mRNA_E-siliculosus-1a_F_contig1249.1547.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_F_contig1249.1547.1
Unique Name	mRNA_E-siliculosus-1a_F_contig1249.1547.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig1249.1547.1 vs. uniprot
Match: D8LHL4_ECTSI (DUF3342 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHL4_ECTSI)

HSP 1 Score: 592 bits (1525), Expect = 1.350e-203
Identity = 394/435 (90.57%), Postives = 398/435 (91.49%), Query Frame = 1

Query:   25 VGKLASRGEGXXXXXXXXAIADSLSIRGTGHATGSFRSPIHGSSPS--YPMAVGSRSTKSSSYNRPVHHRGSGGXXXXXXXXXXXDRQRNNSASSADGIVGAHKAKSGXXXXXXXXXXRGKLRPWTAGQRQRLQPSTSPRLTASRXXXXXXXXXXCGGSEPGSDEVDGXXXXXXXXXXXXXXXXXXXGDIVKIHVCDEGRGITRDFPCERRLLLREMKYFQSYLVGASSPYDEIDILVHCDVRIFEWLFQYIHSSDGKTAGRSNRSSGSHDNDAEHDDKHGDTSKPTRDTSGRSGDNSSEXXXXXXXXXXXDSIGSRLDMAGPPPLEVPLAVSILISSDFLQMQRLVAECLGFVGEHLTEIVKLPIDLSCLSDKMVLQLAKIVTLDQLAVAKDRKDKLLSRVHKKRIEIDFRDRSPHSDNAIHCCRHCAGLFSEK 1323
            VGKLASRGEGXXXXXXXXAIADSLSIRGTGHATGSFRSPIHGSSPS  YPMAVGSRSTKSSSY+RPV+HRGSGG   XXXXXXX DRQRNNSASSAD I GAHKAK  XXXXXXXXXX GKLRPWTAG RQR QPSTSPRLT SRXXXXXXXXXX GGSEPGSDEVDGXXXXXXXXXXXXXXXXXXXGDIVKIHVCDEGRGITRDFPCERRLLLREMKYFQSYLVGASSPYDEIDILVHCDVRIFEWLFQYIHSSDGKT  RSNRS GSHDNDAEHDD HGDTSK TR            XXXXXXXXXXX    SR DMAGPPPLEVPLAVSILISSDFLQMQRLVAECLGFVGEHLTEIVKLPIDLSCL+DKMVLQLAKIVTLDQLAVAKDRKDKLLSRVHKKRIEIDFRDRSPHSDNAIHCCR+CAGLFSEK
Sbjct:   78 VGKLASRGEGXXXXXXXXAIADSLSIRGTGHATGSFRSPIHGSSPSPSYPMAVGSRSTKSSSYSRPVYHRGSGGSGSXXXXXXXADRQRNNSASSADEI-GAHKAKGXXXXXXXXXXXXGKLRPWTAGHRQRQQPSTSPRLTGSRXXXXXXXXXXXGGSEPGSDEVDGXXXXXXXXXXXXXXXXXXXGDIVKIHVCDEGRGITRDFPCERRLLLREMKYFQSYLVGASSPYDEIDILVHCDVRIFEWLFQYIHSSDGKTTSRSNRSRGSHDNDAEHDDNHGDTSKRTRXXXXXXXXXXXXXXXXXXXXXXXXXXXSRPDMAGPPPLEVPLAVSILISSDFLQMQRLVAECLGFVGEHLTEIVKLPIDLSCLNDKMVLQLAKIVTLDQLAVAKDRKDKLLSRVHKKRIEIDFRDRSPHSDNAIHCCRYCAGLFSEK 511

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BLAST of mRNA_E-siliculosus-1a_F_contig1249.1547.1 vs. uniprot
Match: A0A6H5K1Y3_9PHAE (DUF3342 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Y3_9PHAE)

HSP 1 Score: 313 bits (803), Expect = 1.010e-99
Identity = 217/329 (65.96%), Postives = 221/329 (67.17%), Query Frame = 1

Query:  379 KLRPWTAGQRQRLQPSTSPRLTASRXXXXXXXXXXC--GGSEPGSDEVDGXXXXXXXXXXXXXXXXXXXGDIVKIHVCDEGRGITRDFPCERRLLLREMKYFQSYLVGASSPYDEIDILVHCDVRIFEWLFQYIHSSDGKTAGRSNRSSGSHDNDAEHDDKHGDTSKPTRDTSGRSGDNSSEXXXXXXXXXXXDSIGSRLDMAGPPPLEV-----------PLAVSILISSDFLQMQRLVAECLGFVGEHLTEIVKLPIDLSCLSDKMVLQLAKIVTLDQLAVAKDRKDKLLSRVHKKRIEIDFRDRSPHSDNAIHCCRHCAGLFSEKA 1326
            KLRPWTA QRQR QP  SPRLT  R  XXXXXXXX   GGSE GSD+VDG  XXXX             GDIVKIH                                ASSPYDEIDILVHCDVRIFEWLFQYIHSSDGKTAGRSNRSS SHDNDAEH                        XXXXXXXXXXX           PPPLEV           PLAVSILISSDFLQMQRLVAECLGFVGEHLTEIVKLPIDLSCLSDKMVLQLAKI+TLDQLAVAKDRKDKLLSRVHKKRIEIDF DRSPHSD+A+HCCRHC GLFSEKA
Sbjct:  132 KLRPWTACQRQRQQPPASPRLTGPRSGXXXXXXXXXXXGGSERGSDKVDGGGXXXXGKRGRTTAASEGGGDIVKIH--------------------------------ASSPYDEIDILVHCDVRIFEWLFQYIHSSDGKTAGRSNRSSDSHDNDAEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPLEVGDVCSAALPSVPLAVSILISSDFLQMQRLVAECLGFVGEHLTEIVKLPIDLSCLSDKMVLQLAKIMTLDQLAVAKDRKDKLLSRVHKKRIEIDFCDRSPHSDSAVHCCRHCGGLFSEKA 428

