mRNA_E-siliculosus-1a_F_contig1251.1562.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1251.1562.1 vs. uniprot
Match: D8LU56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU56_ECTSI) HSP 1 Score: 725 bits (1871), Expect = 1.010e-262 Identity = 361/379 (95.25%), Postives = 372/379 (98.15%), Query Frame = 1
Query: 121 MKAVISALGLLAHSCFTNAAYVATIDIASCADLLTAADALSGGDIEANIVEADIACDEWTTVEVGQHKLKFVGSGVTFTSARFVVAAGAVLRADVPLVFTGDQTQTVNGGLLNVADGGKARFLDSVAMNNVGVLSVSEEAMVHGGCVYNEGLVRFEGIFSADGCKTVSSDTASVIPGNGGGLWNGPGGKVVFKEAVEMKNCGERTGLRNWSSEGLDGGAIYTDGKVSFYEDAQFTDNEADEGGAICIGVDGELKFLKRAKVTFTGNNSEGSGGHINNDGTLVLRNTGVFSDGYAGGSGGAIYAGDFSSMLFVKHVDFLDNTAGAHGGAIATSYPNIDDLPEDATYEGNSRTNADRDYECNNVYVNGDAGGGEDGYICIP 1257
MKAVISALGLLAHSCFTNA YVATIDIASCADLLTAADALSGGDIEANI+EADIACDEWTTVEVGQ+KLKFVGSG TFTSARFVVAAGAVLRADVPLV TGDQTQ VNGGLLNVADGGKARFLDSVAMN+VGVLSVSEEAMVHGGCVYNEGL+RFEG FSADGCKTVSSDTASVIPG+GGGLWNGPGGK+VFKEAVEMKNCGERTGLR+W S+GLDGGAIYTDGKVSFYEDAQFTDNEADEGGAICIGVDGELKFLK+AKVTFTGNNSEGSGGHINNDGTLVLRNTGVFSDGYAGGSGGAIYAGDFSSMLFVKHVDFLDNTAGAHGGAIATSYPNIDDLPEDATY+GNSRTNAD D+ECNNVYVNGDAGGGEDGYICIP
Sbjct: 1 MKAVISALGLLAHSCFTNAVYVATIDIASCADLLTAADALSGGDIEANIMEADIACDEWTTVEVGQNKLKFVGSGATFTSARFVVAAGAVLRADVPLVLTGDQTQAVNGGLLNVADGGKARFLDSVAMNDVGVLSVSEEAMVHGGCVYNEGLIRFEGTFSADGCKTVSSDTASVIPGDGGGLWNGPGGKIVFKEAVEMKNCGERTGLRSWRSQGLDGGAIYTDGKVSFYEDAQFTDNEADEGGAICIGVDGELKFLKKAKVTFTGNNSEGSGGHINNDGTLVLRNTGVFSDGYAGGSGGAIYAGDFSSMLFVKHVDFLDNTAGAHGGAIATSYPNIDDLPEDATYQGNSRTNADSDFECNNVYVNGDAGGGEDGYICIP 379
BLAST of mRNA_E-siliculosus-1a_F_contig1251.1562.1 vs. uniprot
Match: D7G627_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G627_ECTSI) HSP 1 Score: 465 bits (1196), Expect = 7.530e-160 Identity = 243/393 (61.83%), Postives = 289/393 (73.54%), Query Frame = 1
Query: 121 MKAVISALGLLAH-SCFTNAAYVATIDIASCADLLTAADALSGGDIEANIVEADIACDEWTTVEVGQHKLKFVGSGVTFTSARFVVAAGAVLRADVPLVFTGDQT------------QTVNGGLLNVADGGKARFLDSVAMNNVGVLSVSEEAMVHGGCVYNEGLVRFEGIFSADGCKTVSSDTASVIPGNGGGLWNGPGGKVVFKEAVEMKNC-GERTGLRNWSSEGLDGGAIYTDGKVSFYEDAQFTDNEADEGGAICIGVDGELKFLKRAKVTFTGNNSEGSGGHINNDGTLVLRNTGVFSDGYAGGSGGAIYAGDFSSMLFVKHVDFLDNTAGAHGGAIATSYPNIDDLPEDATYEGNSRTNADRDYECNNVYVNGDAGGGEDGYICIP 1257
MK+ ++ L+H + F NAAYVA +DIASCADL +AA ALSGG+IE +VE++I CD+WTTVE+ Q+KLK G TFTS RFVVA GA+LR D + FTGDQ + VNGG+LNVA G ARFLDSV M +VGV +V ++ M HGGC+YNEG VRFEG F+AD C+ S TA PGNGG LWNGP KVVFKEAVEM NC G++T N GL+GGA+YT+GK+SFYEDA FTDNE DEGGA+ IGV +KFLKR+K TF N SE GGHI N+G LV+RNT VF DG +G SGGAI AGD S M+F+KHVDF+ N+A AHGGAIAT+YPNI+ LP+DATYEGN NAD DY C +VYVNG GGEDGYIC+P
