mRNA_E-siliculosus-1a_F_contig12521.1565.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12521.1565.1
Unique NamemRNA_E-siliculosus-1a_F_contig12521.1565.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12521.1565.1 vs. uniprot
Match: A0A2G5KGH1_9FLAO (Uncharacterized protein n=1 Tax=Maribacter sp. 4U21 TaxID=1889779 RepID=A0A2G5KGH1_9FLAO)

HSP 1 Score: 69.3 bits (168), Expect = 3.990e-14
Identity = 35/52 (67.31%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 FFPRSRDKTKSIMKIKNKIFAILAAPAAIPPNPKIPATTANMIKVTVQRNIW 156
            FFP ++D  K IM  KNKIFAI AAPAAIPP P  PAT AN  KV VQRNI+
Sbjct:   11 FFPLNKDTIKRIMNKKNKIFAIPAAPAAIPPKPNTPATNANTTKVIVQRNIY 62
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BLAST of mRNA_E-siliculosus-1a_F_contig12521.1565.1 vs. uniprot
Match: A0A1B9DYS2_9FLAO (Uncharacterized protein n=1 Tax=Flavobacterium crassostreae TaxID=1763534 RepID=A0A1B9DYS2_9FLAO)

HSP 1 Score: 66.6 bits (161), Expect = 2.020e-13
Identity = 35/51 (68.63%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 FFPRSRDKTKSIMKIKNKIFAILAAPAAIPPNPKIPATTANMIKVTVQRNI 153
            F P  RDK    +KIKNKI AILAAPAAIPPNPKIPA  A +I VTV  NI
Sbjct:    9 FRPLIRDKINKTIKIKNKILAILAAPAAIPPNPKIPAIIARIINVTVHLNI 59
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BLAST of mRNA_E-siliculosus-1a_F_contig12521.1565.1 vs. uniprot
Match: A0A2K2Z7A8_9FLAO (Uncharacterized protein n=1 Tax=Formosa algae TaxID=225843 RepID=A0A2K2Z7A8_9FLAO)

HSP 1 Score: 60.5 bits (145), Expect = 6.420e-11
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 FFPRSRDKTKSIMKIKNKIFAILAAPAAIPPNPKIPATTANMIKVTVQRNI 153
            F P +R+ T S   IKN IFAI AAPAAIPPNPK+ AT A +  VTVQR+I
Sbjct:    9 FRPVNREITNSTKNIKNNIFAIPAAPAAIPPNPKMAATIAKITNVTVQRSI 59
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BLAST of mRNA_E-siliculosus-1a_F_contig12521.1565.1 vs. uniprot
Match: A0A090VBS3_9FLAO (Uncharacterized protein n=1 Tax=Algibacter lectus TaxID=221126 RepID=A0A090VBS3_9FLAO)

HSP 1 Score: 59.7 bits (143), Expect = 6.860e-11
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:   43 IKNKIFAILAAPAAIPPNPKIPATTANMIKVTVQRNI 153
            +KN I A+LAAPAAIPPNPK PA +AN+IKVTVQRNI
Sbjct:    1 MKNNILAMLAAPAAIPPNPKTPAISANIIKVTVQRNI 37
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BLAST of mRNA_E-siliculosus-1a_F_contig12521.1565.1 vs. uniprot
Match: A3U9R0_CROAH (Uncharacterized protein n=1 Tax=Croceibacter atlanticus (strain ATCC BAA-628 / HTCC2559 / KCTC 12090) TaxID=216432 RepID=A3U9R0_CROAH)

HSP 1 Score: 57.4 bits (137), Expect = 6.000e-10
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   37 MKIKNKIFAILAAPAAIPPNPKIPATTANMIKVTVQRNI 153
            MKIKN+IFAI +AP+ IPP PKIPAT A +I +TVQRNI
Sbjct:    1 MKIKNRIFAIPSAPSEIPPKPKIPATIAIIINITVQRNI 39
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BLAST of mRNA_E-siliculosus-1a_F_contig12521.1565.1 vs. uniprot
Match: A0A150XIW1_ROSEK (Uncharacterized protein n=1 Tax=Roseivirga ehrenbergii (strain DSM 102268 / JCM 13514 / KCTC 12282 / NCIMB 14502 / KMM 6017) TaxID=279360 RepID=A0A150XIW1_ROSEK)