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BLAST of mRNA_E-siliculosus-1a_F_contig1249.1547.1 vs. uniprot
Match: A0A835YQX4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQX4_9STRA)

HSP 1 Score: 212 bits (540), Expect = 1.080e-57
Identity = 126/247 (51.01%), Postives = 162/247 (65.59%), Query Frame = 1

Query:  583 DIVKIHVCDEGRGITRDFPCERRLLLREMKYFQSYLVGASSPYDEIDILVHCDVRIFEWLFQYIHSSDGKTAGRSNRSSGSHDNDAEHDDKHGDTSKPTRDTSGRSGDNSSEXXXXXXXXXXXDSIGSRLDMAGPPPLEVPLAVSILISSDFLQMQRLVAECLGFVGEHLTEIVKLPIDLSCLSDKMVLQLAKIVTLDQLAVAKDRKDKLLSRVHKKRIEIDFRDRSPHSDNAIHCCRHCAGLFSEK 1323
            D V IHVCD+GR +TRDF C R LLL+EM+YFQ YL  ++ P+DE+DILVHCDVRIFEWLF+YIH+   +TA  + RS                               +     XXXXXXXX           PP LEV   VS+LISSDFL+M  LVAECL FV  + +E+V+LPIDL+CL+D MV  +A+++TL +LA A+DR+DKLLSRV KKR+E+++RDRS   D A+ CCRHCA L++E+
Sbjct:  106 DAVTIHVCDDGRSVTRDFQCNRALLLQEMQYFQGYLSASAGPFDEVDILVHCDVRIFEWLFRYIHAPR-QTADATPRSXX--------------XXXXXXXXXXTCSAAAPYQAGXXXXXXXXXXXXXXXXXXXPPQLEVANVVSVLISSDFLKMAALVAECLAFVARNFSEVVRLPIDLACLTDAMVGAVARLMTLRELAAARDRRDKLLSRVFKKRLEVEYRDRS--GDRAVRCCRHCAALYTER 335

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BLAST of mRNA_E-siliculosus-1a_F_contig1249.1547.1 vs. uniprot
Match: A0A7S1XVF4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVF4_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.990e-40
Identity = 88/249 (35.34%), Postives = 133/249 (53.41%), Query Frame = 1

Query:  580 GDIVKIHVCDEGRGITRDFPCERRLLLREMKYFQSYLVGASSPYDEIDILVHCDVRIFEWLFQYIHSSDGKTAGRSNRSSGSHDNDAEHDDKHGDTSKPTRDTSGRSGDNSSEXXXXXXXXXXXDSIGSRLDMAGPPPLEVPLAVSILISSDFLQMQRLVAECLGFVGEHLTEIVKLPIDLSCLSDKMVLQLAKIVTLDQLAVAKDRKDKLLSRVHKKRIEIDFRDRSPHSDNAIHCCRHCAGLFSEKA 1326
            G+++ IHVCDE RG+ RDF C R LLL  M+YF+S+ +  +S  D++DI VHCDV IFEWL +Y+HS +                                                                  PP L+    +SILISSDFLQM  L   CL ++  HL+E++++PID+ C+ D+++++LA +   + LA  +D++DKLLS+++KKRIE+DFR+R     ++I  CR+C   F+ K+
Sbjct:  310 GELIVIHVCDEDRGLKRDFHCRRELLLEHMRYFRSF-IDENSSQDDVDISVHCDVHIFEWLMEYVHSVNS-----------------------------------------------------------------PPKLDPSCVISILISSDFLQMDPLTELCLKYITAHLSEVIRVPIDMGCIKDELLVRLAALTEPEVLAYTRDKRDKLLSKLYKKRIEMDFRERQKGVPHSISACRYCLQPFATKS 492

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BLAST of mRNA_E-siliculosus-1a_F_contig1249.1547.1 vs. uniprot
Match: A0A7S2SHR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHR3_9STRA)

HSP 1 Score: 160 bits (406), Expect = 3.040e-39
Identity = 99/252 (39.29%), Postives = 129/252 (51.19%), Query Frame = 1

