGACGGACCCATTTACCAGACCCACCG ACAGAGGCACACAACGCTCACTCCCCACACATATCGCGCGCACGGCATTG AACGCAGCGTAGCAGTCACCCTTAGGGTTAGGCACACTCGTTTGCAGTTT TTGTTTCCATACACGTCGGAAACGTGGTACGCTGGTAGTGTACGGAAAAC TAGCAACGGCAGTACCTTCCAAGAGTATCCTACGAAGAGGCGCCAATGCC TTATATCCTCGCATGCCTATTACTTCACATGCCCCATGATTCCACAGGGT GTCTGCAACGCGCGGTACGAAATCACTGCGTGGACGATGAACTGTCCTGG AAGCTGCAACGACCGCACAGCATTCAAGCACTCCGGTTTCGGCAAGGTCC TCAACAAACTGCCCCCCGGCTGCTACATCGTCGGCGACGCTGCGTACCCG GCCTCCGATCGGGTCCTCGTGCCGTACCCAGGGACTTCCCTCACGCTTAG CCAAGACGCGTACAACTTCTACCAGTCGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1259:17339..18969+

>mRNA_E-siliculosus-1a_F_contig1259.1595.1 ID=mRNA_E-siliculosus-1a_F_contig1259.1595.1|Name=mRNA_E-siliculosus-1a_F_contig1259.1595.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1662bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1259:17339..18969+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGGCAGCTCCTGGAGCTGGTGATGATAATGGTGCTCATGGAGGAAGA
CGATGCTCCCGAGACACGGGGCGACTTCGTGTACCGCGAGCGGAGGAGCT
GGTATACCTACGTGAAGCCCATGGTGGAGGATGGCACGTTCAGACTGCGC
TTCCGCATGGACTACACAGAGTTCGCGGACCTCGCGGATATGCTACGGCC
GAAGCTCGAGAAGGACGAAAAGATGGGTGCTCTGCGCAATGGGGTCATCC
CGGTCGAGTTTCAGCTGGCGATGGCACTTCGTTTCCTTGCGGGTGGAAGC
ATTTTCGAGGTGATGGATGGTAACGTGATAGCCAGAAGCACGGCGTATGC
GGTAGTGCACCGCGTCATCGACGCTATCAACCAGACGCGAGAACTCGACT
GCGTTTGGCCCGAAGGGGATGACGCGTTGGACCAGTGTGGCATGTACCGG
CAGCGGAGCACCAACGGCGTCATCCGCATGTGTGTGGGAGCGATGGATGG
TCTGTTCGTCCGCCTCACACAACCGAGTCTCAGGAGGCATGTGAACCCTC
GGGCATTCTACAGCGGGCACAAGAAAGCATTTGGCATGAACTTTCAGATG
AGGCAGCTCCTGGAGCTGGTGATGATAATGGTGCTCATGGAGGAAGACGA
TGCTCCCGAGACACGGGGCGACTTCGTGTACCGCGAGCGGAGGAGCTGGT
ATACCTACGTGAAGCCCATGGTGGAGGATGGCACGTTCAGACTGCGCTTC
CGCATGGACTACACAGAGTTCGCGGACCTCGCGGATATGCTACGGCCGAA
GCTCGAGAAGGACGAAAAGATGGGTGCTCTGCGCAATGGGGTCATCCCGG
TCGAGTTTCAGCTGGCGATGGCACTTCGTTTCCTTGCGGGTGGAAGCATT
TTCGAGGTGATGGATGGTAACGTGATAGCCAGAAGCACGGCGTATGCGGT
AGTGCACCGCGTCATCGACGCTATCAACCAGACGCGAGAACTCGACTGCG
TTTGGCCCGAAGGGGATGACGCGTTGGACCAGTGTGGCATGTACCGGCAG
CGGAGCACCAACGGCGTCATCCGCATGTGTGTGGGAGCGATGGATGGTCT
GTTCGTCCGCCTCACACAACCGAGTCTCAGGAGGCATGTGAACCCTCGGG
CATTCTACAGCGGGCACAAGAAAGCATTTGGCATGAACTTTCAGGGTGTC
TGCAACGCGCGGTACGAAATCACTGCGTGGACGATGAACTGTCCTGGAAG
CTGCAACGACCGCACAGCATTCAAGCACTCCGGTTTCGGCAAGGTCCTCA
ACAAACTGCCCCCCGGCTGCTACATCGTCGGCGACGCTGCGTACCCGGCC
TCCGATCGGGTCCTCGTGCCGTACCCAGGGACTTCCCTCACGCTTAGCCA
AGACGCGTACAACTTCTACCAGTCGTAGGGTGTCTGCAACGCGCGGTACG
AAATCACTGCGTGGACGATGAACTGTCCTGGAAGCTGCAACGACCGCACA
GCATTCAAGCACTCCGGTTTCGGCAAGGTCCTCAACAAACTGCCCCCCGG
CTGCTACATCGTCGGCGACGCTGCGTACCCGGCCTCCGATCGGGTCCTCG
TGCCGTACCCAGGGACTTCCCTCACGCTTAGCCAAGACGCGTACAACTTC
TACCAGTCGTAG
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