mRNA_E-siliculosus-1a_F_contig125.1556.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig125.1556.1
Unique NamemRNA_E-siliculosus-1a_F_contig125.1556.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig125.1556.1 vs. uniprot
Match: D7G8W6_ECTSI (N-alpha-acetyltransferase 40 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W6_ECTSI)

HSP 1 Score: 551 bits (1420), Expect = 1.930e-189
Identity = 307/322 (95.34%), Postives = 308/322 (95.65%), Query Frame = 1 
Query:  217 MPSAKKXXXXXXXXXXXXXXXXSPAVAAAASRIDAANATLDLSAGLEAFLSIDLPAAGAVSGAAVPTPVPAEPVRLEIRSPKTLLDGDAQVMYDLLKSNMHDMYMAAGWGWNKAEKWREMEHRDSRFLIARCGAEDDSGPEAAAAAGVAGLRVAEEGVSESSAVNGAGGATDSEEAARARSRGEEERKPGGAGERIAGYCDFRFAWDQDENEDGEGVGGMEDVLYVYELQVAPWATRRGLGRRMMQAIELLANRHSMTKVMLTVFKENRQAMSFYTKKMKYGVDKDSPSNWDQPDEVYEILSKPTRQGAARTKEALRTATLL 1182
            MPSAKK   XXXXXXXXXXXX SPAVAAAASRI+AANATLDLSAGLEAFLSIDLPAA AVSGAA PTPVPAEPVRLEIRSPKTLLDGD QVMYDLLKSNMHDMYMAAGWGWNKAEKWREMEHRDSRFLIARCG EDDSGPEAAA  GVA LRVAEEGVSESSAVNGAGGATDSEEAARARSRG EERKPGGAGERIAGYCDFRFAWDQDENEDGEGVGGMEDVLYVYELQVAPWATRRGLGRRMMQAIELLANRH MTKVMLTVFKENRQAMSFYTKKMKYGVDKDSPSNWDQPDEVYEILSKPTRQGAARTKEALR ATLL
Sbjct:    1 MPSAKKQRSXXXXXXXXXXXXRSPAVAAAASRIEAANATLDLSAGLEAFLSIDLPAAAAVSGAAAPTPVPAEPVRLEIRSPKTLLDGDTQVMYDLLKSNMHDMYMAAGWGWNKAEKWREMEHRDSRFLIARCGTEDDSGPEAAAV-GVARLRVAEEGVSESSAVNGAGGATDSEEAARARSRGGEERKPGGAGERIAGYCDFRFAWDQDENEDGEGVGGMEDVLYVYELQVAPWATRRGLGRRMMQAIELLANRHGMTKVMLTVFKENRQAMSFYTKKMKYGVDKDSPSNWDQPDEVYEILSKPTRQGAARTKEALRMATLL 321
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig125.1556.1 vs. uniprot
Match: B7FVF1_PHATC (N-alpha-acetyltransferase 40 (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVF1_PHATC)

HSP 1 Score: 98.6 bits (244), Expect = 5.640e-20
Identity = 70/224 (31.25%), Postives = 113/224 (50.45%), Query Frame = 1 
Query:  466 LLDGDAQVMYDLLKSNMHDMYMAAGWGWNKAEKWREMEHRDSRFLIAR---CGAEDDSGPEAAAAAGVAGLRVAEEGVSESSAVNGAGGATDSEEAARARSRGEEERKPGGAGERIAGYCDFRFAWDQDENEDGEGVGGMEDVLYVYELQVAPWATRRGLGRRMMQAIELLANRHSMTKVMLTVFKENRQAMSFYTKKMKYGVDKDSPSNWDQPDEVYEILSKP 1128
            L + D     +L ++NM  MY+ + WG +  +K  E +HR +RF++       AED+             + +++  V+ S+                                 +A +  FRF +D  +N+D   +     VLY+YE+QVA    R+GLG+++M  +E +     M+K++LTVFK+N QAM FYT+K+ YGVD+ SPS + +  + YEILSKP
Sbjct:   12 LSEEDLDSCLNLFRANMGQMYLDSSWGLDMTKKAAEFQHRKARFVLIHQINSNAEDNHD-----------IGISDRPVTAST---------------------------------LAAFVHFRFEYD--DNDDPSTI-----VLYIYEIQVAEAYRRKGLGQKLMALMEQIGCAVQMSKILLTVFKKNTQAMQFYTEKLCYGVDESSPSKFGKFAD-YEILSKP 183
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig125.1556.1 vs. uniprot
Match: A0A7S1K199_9ALVE (N-alpha-acetyltransferase 40 n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1K199_9ALVE)

HSP 1 Score: 100 bits (249), Expect = 8.970e-20