Query:  583 DIVKIHVCDEGRGITRDFPCERRLLLREMKYFQSYL--VGAS-SPYDEIDILVHCDVRIFEWLFQYIHSSDGKTAGRSNRSSGSHDNDAEHDDKHGDTSKPTRDTSGRSGDNSSEXXXXXXXXXXXDSIGSRLDMAGPPPLEVPLAVSILISSDFLQMQRLVAECLGFVGEHLTEIVKLPIDLSCLSDKMVLQLAKIVTLDQLAVAKDRKDKLLSRVHKKRIEIDFRD-----RSPHSDNAIHCCRHCAGLF 1314
            D + IHVCDE +G+ RDF C+R  LL EMKYF SYL  VG   S  D+IDI VHCDV IFEWL +YI                                                                  D   PP LE    VSILISSDFL+M++LV  CL ++   L EIVK+P+DLSC+S+K+V +L+++V    L   KD+KDKL+S+++K+R+EIDFR+     +     + I CCR C  LF
Sbjct:  165 DTIVIHVCDEAKGVNRDFQCKRAKLLSEMKYFSSYLQLVGDDPSKEDDIDISVHCDVHIFEWLMRYIE-----------------------------------------------------------------DPLSPPKLEPATVVSILISSDFLEMEKLVTHCLRYMSRRLPEIVKMPLDLSCISEKLVQRLSELVDASLLVGLKDKKDKLMSKLYKRRLEIDFRNPPLDSKKRQGYSKICCCRWCGRLF 351

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BLAST of mRNA_E-siliculosus-1a_F_contig1249.1547.1 vs. uniprot
Match: A0A7S3ZMG3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMG3_9STRA)

HSP 1 Score: 159 bits (402), Expect = 4.960e-39
Identity = 94/244 (38.52%), Postives = 128/244 (52.46%), Query Frame = 1

Query:  583 DIVKIHVCDEGRGITRDFPCERRLLLREMKYFQSYLVGASSPYDEIDILVHCDVRIFEWLFQYIHSSDGKTAGRSNRSSGSHDNDAEHDDKHGDTSKPTRDTSGRSGDNSSEXXXXXXXXXXXDSIGSRLDMAGPPPLEVPLAVSILISSDFLQMQRLVAECLGFVGEHLTEIVKLPIDLSCLSDKMVLQLAKIVTLDQLAVAKDRKDKLLSRVHKKRIEIDFRDRSPHSDNAIHCCRHCAGLF 1314
            D++ IHVCDE R ++RDF C+R +LLREM+YF+SYL G     ++IDI VHCDV IFEWL Q+IHS                               P +                                  PPPL+    VSILISS+FL+M  LV  CL F+  H+ EI+++PIDL+C+SD +V +LA +   + L    D KDKLL +++K+R+E+DFR  S  +   I  CRHC  L+
Sbjct:  119 DLIVIHVCDEARKVSRDFACDRVVLLREMRYFRSYL-GGGDACEDIDISVHCDVHIFEWLVQWIHS-------------------------------PNK----------------------------------PPPLDASSVVSILISSEFLEMANLVEHCLKFMAAHVGEILEMPIDLACVSDALVQRLAALCPAEVLCDLTDAKDKLLPKLYKRRLELDFRHSSKANKRDILKCRHCDRLY 296

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BLAST of mRNA_E-siliculosus-1a_F_contig1249.1547.1 vs. uniprot
Match: F0YN17_AURAN (DUF3342 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN17_AURAN)

HSP 1 Score: 152 bits (383), Expect = 2.150e-36
Identity = 94/226 (41.59%), Postives = 121/226 (53.54%), Query Frame = 1

Query:  583 DIVKIHVCDEGRGITRDFPCERRLLLREMKYFQSYLVGASSPYDEIDILVHCDVRIFEWLFQYIHSSDGKTAGRSNRSSGSHDNDAEHDDKHGDTSKPTRDTSGRSGDNSSEXXXXXXXXXXXDSIGSRLDMAGPPPLEVPLAVSILISSDFLQMQRLVAECLGFVGEHLTEIVKLPIDLSCLSDKMVLQLAKIVTLDQLAVAKDRKDKLLSRVHKKRIEIDFRDR 1260
            +++ IHVCDE R I RDF C+R +LL EMKYFQSYL G S  +D+IDI VHCDV IFEWL Q+IHS                               P R                                  PPPL+    VSILISS+FL+M+RLV  CL     H+      PIDL+C+S+K+VL+LA++ T + LA   D+KDKLL +++K+R+EIDFR R
Sbjct:   18 ELIIIHVCDEARQINRDFACDRSVLLEEMKYFQSYLGGDSGSFDDIDISVHCDVHIFEWLVQWIHS-------------------------------PLR----------------------------------PPPLDSSSVVSILISSEFLEMERLVEHCL----RHM------PIDLACVSEKLVLRLAELCTAEVLASLSDKKDKLLPKLYKRRLEIDFRHR 168

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BLAST of mRNA_E-siliculosus-1a_F_contig1249.1547.1 vs. uniprot
Match: A0A7S4HC00_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4HC00_GUITH)

HSP 1 Score: 147 bits (370), Expect = 1.270e-34
Identity = 88/247 (35.63%), Postives = 127/247 (51.42%), Query Frame = 1

