mRNA_E-siliculosus-1a_F_contig125.1551.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig125.1551.1
Unique NamemRNA_E-siliculosus-1a_F_contig125.1551.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig125.1551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig125contigE-siliculosus-1a_F_contig125:2582..3163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size249
Model size252
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927771.6152296-CDS-E-siliculosus-1a_F_contig125:2581..28071622927771.6152296-CDS-E-siliculosus-1a_F_contig125:2581..2807Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig125 2582..2807 +
1696318673.6934767-CDS-E-siliculosus-1a_F_contig125:2581..28071696318673.6934767-CDS-E-siliculosus-1a_F_contig125:2581..2807Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig125 2582..2807 +
1622927771.6294403-CDS-E-siliculosus-1a_F_contig125:3139..31621622927771.6294403-CDS-E-siliculosus-1a_F_contig125:3139..3162Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig125 3140..3162 +
1696318673.7010286-CDS-E-siliculosus-1a_F_contig125:3139..31621696318673.7010286-CDS-E-siliculosus-1a_F_contig125:3139..3162Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig125 3140..3162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig125.1551.1prot_E-siliculosus-1a_F_contig125.1551.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig125 2582..3162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig125.1551.1

>prot_E-siliculosus-1a_F_contig125.1551.1 ID=prot_E-siliculosus-1a_F_contig125.1551.1|Name=mRNA_E-siliculosus-1a_F_contig125.1551.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=83bp
GYRLIRTIEKKWDKPCSTDGMIAICAAAAADSVLARKELEAGIRPKARGP
TPIVCGFIVGLSEMGYSNGHLLCLRGEQNDFAK
back to top

mRNA from alignment at E-siliculosus-1a_F_contig125:2582..3163+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig125.1551.1 ID=mRNA_E-siliculosus-1a_F_contig125.1551.1|Name=mRNA_E-siliculosus-1a_F_contig125.1551.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=582bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig125:2582..3163+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGATACCGTCTCATCCGTACCATTGAGAAAAAGTGGGACAAGCCATGCAG
CACCGACGGCATGATTGCTATCTGCGCGGCGGCGGCGGCGGATTCTGTTT
TGGCGCGGAAGGAGCTCGAAGCGGGTATCCGGCCCAAGGCCAGGGGACCG
ACGCCTATTGTCTGCGGGTTTATCGTGGGCTTGTCGGAAATGGGCTACAG
CAACGGGCATCTATTGTGCCTGCGAGGTGACGTTTCTTGGCTTCGCCCAA
GGTGTCGTCTTGGTCTACGGCGTTTCAATAGAGCCCCAAAGTGGGTCCGT
TCTTGAATCTTTCTCGGGTGCATACTTGCGCGCACCTACGTAGCTGACCC
GAGAATCTGACGAGTGACCGTGATTGTCGCTGGCACAGTTGGTTTTGCCG
AGCAGCCGCCGACAGTCAAATAGGCTTTTTCTCCAAAAGGATCACACCAA
ACCACCGTTTGAAGGCATAGAACATAAACGAGTAAACACTTCCAATGGGT
TAACCCTCGCCGTCGCTATCATTATCCCACTTGTTCGTGTTAACGAATTG
AACCGTAGGCGAGCAGAACGACTTTGCAAAGG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig125:2582..3163+

>mRNA_E-siliculosus-1a_F_contig125.1551.1 ID=mRNA_E-siliculosus-1a_F_contig125.1551.1|Name=mRNA_E-siliculosus-1a_F_contig125.1551.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig125:2582..3163+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGATACCGTCTCATCCGTACCATTGAGAAAAAGTGGGACAAGCCATGCAG
CACCGACGGCATGATTGCTATCTGCGCGGCGGCGGCGGCGGATTCTGTTT
TGGCGCGGAAGGAGCTCGAAGCGGGTATCCGGCCCAAGGCCAGGGGACCG
ACGCCTATTGTCTGCGGGTTTATCGTGGGCTTGTCGGAAATGGGCTACAG
CAACGGGCATCTATTGTGCCTGCGAGGGATACCGTCTCATCCGTACCATT
GAGAAAAAGTGGGACAAGCCATGCAGCACCGACGGCATGATTGCTATCTG
CGCGGCGGCGGCGGCGGATTCTGTTTTGGCGCGGAAGGAGCTCGAAGCGG
GTATCCGGCCCAAGGCCAGGGGACCGACGCCTATTGTCTGCGGGTTTATC
GTGGGCTTGTCGGAAATGGGCTACAGCAACGGGCATCTATTGTGCCTGCG
AGGCGAGCAGAACGACTTTGCAAAGGCGAGCAGAACGACTTTGCAAAG
back to top