Identity = 75/237 (31.65%), Postives = 114/237 (48.10%), Query Frame = 1 
Query:  436 VRLEIRSPKTLLDGDAQVMYDLLKSNMHDMYMAA---GWGWNKAEKWREMEHRDSRFLIARCGAEDDSGPEAAAAAGVAGLRVAEEGVSESSAVNGAGGATDSEEAARARSRGEEERKPGGAGERIAGYCDFRFAWDQDENEDGEGVGGMEDVLYVYELQVAPWATRRGLGRRMMQAIELLANRHSMTKVMLTVFKENRQAMSFYTKKMKYGVD----KDSPSNWDQPDEVYEILSK 1125
            V +E R    +  G+ Q  +DL K+NM   Y  A   G GW+   KW+E+   D+RF++AR     ++ P  A            +G     A NG    T S++               G G  I  +  +RF  + +E           +V Y++ELQV      +GLGR +MQ +EL++ +  M K+M T FK N +A+SFY  K+KY VD    +++P  +D+ +  YEILSK
Sbjct:   60 VTIEDRRASVMSRGEIQRCFDLTKANMETFYDEAQPGGKGWDDRAKWKELSEDDARFILARSVPSQEAAPSTA------------DGSDAGPATNG----TVSKD---------------GDGSDIVAFVHYRFEIELEE-----------EVCYIWELQVDNKTRSKGLGRFLMQLLELVSRKLQMAKMMCTCFKANARALSFYKDKLKYVVDHTSPEENPDEFDEEEMTYEILSK 254
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig125.1556.1 vs. uniprot
Match: A0A1V9YDV1_9STRA (N-alpha-acetyltransferase 40 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDV1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.040e-19
Identity = 51/109 (46.79%), Postives = 69/109 (63.30%), Query Frame = 1 
Query:  802 IAGYCDFRFAWDQDENEDGEGVGGMEDVLYVYELQVAPWATRRGLGRRMMQAIELLANRHSMTKVMLTVFKENRQAMSFYTKKMKYGVDKDSPSNWDQPDEVYEILSKP 1128
            + G+  FRF  D     DG       +VLYVYELQ+ P   R+GLG+R+MQ +EL+  ++ M  ++LTVFK N  A++FYT K+ Y +D+ SPS     DE YEILSKP
Sbjct:  103 VDGFLHFRFVED-----DGA------EVLYVYELQIGPSLQRKGLGKRLMQLLELIGRKYKMKWILLTVFKANTSALTFYTHKLGYDIDETSPSQHGNLDESYEILSKP 200
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig125.1556.1 vs. uniprot
Match: A0A1E7EUG6_9STRA (N-alpha-acetyltransferase 40 (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUG6_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.460e-18
Identity = 49/109 (44.95%), Postives = 72/109 (66.06%), Query Frame = 1 
Query:  796 ERIAGYCDFRFAWDQDENEDGEGVGGMEDVLYVYELQVAPWATRRGLGRRMMQAIELLANRHSMTKVMLTVFKENRQAMSFYTKKMKYGVDKDSPSNWDQPDEVYEILS 1122
            E++AG+  FRF +D++E+           VLY+YE+Q+     R G+G+R+M   E +A   SM KV+LTVFK N++AMSFYTKKM Y +D+ SP+ + +  + YEILS
Sbjct:   44 EKLAGFVHFRFEYDEEESPSCA-------VLYIYEIQIESIYRRCGIGKRLMNITERIARNESMLKVLLTVFKSNQEAMSFYTKKMGYNIDETSPTKFGESAD-YEILS 144
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig125.1556.1 vs. uniprot
Match: A0A835YQQ1_9STRA (N-alpha-acetyltransferase 40 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQQ1_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.870e-18
Identity = 70/224 (31.25%), Postives = 98/224 (43.75%), Query Frame = 1 
Query:  460 KTLLDGDAQVMYDLLKSNMHDMYMAAGWGWNKAEKWREMEHRDSRFLIARCGAE-DDSGPEAAAAAGVAGLRVAEEGVSESSAVNGAGGATDSEEAARARSRGEEERKPGGAGERIAGYCDFRFAWDQDENEDGEGVGGMEDVLYVYELQVAPWATRRGLGRRMMQAIELLANRHSMTKVMLTVFKENRQAMSFYTKKMKYGVDKDSPSNWDQPDEVYEILSKP 1128