HSP 1 Score: 50.8 bits (120), Expect = 5.540e-7
Identity = 28/49 (57.14%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    7 PRSRDKTKSIMKIKNKIFAILAAPAAIPPNPKIPATTANMIKVTVQRNI 153
            P  R+ T S  K+KN I A  AAPAA+PP PKIPA  A    V VQRNI
Sbjct:   30 PLKRETTSSTTKMKNTILAKEAAPAAMPPKPKIPAIIAITKNVIVQRNI 78
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BLAST of mRNA_E-siliculosus-1a_F_contig12521.1565.1 vs. uniprot
Match: A0A327VT74_9BACT (Uncharacterized protein n=1 Tax=Chitinophaga dinghuensis TaxID=1539050 RepID=A0A327VT74_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 6.790e-7
Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    7 PRSRDKTKSIMKIKNKIFAILAAPAAIPPNPKIPATTANMIKVTVQRNI 153
            P  ++ T    KIKN+IFA+ AAPAAIP  PKI AT A   K+ VQRNI
Sbjct:   11 PAIKEITNITRKIKNRIFAMDAAPAAIPVKPKIAATIATTKKINVQRNI 59
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BLAST of mRNA_E-siliculosus-1a_F_contig12521.1565.1 vs. uniprot
Match: A3XIL6_LEEBM (Uncharacterized protein n=1 Tax=Leeuwenhoekiella blandensis (strain CECT 7118 / CCUG 51940 / MED217) TaxID=398720 RepID=A3XIL6_LEEBM)

HSP 1 Score: 46.2 bits (108), Expect = 1.560e-5
Identity = 24/37 (64.86%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   43 IKNKIFAILAAPAAIPPNPKIPATTANMIKVTVQRNI 153
            +K  I AIL+AP AIPPNPKI AT A MI +TV  NI
Sbjct:    1 MKKSILAILSAPDAIPPNPKIAATIAIMINITVHFNI 37
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12521.1565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2G5KGH1_9FLAO3.990e-1467.31Uncharacterized protein n=1 Tax=Maribacter sp. 4U2... [more]
A0A1B9DYS2_9FLAO2.020e-1368.63Uncharacterized protein n=1 Tax=Flavobacterium cra... [more]
A0A2K2Z7A8_9FLAO6.420e-1162.75Uncharacterized protein n=1 Tax=Formosa algae TaxI... [more]
A0A090VBS3_9FLAO6.860e-1178.38Uncharacterized protein n=1 Tax=Algibacter lectus ... [more]
A3U9R0_CROAH6.000e-1071.79Uncharacterized protein n=1 Tax=Croceibacter atlan... [more]
A0A150XIW1_ROSEK5.540e-757.14Uncharacterized protein n=1 Tax=Roseivirga ehrenbe... [more]
A0A327VT74_9BACT6.790e-757.14Uncharacterized protein n=1 Tax=Chitinophaga dingh... [more]
A3XIL6_LEEBM1.560e-564.86Uncharacterized protein n=1 Tax=Leeuwenhoekiella b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12521contigE-siliculosus-1a_F_contig12521:837..995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size159
Model size159
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927774.7779899-CDS-E-siliculosus-1a_F_contig12521:836..9951622927774.7779899-CDS-E-siliculosus-1a_F_contig12521:836..995Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12521 837..995 +
1696318674.6971993-CDS-E-siliculosus-1a_F_contig12521:836..9951696318674.6971993-CDS-E-siliculosus-1a_F_contig12521:836..995Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12521 837..995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12521.1565.1prot_E-siliculosus-1a_F_contig12521.1565.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12521 837..995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12521.1565.1

>prot_E-siliculosus-1a_F_contig12521.1565.1 ID=prot_E-siliculosus-1a_F_contig12521.1565.1|Name=mRNA_E-siliculosus-1a_F_contig12521.1565.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=53bp
FFPRSRDKTKSIMKIKNKIFAILAAPAAIPPNPKIPATTANMIKVTVQRN
IW*
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mRNA from alignment at E-siliculosus-1a_F_contig12521:837..995+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12521.1565.1 ID=mRNA_E-siliculosus-1a_F_contig12521.1565.1|Name=mRNA_E-siliculosus-1a_F_contig12521.1565.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=159bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12521:837..995+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTTTTCCTCGAAGTAGAGATAAAACAAAAAGTATAATGAAAATAAAGAA
TAAAATTTTTGCGATACTTGCCGCACCTGCAGCGATTCCTCCGAATCCAA
AAATTCCAGCAACGACTGCTAATATGATAAAAGTAACTGTCCAACGTAAC
ATATGGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12521:837..995+

>mRNA_E-siliculosus-1a_F_contig12521.1565.1 ID=mRNA_E-siliculosus-1a_F_contig12521.1565.1|Name=mRNA_E-siliculosus-1a_F_contig12521.1565.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=318bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12521:837..995+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTTTTCCTCGAAGTAGAGATAAAACAAAAAGTATAATGAAAATAAAGAA
TAAAATTTTTGCGATACTTGCCGCACCTGCAGCGATTCCTCCGAATCCAA
AAATTCCAGCAACGACTGCTAATATGATAAAAGTAACTGTCCAACGTAAC
ATATGGTAATTTTTTCCTCGAAGTAGAGATAAAACAAAAAGTATAATGAA
AATAAAGAATAAAATTTTTGCGATACTTGCCGCACCTGCAGCGATTCCTC
CGAATCCAAAAATTCCAGCAACGACTGCTAATATGATAAAAGTAACTGTC
CAACGTAACATATGGTAA
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