Query:  583 DIVKIHVCDEGRGITRDFPCERRLLLREMKYFQSYLVGASSPYDEIDILVHCDVRIFEWLFQYIHSSDGKTAGRSNRSSGSHDNDAEHDDKHGDTSKPTRDTSGRSGDNSSEXXXXXXXXXXXDSIGSRLDMAGPPPLEVPLAVSILISSDFLQMQRLVAECLGFVGEHLTEIVKLPIDLSCLSDKMVLQLAKIVTLDQLAVAKDRKDKLLSRVHKKRIEIDFRDRSPHSDNAIHCCRHCAGLFSEK 1323
            +++ IHVCDE RGI +DF C + +LL EM YFQSYL G+ +  D+IDI VHCD++IF+WL +Y++  +                                                                  PPPL+    +SILISS FL+MQ+LV  CL FV  +  EI+K+PIDL+CL+ +++ +L+  +T ++L    DR+DKLLSR++ K+IE  F+      DN I  C  C  LF+ K
Sbjct:  206 ELIVIHVCDENRGINKDFTCRKDVLLSEMAYFQSYLNGSEAS-DDIDISVHCDIQIFQWLIKYLNEPNS-----------------------------------------------------------------PPPLDTTNVISILISSQFLKMQKLVELCLQFVCRNANEILKMPIDLNCLNQELLTKLSAYLTPEELEDLNDRRDKLLSRLYMKKIEALFQS----DDNMISRCAFCGKLFALK 382

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BLAST of mRNA_E-siliculosus-1a_F_contig1249.1547.1 vs. uniprot
Match: A0A7S3Z7E0_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z7E0_9EUKA)

HSP 1 Score: 146 bits (369), Expect = 1.620e-34
Identity = 87/245 (35.51%), Postives = 129/245 (52.65%), Query Frame = 1

Query:  583 DIVKIHVCDEGRGITRDFPCERRLLLREMKYFQSYLVGASSPYDEIDILVHCDVRIFEWLFQYIHSSDGKTAGRSNRSSGSHDNDAEHDDKHGDTSKPTRDTSGRSGDNSSEXXXXXXXXXXXDSIGSRLDMAGPPPLEVPLAVSILISSDFLQMQRLVAECLGFVGEHLTEIVKLPIDLSCLSDKMVLQLAKIVTLDQLAVAKDRKDKLLSRVHKKRIEIDFRDRSPHSDNAIHCCRHCAGLFS 1317
            D++ IHVCDE RG+ RDF C R++L   MKYF+SYL   S+ +D+IDI VHCDV IF+WL  YI+                                PT++                                  P L++   +SILISSDFLQM  LVA CL F+ +H+ +I++ P+DLSCL+ ++++QL+++ T +QL + KD KDKL S++  +++E    D      N ++ C+HC  LF+
Sbjct:  178 DMIVIHVCDEARGVNRDFHCSRKVLTSGMKYFRSYL-SESASFDDIDISVHCDVNIFQWLMHYINH-------------------------------PTKN----------------------------------PGLDLRNVISILISSDFLQMDSLVAACLRFLRDHIGKILRSPVDLSCLNSRLIIQLSELFTPEQLDMLKDTKDKLSSKLFMRKLEKLLHD----PRNQLYQCQHCGKLFT 352

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BLAST of mRNA_E-siliculosus-1a_F_contig1249.1547.1 vs. uniprot
Match: A0A1R2CHG3_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CHG3_9CILI)

HSP 1 Score: 143 bits (361), Expect = 3.430e-34
Identity = 87/243 (35.80%), Postives = 122/243 (50.21%), Query Frame = 1

Query:  595 IHVCDEGRGITRDFPCERRLLLREMKYFQSYLVGASSPYDEIDILVHCDVRIFEWLFQYIHSSDGKTAGRSNRSSGSHDNDAEHDDKHGDTSKPTRDTSGRSGDNSSEXXXXXXXXXXXDSIGSRLDMAGPPPLEVPLAVSILISSDFLQMQRLVAECLGFVGEHLTEIVKLPIDLSCLSDKMVLQLAKIVTLDQLAVAKDRKDKLLSRVHKKRIEIDFRDRSPHSDNAIHCCRHCAGLFSEK 1323
            IHVCDEG+ I RDF C R +L+ +MKYF+S+L    +  ++++I VHCDV IFEWL QY+ + D                                                                   P LE+P  +SILISSDFLQM  LV +CL F  ++L E+VKLPID+SCLS  ++ QLAK +  + L   KDRKDKLLS+++ K++E    D     +N +  C +C  L++ +
Sbjct:   84 IHVCDEGKKINRDFKCPRSVLISKMKYFESHLQSCQTA-EDLEISVHCDVEIFEWLMQYMLAKDK------------------------------------------------------------------PQLEMPKVISILISSDFLQMNDLVKQCLEFTAKNLEEVVKLPIDMSCLSQNLLKQLAKYINPELLDEVKDRKDKLLSKIYMKKLEELLED----ENNTLSRCVYCNKLYTAR 255

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig1249.1547.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig1249.1547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LHL4_ECTSI	1.350e-203	90.57	DUF3342 domain-containing protein n=1 Tax=Ectocarp...	[more]
A0A6H5K1Y3_9PHAE	1.010e-99	65.96	DUF3342 domain-containing protein n=1 Tax=Ectocarp...	[more]
A0A835YQX4_9STRA	1.080e-57	51.01	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S1XVF4_9STRA	2.990e-40	35.34	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A7S2SHR3_9STRA	3.040e-39	39.29	Hypothetical protein (Fragment) n=1 Tax=Rhizochrom...	[more]
A0A7S3ZMG3_9STRA	4.960e-39	38.52	Hypothetical protein n=2 Tax=Pelagomonas calceolat...	[more]
F0YN17_AURAN	2.150e-36	41.59	DUF3342 domain-containing protein n=1 Tax=Aureococ...	[more]
A0A7S4HC00_GUITH	1.270e-34	35.63	Hypothetical protein n=1 Tax=Guillardia theta TaxI...	[more]
A0A7S3Z7E0_9EUKA	1.620e-34	35.51	Hypothetical protein n=1 Tax=Lotharella globosa Ta...	[more]
A0A1R2CHG3_9CILI	3.430e-34	35.80	Uncharacterized protein n=1 Tax=Stentor coeruleus ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig1249	contig	E-siliculosus-1a_F_contig1249:15356..21937 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Properties


Property Name	Value
Start	1
Stop	0
Cds size	1326
Model size	1327
Exons	8
Hectar predicted targeting category	other localisation
Best eggNOG OG	NA\|NA\|NA
Best tax level	Eukaryota
COG Functional cat.	S
EggNOG OGs	28J1Y@1,2QRE4@2759
EggNOG free text desc.	Domain of unknown function (DUF3342)
Preferred name	KIAA1841
Seed eggNOG ortholog	2880.D8LHL4
Seed ortholog evalue	9.7e-170
Seed ortholog score	603.2
Taxonomic scope	Eukaryota

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig1249.1547.1	prot_E-siliculosus-1a_F_contig1249.1547.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	polypeptide	E-siliculosus-1a_F_contig1249 15356..21937 +

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig1249:15356..21937+
coding sequence from alignment at E-siliculosus-1a_F_contig1249:15356..21937+

protein sequence of mRNA_E-siliculosus-1a_F_contig1249.1547.1

>prot_E-siliculosus-1a_F_contig1249.1547.1 ID=prot_E-siliculosus-1a_F_contig1249.1547.1|Name=mRNA_E-siliculosus-1a_F_contig1249.1547.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=442bp
MSRIHSLGVGKLASRGEGQGQAAGAGAIADSLSIRGTGHATGSFRSPIHG
SSPSYPMAVGSRSTKSSSYNRPVHHRGSGGSGSYGGSGGSGDRQRNNSAS
SADGIVGAHKAKSGGGGGSGGGPGRGKLRPWTAGQRQRLQPSTSPRLTAS
RSGSGSGSGSGCGGSEPGSDEVDGGGGGGGGEGGRTTAASEGGGDIVKIH
VCDEGRGITRDFPCERRLLLREMKYFQSYLVGASSPYDEIDILVHCDVRI
FEWLFQYIHSSDGKTAGRSNRSSGSHDNDAEHDDKHGDTSKPTRDTSGRS
GDNSSEGGAASGGGGGGDSIGSRLDMAGPPPLEVPLAVSILISSDFLQMQ
RLVAECLGFVGEHLTEIVKLPIDLSCLSDKMVLQLAKIVTLDQLAVAKDR
KDKLLSRVHKKRIEIDFRDRSPHSDNAIHCCRHCAGLFSEKA