            K L     ++++ LLKSNM DMY++AGW W+ AEK  E+    SR L+    A+ D+SG                                                       ++ G+C +RF    D       +     VLYVYELQ+A  A R+GLG+R+M   E +     M+ V+LTVFK N  A+  Y +   Y +D   PS WD+  E Y I+SKP
Sbjct:   54 KELCKETQELVFSLLKSNMEDMYISAGWAWDDAEKRNELFSPTSRLLLCTSTAQGDESG-------------------------------------------------------KLLGFCHYRFELYSD-------LKPSRPVLYVYELQLAEGARRKGLGKRLMSIAEAIGAEKRMSVVVLTVFKTNVAAIKLY-EGAGYTLDPSDPSKWDRT-ECYAIMSKP 213
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig125.1556.1 vs. uniprot
Match: A7SV95_NEMVE (N-alpha-acetyltransferase 40 n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7SV95_NEMVE)

HSP 1 Score: 95.1 bits (235), Expect = 2.590e-18
Identity = 48/109 (44.04%), Postives = 72/109 (66.06%), Query Frame = 1 
Query:  814 CDFRFAWDQDENEDGEGVGGMEDVLYVYELQVAPWATRRGLGRRMMQAIELLANRHSMTKVMLTVFKENRQAMSFYTKKMKYGVDKDSPSNWDQPDEV-YEILSKPTRQ 1137
            C+FRF  + DEN        ME+V+Y YE+Q+ P    +G+G+ +MQ +EL+ ++ SM K++LTVFKEN     F+T  +KY +D+ +PS WD  +E  YEILSKP ++
Sbjct:  110 CEFRF--ELDEN--------MEEVIYCYEIQIEPSLQHKGVGKFLMQILELIGHKCSMKKIVLTVFKENTVGYKFFTDSLKYEIDETAPSKWDPTEEFCYEILSKPLKK 208
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig125.1556.1 vs. uniprot
Match: A0A7S1ZW93_TRICV (N-alpha-acetyltransferase 40 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZW93_TRICV)

HSP 1 Score: 94.4 bits (233), Expect = 3.390e-18
Identity = 77/230 (33.48%), Postives = 109/230 (47.39%), Query Frame = 1 
Query:  436 VRLEIRSPKTLLDGDAQVMYDLLKSNMHDMYMAAGWGWNKAEKWREMEHRDSRFLIARCGAEDDSGPEAAAAAGVAGLRVAEEGVSESSAVNGAGGATDSEEAARARSRGEEERKPGGAGERIAGYCDFRFAWDQDENEDGEGVGGMEDVLYVYELQVAPWATRRGLGRRMMQAIELLANRHSMTKVMLTVFKENRQAMSFYTKKMKYGVDKDSPSNWDQPDEVYEILSK 1125
            VR+   + K+L    ++   DL ++NM +MY  + WG +  +K  E  H  +RFL+                     L   + G  E S            E     S G+ E         +  +  FRF  D D++   E       VLY+YELQV+P   RRGLG+++M  +E +A +  M KV+LTVFK N  AM+FY   M YGVD+ SPS + + D  YEILSK
Sbjct:   28 VRIRCVAGKSLAPVASKSCLDLFETNMAEMYQRSSWGLDLRKKADEFRHERARFLL---------------------LEKVDAGNMEKSV-----------ELMGESSEGKNE---------LLAFGHFRFEPDDDDHPKLE-------VLYLYELQVSPLYHRRGLGQKLMSIMEDVAKKRGMKKVVLTVFKANVAAMTFYKDGMVYGVDETSPSKFGE-DADYEILSK 208
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig125.1556.1 vs. uniprot
Match: UPI0014257A95 (N-alpha-acetyltransferase 40-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014257A95)

HSP 1 Score: 93.2 bits (230), Expect = 1.910e-17
Identity = 56/123 (45.53%), Postives = 74/123 (60.16%), Query Frame = 1 
Query:  802 IAGYCDFRFAWDQDENEDGEGVGGMEDVLYVYELQVAPWATRRGLGRRMMQAIELLANRHSMTKVMLTVFKENRQAMSFYTKKMKYGVDKDSPSNWD--QPDEV-YEILSKPTRQGAARTKEA 1161
              G+  FRF  D DE           +VLY YE+Q+     R+GLG+ MMQ +EL+AN+  M+KV+LTVFKEN+ A +FY+K +KY +D  SPS +D   PD   YEILSK T       KE+