Sbjct: 1 MKSAVATAVFLSHLASFVNAAYVAQMDIASCADLQSAAGALSGGNIEGVLVESEITCDDWTTVEISQNKLKLTGQATTFTSVRFVVADGAILRVDTAVEFTGDQERRQGDGLAPAFLEAVNGGVLNVAPEGYARFLDSVKMYSVGVNTVEDDTMQHGGCIYNEGYVRFEGTFTADACRVGS--TAEKYPGNGGALWNGPDAKVVFKEAVEMTNCYGKKTEDYNGRYTGLEGGAVYTEGKISFYEDAVFTDNEGDEGGAMWIGVTAVVKFLKRSKATFARNTSENRGGHIMNEGVLVMRNTAVFEDGVSGSSGGAINAGDVSEMVFIKHVDFIGNSADAHGGAIATTYPNIEFLPQDATYEGNVLQNADYDYVCPDVYVNGSEDGGEDGYICLP 391
BLAST of mRNA_E-siliculosus-1a_F_contig1251.1562.1 vs. uniprot
Match: A0A6H5L171_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L171_9PHAE) HSP 1 Score: 357 bits (916), Expect = 5.270e-119 Identity = 181/276 (65.58%), Postives = 211/276 (76.45%), Query Frame = 1
Query: 433 QTVNGGLLNVADGGKARFLDSVAMNNVGVLSVSEEAMVHGGCVYNEGLVRFEGIFSADGCKTVSSDTASVIPGNGGGLWNGPGGKVVFKEAVEMKNC-GERTGLRNWSSEGLDGGAIYTDGKVSFYEDAQFTDNEADEGGAICIGVDGELKFLKRAKVTFTGNNSEGSGGHINNDGTLVLRNTGVFSDGYAGGSGGAIYAGDFSSMLFVKHVDFLDNTAGAHGGAIATSYPNIDDLPEDATYEGNSRTNADRDYECNNVYVNGDAGGGEDGYICIP 1257
Q VNGG+LNVA G ARFLDSV M +VGV +V ++ M HGGC+YNEG VRFEG F+AD C+ S TA PGNGG LWNGP KVVFKEAVEM NC G++T N GL+GGA+YT+GK+SFYEDA FTDNE DEGGA+ IG G +KFLKR+K TF N SE GGHI N+G LV+RNT VF DG +G SGGAI AGD S M+F+KHV+F+ N+A AHGGAIAT+YPNI+ LP+DATYEGN NAD DY C +VYVNG GGEDGYIC+P
Sbjct: 12 QAVNGGVLNVAPEGYARFLDSVKMYSVGVNTVEDDTMQHGGCIYNEGYVRFEGTFTADACRVGS--TAEKYPGNGGALWNGPDAKVVFKEAVEMTNCYGKKTEDYNGRYTGLEGGAVYTEGKISFYEDAVFTDNEGDEGGAMWIGGTGVVKFLKRSKATFARNTSENRGGHIMNEGVLVMRNTAVFEDGVSGSSGGAINAGDASEMVFIKHVNFIGNSADAHGGAIATTYPNIEFLPQDATYEGNVLQNADYDYVCPDVYVNGSEDGGEDGYICLP 285
BLAST of mRNA_E-siliculosus-1a_F_contig1251.1562.1 vs. uniprot
Match: D7FSQ1_ECTSI (Adhesin-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSQ1_ECTSI) HSP 1 Score: 357 bits (917), Expect = 1.220e-117 Identity = 204/385 (52.99%), Postives = 258/385 (67.01%), Query Frame = 1
Query: 127 AVISALGLLAHSCFTNAAYVATIDIASCADLLTAADALSG-GDIEANIVEADIACDEWTTVEVGQHKLKFVGS-GVT--FTSARFVVAAGAVLRADVPLVFTGDQTQTVNGGLLNVADGGKARFLDSVAMNNVGVLSVSEEAMVHGGCVYNEGLVRFEGIFSADGCKTVSS--DTASVIPGNGGGLWNGPGGKVVFKEAVEMKNCGERTGLRNWSSEGLDGGAIYTDGKVSFYEDAQFTDNEADEGGAICIGVDGELKFLKRAKVTFTGNNSEGSGGHINNDGTLVLRNTGVFSDGYA-GGSGGAIYAGDFSSMLFVKHVDFLDNTAGAHGGAIATSYPNIDDLPEDATYEGNSRTN-ADRDYECNNVYVNGDAGGGEDGYICIP 1257