mRNA from alignment at E-siliculosus-1a_F_contig1249:15356..21937+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig1249.1547.1 ID=mRNA_E-siliculosus-1a_F_contig1249.1547.1|Name=mRNA_E-siliculosus-1a_F_contig1249.1547.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6582bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1249:15356..21937+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCCGGATCCATTCGTTGGGGTGAGAAATATGACCTAAGACGGTTTC
AATGTTAAGGTCGTGTGTCGCGAGCACTGGTGCTTGTACCTGCCGAGAAT
TGGTTTGTAAGCACAGGCCTCGGAAAACCGTTTCCGCTTTCAAGCTAACT
ACTTGTATGCCGTCTCCGTGCGTAGCCCAATCTCTCTCTCTCCAACTCTC
TCTCGTCTTTCTCTTTCCCACACAAAGTCACGGCTCTTTGTATCTTTGTA
TACAACCACTCAGCCATTACCTTGGGGTACGAGATACGTCGTCAGCATGG
TATCGCGGTGTGTCGGCGTTTGTGCTCCTAAAACACAACTGGTCGGGGTG
TCGGGGGACAAGTTACCGACCTGCTCGCCACGACCAGCGTCGGACTGATG
CACGTGGACAACTGGTAGGTACCCGATAAATGCTGAAGCATTCTTGTATA
CGCCATATATGTGTGTCACACGAATAGCACCGCTGTTGGGCAGCTTTCTT
TATTGCTGTGGGAGATCAAAGATCCAACCGCCGTCGGCGAACCATGCCAG
ACCAAAGCCTGTGAGACGCCAATGCGTCTCTAACAGCGGAAATTTGCGAT
AGGATACGCGGCAGGCCAACAAGTCTGCACAGAGCTGATGCTGCAACAGT
GATCCCCTGCCATACCCGTACCCAGCCACGACCAGCGGCAATACGTTAGA
TATCACCCCCCCTATACTAAATAGGAATGGCGACGCTGAAATGGCGGCGT
TGGAACCACCTCGCCGAGAGCTTCGCGAGAAAGTTTCGTTTGATGTACTC
ATCTTAGTCTTCGTCGTGGAGTAATCGGTAGGGGGTGTGGTATCCTACGC
CACCTCGGCATTTCCCTCTGGAGTAATGTATTCAAGTCAATAGAAGCTAA
CATATGCCCATGTAAAGCTTGTAAGCACAGCACACAGCACCGTCTTGTGG
ACGCGTCTGCTCTGTACTGCATATTCCAGCGCCATCGACGCCACTGAACG
CACTCAGAAATAACCTGATGCGCCTGTGTGCAAGAAGCAACACACGCGTC
GCTTTTGGGGTCCGTCTCTCTCTCTACAGGGATCCCCACTTTCACCTGAA
TCGATTTGTCCGCGTCGAAAATTACAAGTCTGCTGGCTTGTCCGGCCTGG
GCTCAATCTACCGTCGGACAGAACCTTCGCGTTCGTTTTTGTGCTAGTCC
TCGCGCCGCAGCCACTCCGTGCACACCGTATAGCCCCGACCCTCGTAATC
GAAGAGGTCTTGCTTGGCATGACTTGCTGTGGCCAACGTAATTTTGCTTG
CACGACGGCCCTAGAATCATGCATAGGCCGAGTCCTTCACTCTACCCCGC
GCAGTCAGGGTGGACGACGGTCACCCTTGGCAACACGGGGCGGAGCTGAT
CCTCATCGTGTCTTCGGGCTGATGAGCATGTCTCGCCGATTTGTTTTTTC
TACCCCTTGCTGCTCCTGCTCGTGCTGTGCCATCCACCCCCACGGTTTCG
CTCCCTCTCCCCCGCCCCCCCCGATCTGCTGCTGTCCCATGCACACCTTA
TGCCGGTGGTGGGCGCATCACATCAACGTTTGGCGCTACGTGCACGCGAT
CGGGATGGCGCGGTTGGGGTGGGATTGGCAACTCCAATGTATCGGTGCGC
ATAGGGTGGGCAAGCTGGCGAGCCGCGGCGAAGGCCAGGGCCAGGCGGCG
GGGGCAGGAGCCATAGCCGACTCCTTGTCCATTCGGGGAACGGGGCACGC
GACCGGAAGGTACGTCCTCAGTGTGTACTAATAGTCTGTTGCGGTGACAA
GAGTTCTGTGGGGCTTCGTGGTGACCTGCGCACGTCCCTCTGGCAGGGCA
ACACAGCGTGTGCGGTACCGCGGAGCCAGTAGAAGACTCAGGGAAGAGGG
AACCGTGCTAAGCAGAAGCCTAGATGACGGGCTAGGTATGCTTGGCAAGC
AGGGTTGGGCGGTGTGCGTCCGGCCGTGTGCCTCCTCTTTCGAGTTTTGT
CACGCACGTGCACAAGGTGATGGGGCAATGGACGAAGAATCGCACGATTC
TTTCGGCCTACGAGAGATATCGTTCGGTGCTGAAGCGCAATCGCATCTGT
TTTGGAACTTGCTCTGCTGGTGGCAATGGCAGCGGCAGGAGTAGTAGCAG
CAGCGGCGGCGGCGGGATTGGTGTACGTGGAGCAACCTGCTTGATGAGGG
GAAAACCTTGACGGCAGGCTGGAGGAATCTGGTTGGGGACGGGGTCACAG
GTCGTAGCAAGGCCTTGGGAAAGTCACTTGTTCGGCGCTTCCTATTCCAG
TTGTGGGCGCAAGCGTTGATGGCAGCACTACTCACGCGCGCACGACTTTC
CCCGCACACCGTATCGATTTGGATGGTGCTTCCATGTGTGCTGTGGCTTC
CGTACCAACGGTGCCTGCTAAGCTTGAGACGGAGTCGCTCGTGTTTCGTC
GGCCCGTTCGCCCTACGCCCCTTTGGTGTGTTGCCTGAAACAATAACCTC
GACGCCGTCCCGCCGGCTCCACAATCGGTGAACGCTATTCTGCTATCTAG
TGGTTCACCTCCGCTACTACTACTCCTGTACCGAAGTGTTTTTTTTCTGT
TCCCTGCTTGCCCGCTTTGGCTAATTGGTTTACCGTCCAGCTTCCGGAGC
CCGATTCATGGCTCCAGCCCCAGCTACCCGATGGCTGTCGGTAGCAGAAG
CACCAAGAGCAGCAGCTACAACCGGCCCGTGCACCACCGGGGATCCGGCG
GCAGTGGCAGCTATGGCGGTAGCGGCGGTAGTGGCGATCGACAGCGTAAC
AACAGCGCCAGTAGCGCTGACGGAATCGGTGTCCCCGGCAGCAACCGGAT
AAGGACCGCGAGTTCGTCAACCGACCCTCAGACTAGGGAAGCGGGGTTTG
GCCGCAACGGCAGCGGCAGCGGTAACGGCAGAGGCGAGAGAGATGGCGGT
GGCGGAGTCGGGGCTCACAAAGCCAAGAGCGGAGGAGGTGGCGGGAGCGG
CGGGGGGCCGGGGCGAGGAAAGCTTCGGCCGTGGACCGCAGGCCAGCGCC
AGCGCCTGCAGCCGTCCACCTCGCCGAGGCTCACCGCATCACGATCAGGA
TCGGGATCGGGATCTGGGTCCGGGTGTGGTGGAAGCGAGCCTGGGAGCGA
CGAGGTTGATGGCGGCGGCGGCGGCGGCGGCGGTGAAGGGGGTAGGACAA
CGGCAGCGAGCGAAGGCGGCGGCGATATCGTGAAGATCCATGTCTGTGAT
GAGGGGCGTGGCATAACGAGAGGTTGGTTACGGTACTGTTCTGTGCCGAC
GGTGGGCGGTTGGGAATGGTTGTTCCACTGGGGTTTCGAGGAACCAGCAA
TAAAGATAAGAGTGACATGACCCTCGGCCATCCGTGCCAGGCGCATTTAT
CAACAACGACGGACCTGCTGCCGTTGTTTCATGACGAACGGGCTGCGCAT
GTCGTCGACGCTGTCTTTATTCTGCGTTTGAATTAGAAGGGTCTTCATCG
CCACCAACAGAAATCCGTCTACACCGTTACCGAACCAGCTCAGGCGTAAG
ACGTCTTAGACAATATGATCGAGCGCCCTAACAAGGACGTGTGCACTAGA
CATTTTCCACGACTCGGCCGAGGTCAAGTCAGACCTGTGAGGGGTGTGTG
TGTTGGTGTGTATGGTGCTGTGACGTGCTTCGCTTGGCTGCAAGAGCCTC
GTTGGGCACTTGCACACGTCCTCTGCTGTGGGGCCCCCTGTCGAATTTCG
GCGCTGTTTTGGCGCGCCTTTTGGGCACCTTGGCCGTGCCCACTTGCCGT
ACTCTCGGTCGCCTGCCCCGCCGCTCGCGACGCGCTGAGTACTCGTCCCC
TGTTCCTGCCTTGACTCCCTTCCGTTTCGATCTGTCTTGTCTATTTCTTG
TGGGCGTGGTTTCTGCTGGTCTGCGGCTGGCATCTACTACTTTGCTGCTA
AACAACTCGCAGATTTTCCGTGCGAGAGGCGGCTTCTGCTACGAGAGATG
AAGTACTTCCAATCCTACCTCGTCGGAGTGAGTTGTCGTATCCCACCACA
CATGATTGAAACATTTGCCGCTTTTACACAAGTAGGAACTGTCGACTTGG
TAGCGGAAGGGGACGATTCTGCTCGGTACGGTTGCAGTCGGTCGGTGGTC
AAAGGTGTCACCGGTAAGCTAGAATCGTGCTACGGGGATGCACCTTTCTC
CCCGTAACCGTCCGTGACCCCATGCGGAGTTGGCCTCTCGTGTGGAAAAC
CAGATGTTCGTTTTCTATCCCTGCGAGCTGTGGTAAGGGGCCGCGAGAAA
TGTAGACAAATCTGGGAATGCTTGCTTCCGCCGCATATGATGTCGGTTGT
TGTGTTTGTTTGCACGGAAGTGGTTGTGCTGCCCAAGGTTAGCCGTTGGA
TGGAGCTCACTTGCCGCACACCTGACGATACCTTTTGCCGGTGGTGCTAC
GCTACCTTCTCTACGCTAGGCGAGAGTCTTCGGCGAAACGGCCCCATATT
CCGTGTGACGGCTTTGTGTGGACCTGAGGGTGTAGACTAAGGGCTGCAAA
CCCCAGCCTTGCATTACTATGACCCACGTTCCCAGCTGCCGGCCCGCCCT
TGTCCTTCCTCCGCCTGCCTCCGTCCTTTCCTGATGAATATAGGCGTCCA
GTCCATACGACGAGATAGACATCCTGGTTCATTGCGATGTGCGAATATTC
GAGTGGCTCTTCCAATATATTCACAGCAGTGACGGGAAGACAGCCGGCCG
AAGCAACAGGAGCAGCGGCAGCCACGACAACGATGCCGAACACGATGACA
AACACGGCGATACGAGTAAGCCGACAAGGGATACTAGCGGCAGAAGTGGC
GACAACAGCAGTGAAGGTGGAGCGGCAAGCGGTGGCGGCGGGGGTGGCGA
TAGCATCGGGTCGAGGCTTGACATGGCTGGGCCTCCTCCTCTGGAGGTGG
GCGATATTTTTTCTGCCGCGTTACCGTCTGGTTTCCGCGGAACTGCACAC
CTGATATGACGGTACAAGTACTATTTTTTCGAAGATTTGCTCATCCTGCG
GAATGCACGGCCATGTTCGTACCGGGTTTTGTTTATGCCGCCCTTTGGAA
TCGCAGCGCTGCTGGTGAGGCGTGCCCCCCCCCCGCCCCCCGACCTTTCT
TCTGGGCATCTCGTACACTGTTGGTCCATTTGCTACAACCAGCCGCGGAC
ATTTCTCGCGTCTCCTGGGAAGGATTTTCCAACGGTTGATCGCTCCAGAC
ATCGCGTGTATTGAAACGAGCACGAGGGTTATAGCGGAAACGGGAAGGGT
TTGCGCCCAAGCGCGTAGGCAATACAACAGAAGGTTGGTTTGTAGTGACG
CATGATCATGCAAGGAGTCGGACGGCATTGAAGGACTTGGGGGGTTGCGG
GCTGACCCCTCCCACGCTTAGATTGTCCGCAAACCCGTTTGGAAATCCTG
GTGAGGCCTTTCCTTGTTCATGTCTAGGTCTAGGGGCAAGGCACACCGGA
CCTGCATAGACTTCGTTCCCGCTGGCCAATGAATGTGCTGATGACCTCTC
TCCCGAACGTCATGGCGGTGTATACATGAAATTGGTGTAAACCGAAATAT
GTTTTCCCGCATGAGCACCACCTGCGGGTGACTAAGCGTTGTCCACCGTG
AATGCTGTACGCCGTCCATGGGTTCATCGCAGCCTACGGGGCCGCTCATG
GAGACTTCCTTCCGGAAACCAAATCATGAAATGTTCTGTTGTGCTTGGTT
GGCTGTCTTGCACCTGCTGCAGGTGCCGCTAGCGGTGTCGATCCTCATCT
CGTCGGATTTCCTGCAGATGCAGCGGCTCGTGGCCGAGTGCCTGGGGTTC
GTCGGGGAGCACCTGACGGAGATTGTGAAGCTGCCGATCGACTTGTCTTG
TCTCAGCGACAAGATGGTGCTGCAGCTCGCAAAGGTACATACCTATCTTT
TGGTGCGGGCTGTGCGGCCATGCGTGGACACATGCGCATGATGCAGTTTG
TGCGCTACCAAGCGTGTTTGGTGTGCTCGGATTTCACCGGGTTCTCCCTC
CATTGAACCGATTTGTGATCATATCAAACTCGCACGACACACGTCTTGCT
GCCGTCCGCTGCGTGTGATATTTGGGAATCTGGGATTATGTTCATGGTTC
TGGCACTGTTTCCTTGAATCATCTTGCCATCACTCTCGGTCCTCTCTCAT
TCGCTTGCTAAGGTACTGTTGGTATGCGCCACAAGCGAATTTATGCCGTA
CCATACCATACCATACCATACCATACAGTAATATACCGTACCGCACCGTA
CCCGGCGCAGCCCCGCACAAATCACCGCACCTGCACCGCACCGCATCGCG
TCGTAACATACCGTAAACGATTCCTTTGCTTTGCGCGTGTGCTCGCTGTA
TTTGTTTGTGCGTTAAGATTGTGACCCTGGATCAGCTGGCCGTGGCGAAG
GACCGGAAGGACAAGCTGCTCAGTCGCGTGCACAAGAAACGCATCGAGAT
CGACTTCCGCGACCGCTCCCCTCACAGCGACAACGCCATCCACTGTTGCC
GGCACTGCGCCGGGCTCTTCTCGGAGAAGGCA