Sbjct:  118 AVGFSHFRFDMDFDE-----------EVLYCYEIQLESKVQRKGLGKFMMQILELIANKTKMSKVVLTVFKENKVANNFYSKTLKYSIDDTSPSIFDPMNPDLYDYEILSKKTLHKKLAEKES 229
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig125.1556.1 vs. uniprot
Match: A0A2H5U0X8_RHIID (N-alpha-acetyltransferase 40 n=7 Tax=Rhizophagus TaxID=1129544 RepID=A0A2H5U0X8_RHIID)

HSP 1 Score: 91.7 bits (226), Expect = 2.580e-17
Identity = 62/214 (28.97%), Postives = 94/214 (43.93%), Query Frame = 1 
Query:  493 YDLLKSNMHDMYMAAGWGWNKAEKWREMEHRDSRFLIARCGAEDDSGPEAAAAAGVAGLRVAEEGVSESSAVNGAGGATDSEEAARARSRGEEERKPGGAGERIAGYCDFRFAWDQDENEDGEGVGGMEDVLYVYELQVAPWATRRGLGRRMMQAIELLANRHSMTKVMLTVFKENRQAMSFYTKKMKYGVDKDSPSNWDQPDEV----YEILS 1122
            +DLLKSNM ++Y  +  GWN  +K +EM  +D ++LIA                                                               E+  G+  F+F W++   +D + +    +V+Y YE+Q+A  A R+GLG  +M+ +E +     M KVMLT FK+N+ AM FY  ++ Y +D+ SPS    P E     YEILS
Sbjct:   56 FDLLKSNMENLYKGSNLGWNSKQKRQEMNDKDCKYLIASNN------------------------------------------------------------EKPIGFAMFQFTWEETMADDDKEI----EVIYCYEIQLAEEARRKGLGTFLMRTLENIGKNWKMNKVMLTTFKKNKLAMDFYINRLGYQIDEISPSEVLLPKEAKDYDYEILS 205
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig125.1556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8W6_ECTSI1.930e-18995.34N-alpha-acetyltransferase 40 n=2 Tax=Ectocarpus Ta... [more]
B7FVF1_PHATC5.640e-2031.25N-alpha-acetyltransferase 40 (Fragment) n=1 Tax=Ph... [more]
A0A7S1K199_9ALVE8.970e-2031.65N-alpha-acetyltransferase 40 n=1 Tax=Vitrella bras... [more]
A0A1V9YDV1_9STRA3.040e-1946.79N-alpha-acetyltransferase 40 n=1 Tax=Achlya hypogy... [more]
A0A1E7EUG6_9STRA1.460e-1844.95N-alpha-acetyltransferase 40 (Fragment) n=1 Tax=Fr... [more]
A0A835YQQ1_9STRA1.870e-1831.25N-alpha-acetyltransferase 40 n=1 Tax=Tribonema min... [more]
A7SV95_NEMVE2.590e-1844.04N-alpha-acetyltransferase 40 n=2 Tax=Nematostella ... [more]
A0A7S1ZW93_TRICV3.390e-1833.48N-alpha-acetyltransferase 40 n=1 Tax=Trieres chine... [more]
UPI0014257A951.910e-1745.53N-alpha-acetyltransferase 40-like n=1 Tax=Anneissi... [more]
A0A2H5U0X8_RHIID2.580e-1728.97N-alpha-acetyltransferase 40 n=7 Tax=Rhizophagus T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig125contigE-siliculosus-1a_F_contig125:65511..69730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size972
Model size2377
Exons4
Ec32 orthologEc-15_004510.1
Ec32 ortholog descriptionAcetyltransferase (GNAT) domain protein
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EC2.3.1.257
EggNOG OGsKOG2488@1,KOG2488@2759
EggNOG free text desc.H2A histone acetyltransferase activity
GOsGO:0003674,GO:0003824,GO:0004402,GO:0004596,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006474,GO:0006475,GO:0006807,GO:0006996,GO:0008080,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010485,GO:0010556,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0017196,GO:0018193,GO:0018205,GO:0018206,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0031365,GO:0031935,GO:0033043,GO:0033044,GO:0034212,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0043967,GO:0043968,GO:0043998,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0051276,GO:0051604,GO:0060255,GO:0060968,GO:0061187,GO:0061733,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:1901564,GO:1902275,GO:1903506,GO:1990189,GO:2000112,GO:2001141
KEGG Pathwayko04150,map04150
KEGG koko:K20405,ko:K20794
Preferred nameNAT4
Seed eggNOG ortholog2880.D7G8W6
Seed ortholog evalue5.6e-159
Seed ortholog score567.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig125.1556.1prot_E-siliculosus-1a_F_contig125.1556.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig125 66700..68624 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927772.7208917-UTR-E-siliculosus-1a_F_contig125:65510..666991622927772.7208917-UTR-E-siliculosus-1a_F_contig125:65510..66699Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig125 65511..66699 -
1696318674.1410456-UTR-E-siliculosus-1a_F_contig125:65510..666991696318674.1410456-UTR-E-siliculosus-1a_F_contig125:65510..66699Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig125 65511..66699 -
1622927772.7671537-UTR-E-siliculosus-1a_F_contig125:68624..687751622927772.7671537-UTR-E-siliculosus-1a_F_contig125:68624..68775Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig125 68625..68775 -
1696318674.1826427-UTR-E-siliculosus-1a_F_contig125:68624..687751696318674.1826427-UTR-E-siliculosus-1a_F_contig125:68624..68775Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig125 68625..68775 -
1622927772.779761-UTR-E-siliculosus-1a_F_contig125:69665..697301622927772.779761-UTR-E-siliculosus-1a_F_contig125:69665..69730Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig125 69666..69730 -
1696318674.1948984-UTR-E-siliculosus-1a_F_contig125:69665..697301696318674.1948984-UTR-E-siliculosus-1a_F_contig125:69665..69730Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig125 69666..69730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927772.7314787-CDS-E-siliculosus-1a_F_contig125:66699..668381622927772.7314787-CDS-E-siliculosus-1a_F_contig125:66699..66838Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig125 66700..66838 -
1696318674.154079-CDS-E-siliculosus-1a_F_contig125:66699..668381696318674.154079-CDS-E-siliculosus-1a_F_contig125:66699..66838Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig125 66700..66838 -
1622927772.742108-CDS-E-siliculosus-1a_F_contig125:67381..674671622927772.742108-CDS-E-siliculosus-1a_F_contig125:67381..67467Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig125 67382..67467 -
1696318674.162982-CDS-E-siliculosus-1a_F_contig125:67381..674671696318674.162982-CDS-E-siliculosus-1a_F_contig125:67381..67467Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig125 67382..67467 -
1622927772.751693-CDS-E-siliculosus-1a_F_contig125:67877..686241622927772.751693-CDS-E-siliculosus-1a_F_contig125:67877..68624Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig125 67878..68624 -
1696318674.1726854-CDS-E-siliculosus-1a_F_contig125:67877..686241696318674.1726854-CDS-E-siliculosus-1a_F_contig125:67877..68624Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig125 67878..68624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig125.1556.1

>prot_E-siliculosus-1a_F_contig125.1556.1 ID=prot_E-siliculosus-1a_F_contig125.1556.1|Name=mRNA_E-siliculosus-1a_F_contig125.1556.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=324bp
MPSAKKQRSKKKKKAAPAAPKRSPAVAAAASRIDAANATLDLSAGLEAFL
SIDLPAAGAVSGAAVPTPVPAEPVRLEIRSPKTLLDGDAQVMYDLLKSNM
HDMYMAAGWGWNKAEKWREMEHRDSRFLIARCGAEDDSGPEAAAAAGVAG
LRVAEEGVSESSAVNGAGGATDSEEAARARSRGEEERKPGGAGERIAGYC
DFRFAWDQDENEDGEGVGGMEDVLYVYELQVAPWATRRGLGRRMMQAIEL
LANRHSMTKVMLTVFKENRQAMSFYTKKMKYGVDKDSPSNWDQPDEVYEI
LSKPTRQGAARTKEALRTATLLS*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig125:65511..69730-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig125.1556.1 ID=mRNA_E-siliculosus-1a_F_contig125.1556.1|Name=mRNA_E-siliculosus-1a_F_contig125.1556.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4220bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig125:65511..69730- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTGTGTTGCCGGCCTCACCTTTGAGCTTCCTTTGGGTGTTGGCCAGACTC
AAAGTTACCGGTGAGGTGAGTTTCTACAAAAAATGTTTTTCAAAATTGAA
ACCCTCTGCTCCTCCGCACTGCTGCGACGGCAGTGCTTGCTATGTATGTA
AGGCTAAGGAAAGAGAGCGCGAGCCTTCATTGCATTGCGCGAAGGAGAGA
AGAGGCACATCGCCGTTTTGCATGTGTTTCTCTCTGGAATCGTGGCATAG
TAGACCGACAGTATGTCGTGCCCAAGGGCTCAACACGCACCCACACGTCC
TGGATGAGGCGTGATGGGTAAGATGCACGAGGCGAGGCCAGCCCGTGCTG
CTGTAGTGGGAGAGACAAAGGGTTGTTGGTTGTCGGCCATGCTCGGCCGA
GAAGGGAATGTGAAAGGAAAACTTGATTGATTGAGAAGGAGAGAGAGAAA
GAGAGAAGAGGTGAACGTAAAAGAGGGGGGGTGTTACGTAGATCACAGCA
GCGTCGACACTACAAAGCAAAGTTTGGTATCGGACCAAGTCCTTATTCCT
TCCCACTGAAGAAACGAAGGAACGTGGGTGTGTGGGCGTTCAGCGTGGGG
AAAAACAGGGCTGGAAAGGTGGTTCTTTGTAATCAGTAATTGGGCTTTTT
CAAGCAGGAGCGCGTGAGAGACACAGGCAAGACAGACCGGAGGGAACGGG
GTTTTAGAAGCTCAGCAAGACAGTAGATCGGCACAGCAGTCTACCAATGC
GCCTTCGTGGGAGTTGTGTACACAGTAGTTAGCGCGAGTACGTGCTATGC
GTCACACCCCTATGGTGTGAAGTGAAGTGGAGTGCTTCCCCCCGCCAAGG
TCCCCACAACATAGACGTTGCTTGCAACTGCTGCTTCTGCTGCCTGTGCC
CCCTTTGAACAACGTTACATGAGCTTCAGAATCGCCTACACCATTCAACG
CGCAGGTTGCTCTTTCTCGAGAAAGCAGCGAGAACAAAGACATCCACAAC
CAGCACCTCCCGCGACGGACTCCGGTCACCGACAGCACGAACTCCGCATC
GCCGCCACCCGCTCGCGCCAAAGGCTGCCAGTTCCAAACCCGAAGACAGA