A I A L A C A +DI++CA+L AA+A + G++ +VE +I CDEW +VE+ ++KLK G GVT F RFVV +GA+LR DVP+ FTGD+TQ V+GG+LNV +GGKARFL SV+M+ +GV +V M HGGCVYN+G VRFEG F A+GC+TVS+ + + GNG G+WNG KVVFKEAVEM CG N + G DGGAIY+DG+VSF+EDA FT+NEADEGGA+ IGV G +KFLK AK TF N+ G+GG INN G LV+RNT F+ G + GSGG I G S M+FVK+V F + HG AI Y N++ LPEDATY N N +D Y+C +VYV GD G ED Y+C+P
Sbjct: 7 AAIGAAALSAAGCM---AAPTPMDISNCAELQAAAEATATVGNVLGQLVEEEIFCDEWLSVEIPENKLKLDGDDGVTYKFDKVRFVVKSGAILRVDVPVEFTGDRTQVVHGGVLNVEEGGKARFLSSVSMDGIGVDTVDLADMKHGGCVYNQGYVRFEGEFYANGCETVSTIEEYRVAMAGNGAGIWNGKDAKVVFKEAVEMDFCGNWPWTSNGAEPGSDGGAIYSDGEVSFFEDALFTNNEADEGGALWIGVTGVVKFLKSAKATFQSNSGPGNGGTINNYGVLVMRNTASFNQGRSTDGSGGCISCGPASEMVFVKNVLFDGCQSTEHGAAIYIDYDNVEFLPEDATYTDNFIVNNSDGFYKCEDVYVVGDGSGDEDAYMCLP 388
BLAST of mRNA_E-siliculosus-1a_F_contig1251.1562.1 vs. uniprot
Match: A0A6H5L6W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6W4_9PHAE) HSP 1 Score: 147 bits (370), Expect = 7.350e-40 Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 1
Query: 205 SCADLLTAADALSGGDIEANIVEADIACDEWTTVEVGQHKLKFVGSGVTFTSARFVVAAGAVLRADVPLVFTGDQTQTV 441
SCADLLTAADALSGGDIEANIVEADIACDEWTTVEVGQ+KLKFVGSG TFTSARFVVAAGAVLRADVPLVFTGDQTQ +
Sbjct: 4 SCADLLTAADALSGGDIEANIVEADIACDEWTTVEVGQNKLKFVGSGATFTSARFVVAAGAVLRADVPLVFTGDQTQVL 82 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1251.1562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1251.1562.1 >prot_E-siliculosus-1a_F_contig1251.1562.1 ID=prot_E-siliculosus-1a_F_contig1251.1562.1|Name=mRNA_E-siliculosus-1a_F_contig1251.1562.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=429bp CHLASIRGPHQIHPSRDHSSSCRLHPGTDRHKTFGSSESTMKAVISALGLback to top mRNA from alignment at E-siliculosus-1a_F_contig1251:21923..29731- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1251.1562.1 ID=mRNA_E-siliculosus-1a_F_contig1251.1562.1|Name=mRNA_E-siliculosus-1a_F_contig1251.1562.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7809bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1251:21923..29731- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1251:21923..29731- >mRNA_E-siliculosus-1a_F_contig1251.1562.1 ID=mRNA_E-siliculosus-1a_F_contig1251.1562.1|Name=mRNA_E-siliculosus-1a_F_contig1251.1562.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2574bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1251:21923..29731- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |