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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 144 |
| Model size | 3950 |
| Exons | 2 |
| Ec32 ortholog | Ec-24_003240.1 |
| Ec32 ortholog description | Hypothetical protein |
| Hectar predicted targeting category | no signal peptide or anchor |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927773.9461374-CDS-E-siliculosus-1a_F_contig1250:17267..17411 | 1622927773.9461374-CDS-E-siliculosus-1a_F_contig1250:17267..17411 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1250 17268..17411 + |
| 1696318674.3836899-CDS-E-siliculosus-1a_F_contig1250:17267..17411 | 1696318674.3836899-CDS-E-siliculosus-1a_F_contig1250:17267..17411 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1250 17268..17411 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1250.1559.1 >prot_E-siliculosus-1a_F_contig1250.1559.1 ID=prot_E-siliculosus-1a_F_contig1250.1559.1|Name=mRNA_E-siliculosus-1a_F_contig1250.1559.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=48bp
MSWAVGELQKSGSGHVPRHMFPSKIIPAKKLVYMGLDENVSTKGVFP* back to topmRNA from alignment at E-siliculosus-1a_F_contig1250:14705..18866+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1250.1559.1 ID=mRNA_E-siliculosus-1a_F_contig1250.1559.1|Name=mRNA_E-siliculosus-1a_F_contig1250.1559.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4162bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1250:14705..18866+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCGTGGTTGGGCTTGGCTGAGCGTCACTTTTTTCGTCCATGTTTCTTCCC
TCGGCTGCCCCCCTCCTGAACGGGAGTGTGGTTGCTTCTTCTATGTCCTA
TTGATGCAGGGGTCGATGAACTGATTGGCCTTCATGTGTTGTTTTTCATG
CCGACGTCGGTGCGTACTCGGCTCCGGTTCCACCTGTCGAAAGTGGCTTG
TGATTTTGTAACCCCTAGAGGAGGGGGGGGGGGGGGGGGCATGCCAGCAT
AGGTTAATGTGGGGGGGGGGCGCCGCGAATGGGGGGAGGGGACCGGGGGG
GGGGGGGTAAAAGTAGCACTCCGGGGGCGGGGAGGTACATNNNNNNNNNN
GTTTTGTTTTTTTGTGGTGCGGGGGGGGGGGGGGGGGCGGCGGCGGGCCG
CGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGTGCATGCCAGCATAGGTTAATGTGGAGGCGGGACGCCGCGAATG
GAGAGACGGGACCGTGGCGAGGTGGATAAAAGTAGCACTCCGGGGACGAG
TAGGTACATATTTTCACTAGTGTATCCCTCCGGGATAATGAGCAGATCAA
GATATTTCAGGTAGCTGTTCGAGCGGAGACGTTTGGTGAAACAGGGGGCG
GAAATGAGCAAAAAGCGGGCAACGCCCGTGTGTTTCAGCATTCTCTGGGA
CGCCTAGACACCACCCTCTTCCGTGCCAAATGCATGGCATTAGTGTTGTT
TGGCGATAATTTTTTTTAAGTATTTTGTGCGGTATGTTTTTGCTTTCCTT
GCCTGGGGCGTCCATTCTCCCATCAGGTCTGGGCTCGTTGCGGCTAGCGT
AAGTGGTAACCAGGTGCCCCCTGCACCGATTCCCGACACCGTGTATTTAG
AGTGGGCAGCTTTCGAACACAGGGTCAAAAGAGTTGCAAGCCTAAGGGGA
GTCGTTTGGGTGGGTCTGCTCTGCACTCCAGAGCAGGCTTACTGCTGTGT
TGTTCGTGTGGTGGAAGTATCCCCCGCCGTTAAAAGCCTGCAGAGCGAAG
CAGGTGCGCTCGCGCCACCGATGCTAAATCGGTCCCGTATGCAGCACACG
TCTGCTCGTGGAAGACCAAGGTTTTCCCAATCCCGAGGGGGCTGGGGTTG
TCCAGCAGCCTACTCTAGAGTTGCCCGGAAGGGATCAGGCATGGAAGGAA
GGGGTTATCCCGCGACGAATAGGCCCGAATCGAGCGCGAACGGGCCCGAG
TCGAACGCGAGATGTTTCGCTTGCGCGAGGAGTAAAGAAAGCTCTGGGCG
AAAACAGAAGTTCGTTTGGGCGCGTTGGATACGCGAATTGCTTGCTTAAG
TGCCAGCAGCGGGAGTTGCGTAGAAGGTAGGCCAGCAAGACCTGGCAGCT
TTACAGCCGCCCGCCAGATGTTATTTTTTGTACCACAGTATTTGGTGGTG
GAGGTTCACGCCGCGGTCGAGAGGATCGTTTTTTCGATTGCCCCGCTGCA
ATACCGAAGTGTATATCTCGTTATTGTTTTGTTTTTTCGGTGCATTTGTT
TGCTGCTCATTTTGCCTTCTTTTCTCGCTGCGAAGGGTAGAAGGGGGCTG
GTCAGGGGGAATAGGCTACACGGTGAGAGTGTGTCTGTACCTTTCTGCTT
GCTCGTGCTCAGAAACGGGACGTCAACCCCGGTGCGGGGACAAGCGCCAC
GTTTGAGCTTGTTTATTGTTTGGCTTTCTCGGACGAAGGTGTCCGCTGGT
TTTCGGGGGTCCGGAGTACCGCCTCGCCGAGTTGCTTTTTCGTAGACTAC
CCCTCCTTGCCGGGCGGGTTATTTTTATCGAGCATGCTTCGCACGCTGGC
AGCCTTGAACTAACAAGTTTCTTGGGTGTTTGTGGCTTTGTCCGTTGTGG
CGGCGAAGATCTTTGTGGACGAAGAGAAGTCCCAAACCAGGTATTCAGTC
GTTTTTTGGTCGGTCGTGATTCGGTCGATCAAGGTTTATTAGCGTTCGTC
CGCGGGCGCGTTTTGTCGAGGAAGGGCAGTGGGCGTTCTTTGGTAGTTGC
TAGAAGGGGAGATGGAGGGAGACAGCCGCTGCGGTAACGACGGAGTTTGC
GCGTTAGTATTTCTCAATGTTGGTATTGTTTCGGATAGCAGCGCAGTAGC
ACGTATTATAGCGCATCGCACGGCTTCAGGCCGGGTTCACATCGCCGTGG
AGACATCATCGGTGGCCATGAGCGGCGCACCGCGTCCCGCAGAAGGCTTG
CCGTCGCTACACGCCGAGCCTCGGGGGCATCCTTTGTATTTTTCACCAGC
GCGTGAAGCGCACGACGGCGTGGTGCGCGGCCTTCTTCGGGTAGGCCTAC
GAAAGTTGAAGCGTACACACCGAGCAGAGTGTTCTACCGGCCTGTAGGAA
ATGGGGGGGGGGGGGGGGGGTAGTCGAGGACAACGGAATGGAGCTCTCAG
AGGAGGAATGAAGAGGGACGAAACAAGAAGAGATTTTACCGTCCCTCCTA
GAAGAATTACGTTCCGTCTGCATGCAGTCCCATAAATAAAGGGAAAGAAA
CAAGTAACATGTTATGAGTTGGGCCGTCGGAGAATTGCAGAAGTCAGGGT
CAGGCCATGTGCCCCGTCATATGTTTCCAAGTAAAATAATACCGGCCAAG
AAGTTGGTCTACATGGGTTTAGACGAGAACGTGAGTACGAAAGGCGTGTT
TCCATGATGATTATTGGTACACGCGGGTCGAGGCGGGCCCCCGATACATT
AAGTAGTAGACCCGTGTTCGCATGCTGGGGCAGGGGAGAGGTGTTGCAGA
GAGCAGCCAGCGGCAGCGCCCAGAGGAAGATGAACCATCTCGTTTTAGTG
GTTTTTGTTTTTTTTGGCCAGGTATGATATATAACTGGTTTGATGCTTGG
TTCGCTGGGGTGGACGTTGTTTTGTGGGGTTCGGGGGCTGAAATTGTTTT
TGTTTTTTCGTGTCATCGCTTGATGAGATTTTCTCGTGGCCTGTATGTTT
GTTCGAGAAAGGGGCTGGGGATCGAAATGGATGCAACAATGGTAATGCAT
ACTACGTGAGAGAAAAGTGAGAAGAATGCGGTGTTGGGCCTGTTAGGCCA
GAGGGACCAGTCGGGACCGAGAATTGGTCGGCTCTCGCGGTTGGTGTTGA
TGCCAAACGAAACTCTCCTCCATAATTCGGTGTGACGGCCGCGGTATTGT
TTTCTTTTCATCCTTTGCTTTTTATTGTGGCGTCTTCTTTCCGTGAGAAA
GCTGGAAAGAGACCACCAACCACCACCATATGGTGGGTGTAAGTGGTGTG
TGGGATAAATATTTTGTTTTCTTTTGTGTCTCAGGAGTATTTTTATACGG
TCGAAGGGTTGTGTGCTACTTTCAGCTGTAGTAACAGCACTTTATTACTT
CTATTTTTTATGCTGCAGCCAGCGAGAATGTGCTGCACCCCGAGTCCGCC
TTTGCGCTAGGGTTGGCCAGCGCTCTGTGGGGTCCAGCAACGGCAACAGC
AAAATAGTGGAAACGGATGCTCGTTTGGATACATCCATCCCTGGCCGTCG
ATCGTACATGCATGCATGCACTTGCAGCAAAATGAAATGTTGGGCTGGTG
AGCGTCTACTCACGGGGAATGGCTTGCGGGTAGGGTACGTGTGGTAGAGT
CGCGTTGATTCGAATGTGTTTATGCACGCGTATGCGTGCGTGCATCATTG
CTTCATTCGGTTTTTGTGGCTGTGGCATGTGTTGAGTGGCGAACGACGAA
GCAGCGCCGGTTTGAGATTCGAGGTTTTGGACCGGCAGCGCTGTTCGCAA
GTTCGAGGCTGGGCTTTGGGTTTGCAGCGACGTGCCTTGCCTAGAATTCC
ACGTATCAGTGAGTTTGTAGCATTCCCGCGATGATCATCGATCACTCGCT
TGTACGCGAGAAGGTACATTGTAGGTAGTAGCGATTGGTTGGGTGTGATT
GTTTGCGTAATGATGATAAAATAGTTTGTACAAGATATTATTGTCATTCT
CTGCACAGGAAAAAAGCCTTTCGATCTCTGCTTGGTACCTTTTACTTCCT
ACTTAGTACATATCCTCCTTCATCCGTACGGTGGTGCGTGCTGATCCACA
GCTACCTGGCGTGGACGGACGCCGGCGGCGTCCGTCCGTGGTAGCAAGAC
TCCTGAGAGGCG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1250:14705..18866+ >mRNA_E-siliculosus-1a_F_contig1250.1559.1 ID=mRNA_E-siliculosus-1a_F_contig1250.1559.1|Name=mRNA_E-siliculosus-1a_F_contig1250.1559.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=288bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1250:14705..18866+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGTTGGGCCGTCGGAGAATTGCAGAAGTCAGGGTCAGGCCATGTGCC
CCGTCATATGTTTCCAAGTAAAATAATACCGGCCAAGAAGTTGGTCTACA
TGGGTTTAGACGAGAACGTGAGTACGAAAGGCGTGTTTCCATGAATGAGT
TGGGCCGTCGGAGAATTGCAGAAGTCAGGGTCAGGCCATGTGCCCCGTCA
TATGTTTCCAAGTAAAATAATACCGGCCAAGAAGTTGGTCTACATGGGTT
TAGACGAGAACGTGAGTACGAAAGGCGTGTTTCCATGA back to top
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