AGAGACATGCCGAGCGCAAAGAAGCAACGATCTAAGAAGAAGAAGAAGGC
GGCGCCTGCAGCTCCCAAGCGCTCGCCGGCCGTAGCTGCCGCTGCATCCA
GGATCGACGCCGCCAACGCCACTCTTGATCTCTCTGCCGGGCTCGAAGCC
TTCCTGTCCATTGACCTCCCCGCCGCCGGTGCCGTGTCTGGCGCTGCTGT
GCCGACGCCTGTTCCCGCCGAACCTGTCCGCCTCGAGATACGGTCGCCGA
AGACCCTGCTGGACGGAGACGCACAAGTCATGTACGACCTCCTCAAGAGC
AATATGCACGACATGTACATGGCGGCCGGTTGGGGCTGGAACAAGGCAGA
GAAGTGGCGAGAGATGGAGCATCGGGACTCCCGATTTTTGATCGCTCGTT
GCGGCGCTGAAGACGACAGCGGTCCAGAGGCGGCGGCGGCGGCGGGGGTG
GCGGGGTTGAGAGTAGCAGAAGAGGGAGTTTCCGAGAGCAGCGCGGTGAA
TGGTGCGGGGGGAGCAACCGACAGTGAGGAGGCAGCAAGGGCGCGCTCAC
GGGGGGAAGAGGAGAGAAAGCCGGGGGGCGCAGGAGAACGAATCGCCGGC
TACTGCGATTTTCGTTTCGCGTGGGATCAGGACGAAAATGAGGACGGGGA
GGGAGTCGGAGGAATGGAGGACGTGCTGTACGTTTACGAGTTGCAGGTGG
CGCCTTGGGCGACGCGGAGGGGCCTGGGGCGGCGAATGATGCAGGCCATT
GAGGTGTGGTTATCGTATCAACACGGGGCGTCAAACGATGGTTCTTTCTA
CCCTCCTTGCGTTTCTTGACAACTGATTTTTGCGGTCGTGGCCTCGAAGA
GTTACCGTGCGCACGCGAGGAGGGCGCGGTAAGCGAATCATTTGTATTTC
TGTGTGGCTTCTGTATGAGGCAATCACCCCCTCCCACCTTTGTACTTGGG
GTACAACATATCAGACACACAGAAGCACCGTGGCTGTGATGTCTCTCGTT
GCAGCAAGAGCGGGTAGTGTTGCTTGTCGAACAGAGGATGCGTTGCCCAT
GGCGGAATGACTAGGACAAGCAAGACTTGAAACTCGCCACACATTCCCAG
CTCTCATGTATGATTGCATGTGTCGATTCTCTCTCTCCGCCCCCCCCCCT
GACGTATTGTCAGCTTCTAGCAAATCGCCACAGCATGACGAAGGTGATGC
TGACGGTTTTCAAGGAGAACAGGCAGGCGATGTCATTCTACACCAAGAAG
TGAGTTTCAGTTTGGTGTCGGATAAACCTGGAAGTGTGGAAGAATCATGC
AGAGCTTGGTTGATTTCGATATCAAGATGGAGCGCGACATGAACTAACTG
AAAATTCCCGTTGCCCCATGGCTTGACCAGTCGACTAATAGTTAGTCTGA
TCGTTTCAGACCGCTTAGCAGAAACAATAACGCTTGCAAGCTAATTACTG
GACCATTTTGCCACCTTACCTCTTCGGCTCGTCATGCATGCAACAATTTG
AATACATAGTTGCCCATACCCCACACTTGTGCAGTAGCTTCGCTGTTTCC
ACCTAGACGGACAACGCGTGCGGGCAAAACGTCTCCTCGTCTGATTCGGA
CCAACCCGACACGCTGAGATCATGAGGACCATTTGGCAAGGTACTACCGC
ACTCGTTGCAGTCAAGAGTCAGGTTGTTGTTAGGTTCCGGATCATTGTGG
ACGTGCTGCATTTCCACCGCCCTATGCATGTACACCATCTGTCCTACATC
GCACAACCCTGCTGCCATTTGCCCCCTTGGGTGTGTTTTCAGAATGAAAT
ACGGCGTGGACAAGGACTCTCCTTCCAACTGGGACCAGCCCGACGAGGTG
TACGAGATTCTCAGCAAGCCTACGAGACAGGGGGCGGCGAGAACGAAGGA
AGCGCTTAGAACGGCGACGCTCCTGAGCTAACGACAAAGGATCTCAGTTG
ATGTGAGAAGAGGGAATCAGTCGTCCTCGACAGAGAGACTTTTTGGGCGA
TTGTGCCCCTATATGAAGGTGATATCCGCACTGAAGGAGAGAAGTTGCAA
ACGGCCAGCACGAGCAGTAGTGCGTGGACGCAGGGGCGGTTGTTGTGGCG
TTCCCGTATTTTGGTGAAAGTTTCGCGTTTTGCTTTGTTGCGCCTGTTAT
CGCGGTGCCCCGAAGCCTGCTCTCGGTAGAGCCTCGAAGCAGAAGGAAGG
CACGTAACACAGGCCTCGTGGTTGTTTTACCACACTAGCGAAGTCCTTGC
GAATTGTGATGACATCGTAAGAATTTTCAGCGTTCATCGGGCTAAACCAG
TAATGTACAAGGATGATGTATCTTTGCAAGAGAGTATTCAATCCTCCACA
TGATGCTCTTTTTGAAATTTGATTTAGGGACAACGGGTTTTTGTACGGAA
AATGATTGGTAGGAGGTGTCCGCCAACACTCAAGAAGGCGAACCGTCCAG
ACTAGCACGCCATTTCGCGTGGAGGCTGCGGGGGTGTAAAATTCGAGAAT
AATGCAGCTTGGACACGTTTCACGGGTGGCCCTGTCCTAGTCCGGTCTTC
ACTTTCCGTTCCCTTCTTGTGCCGGCAAAATTTCATCTTTCTTGGGTGGG
TCGAGTGCTTCTACACTTCGTTTTCCAACCGCCAAGACCCTCTGGTACTG
TTAACGGCACGACGGCTGAAGCAGGCATGGCTGGGGCTGCTGTTTGTGCA
AACGATTGGGATTCGAGGATTGGGACTGGTCCAGGCTTGTTGTATGCGAT
CAACGGGGACATAGCCCCGCAGGCGTGGACCACAACAGAATTGCTGTACG
CACGAATCGAGGCGTTTCGTGAGGGTGAGAAGGAGCTCCCTTGTGGGTGT
GGCCGCACCATTGCATGGAAACACTGCTGCACGGGGAGATGACTGTCAAC
GTCATCAACGTGGTGCCCGTTGCAATGCAGGAGATCTCGAAGAATCAGCT
TCGATGGGCGACGACGAGTGTCATGTATCCAAGAATTAATGCAGACTTGG
CTTGGTTGCATTCTGTTCCACGTGAAAAAAGTCACATATGGAAAGTGCCG
CTCGTGATTGTTGGCCAGACTCCCCGTGACGCGCATGTCAAGCGTTTGTC
TTCTTTGCAATGAAATACGC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig125:65511..69730-

>mRNA_E-siliculosus-1a_F_contig125.1556.1 ID=mRNA_E-siliculosus-1a_F_contig125.1556.1|Name=mRNA_E-siliculosus-1a_F_contig125.1556.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1944bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig125:65511..69730- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGAGCGCAAAGAAGCAACGATCTAAGAAGAAGAAGAAGGCGGCGCC
TGCAGCTCCCAAGCGCTCGCCGGCCGTAGCTGCCGCTGCATCCAGGATCG
ACGCCGCCAACGCCACTCTTGATCTCTCTGCCGGGCTCGAAGCCTTCCTG
TCCATTGACCTCCCCGCCGCCGGTGCCGTGTCTGGCGCTGCTGTGCCGAC
GCCTGTTCCCGCCGAACCTGTCCGCCTCGAGATACGGTCGCCGAAGACCC
TGCTGGACGGAGACGCACAAGTCATGTACGACCTCCTCAAGAGCAATATG
CACGACATGTACATGGCGGCCGGTTGGGGCTGGAACAAGGCAGAGAAGTG
GCGAGAGATGGAGCATCGGGACTCCCGATTTTTGATCGCTCGTTGCGGCG
CTGAAGACGACAGCGGTCCAGAGGCGGCGGCGGCGGCGGGGGTGGCGGGG
TTGAGAGTAGCAGAAGAGGGAGTTTCCGAGAGCAGCGCGGTGAATGGTGC
GGGGGGAGCAACCGACAGTGAGGAGGCAGCAAGGGCGCGCTCACGGGGGG
AAGAGGAGAGAAAGCCGGGGGGCGCAGGAGAACGAATCGCCGGCTACTGC
GATTTTCGTTTCGCGTGGGATCAGGACGAAAATGAGGACGGGGAGGGAGT
CGGAGGAATGGAGGACGTGCTGTACGTTTACGAGTTGCAGGTGGCGCCTT
GGGCGACGCGGAGGGGCCTGGGGCGGCGAATGATGCAGGCCATTGAGATG
CCGAGCGCAAAGAAGCAACGATCTAAGAAGAAGAAGAAGGCGGCGCCTGC
AGCTCCCAAGCGCTCGCCGGCCGTAGCTGCCGCTGCATCCAGGATCGACG
CCGCCAACGCCACTCTTGATCTCTCTGCCGGGCTCGAAGCCTTCCTGTCC
ATTGACCTCCCCGCCGCCGGTGCCGTGTCTGGCGCTGCTGTGCCGACGCC
TGTTCCCGCCGAACCTGTCCGCCTCGAGATACGGTCGCCGAAGACCCTGC
TGGACGGAGACGCACAAGTCATGTACGACCTCCTCAAGAGCAATATGCAC
GACATGTACATGGCGGCCGGTTGGGGCTGGAACAAGGCAGAGAAGTGGCG
AGAGATGGAGCATCGGGACTCCCGATTTTTGATCGCTCGTTGCGGCGCTG
AAGACGACAGCGGTCCAGAGGCGGCGGCGGCGGCGGGGGTGGCGGGGTTG
AGAGTAGCAGAAGAGGGAGTTTCCGAGAGCAGCGCGGTGAATGGTGCGGG
GGGAGCAACCGACAGTGAGGAGGCAGCAAGGGCGCGCTCACGGGGGGAAG
AGGAGAGAAAGCCGGGGGGCGCAGGAGAACGAATCGCCGGCTACTGCGAT
TTTCGTTTCGCGTGGGATCAGGACGAAAATGAGGACGGGGAGGGAGTCGG
AGGAATGGAGGACGTGCTGTACGTTTACGAGTTGCAGGTGGCGCCTTGGG
CGACGCGGAGGGGCCTGGGGCGGCGAATGATGCAGGCCATTGAGCTTCTA
GCAAATCGCCACAGCATGACGAAGGTGATGCTGACGGTTTTCAAGGAGAA
CAGGCAGGCGATGTCATTCTACACCAAGAACTTCTAGCAAATCGCCACAG
CATGACGAAGGTGATGCTGACGGTTTTCAAGGAGAACAGGCAGGCGATGT
CATTCTACACCAAGAAAATGAAATACGGCGTGGACAAGGACTCTCCTTCC
AACTGGGACCAGCCCGACGAGGTGTACGAGATTCTCAGCAAGCCTACGAG
ACAGGGGGCGGCGAGAACGAAGGAAGCGCTTAGAACGGCGACGCTCCTGA
GCTAAAATGAAATACGGCGTGGACAAGGACTCTCCTTCCAACTGGGACCA
GCCCGACGAGGTGTACGAGATTCTCAGCAAGCCTACGAGACAGGGGGCGG
CGAGAACGAAGGAAGCGCTTAGAACGGCGACGCTCCTGAGCTAA
back to top