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1249:15356..21937+

>mRNA_E-siliculosus-1a_F_contig1249.1547.1 ID=mRNA_E-siliculosus-1a_F_contig1249.1547.1|Name=mRNA_E-siliculosus-1a_F_contig1249.1547.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2652bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1249:15356..21937+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCCGGATCCATTCGTTGGGATGAGCCGGATCCATTCGTTGGGGGTG
GGCAAGCTGGCGAGCCGCGGCGAAGGCCAGGGCCAGGCGGCGGGGGCAGG
AGCCATAGCCGACTCCTTGTCCATTCGGGGAACGGGGCACGCGACCGGAA
GGGTGGGCAAGCTGGCGAGCCGCGGCGAAGGCCAGGGCCAGGCGGCGGGG
GCAGGAGCCATAGCCGACTCCTTGTCCATTCGGGGAACGGGGCACGCGAC
CGGAAGCTTCCGGAGCCCGATTCATGGCTCCAGCCCCAGCTACCCGATGG
CTGTCGGTAGCAGAAGCACCAAGAGCAGCAGCTACAACCGGCCCGTGCAC
CACCGGGGATCCGGCGGCAGTGGCAGCTATGGCGGTAGCGGCGGTAGTGG
CGATCGACAGCGTAACAACAGCGCCAGTAGCGCTGACGGAATCGCTTCCG
GAGCCCGATTCATGGCTCCAGCCCCAGCTACCCGATGGCTGTCGGTAGCA
GAAGCACCAAGAGCAGCAGCTACAACCGGCCCGTGCACCACCGGGGATCC
GGCGGCAGTGGCAGCTATGGCGGTAGCGGCGGTAGTGGCGATCGACAGCG
TAACAACAGCGCCAGTAGCGCTGACGGAATCGTCGGGGCTCACAAAGCCA
AGAGCGGAGGAGGTGGCGGGAGCGGCGGGGGGCCGGGGCGAGGAAAGCTT
CGGCCGTGGACCGCAGGCCAGCGCCAGCGCCTGCAGCCGTCCACCTCGCC
GAGGCTCACCGCATCACGATCAGGATCGGGATCGGGATCTGGGTCCGGGT
GTGGTGGAAGCGAGCCTGGGAGCGACGAGGTTGATGGCGGCGGCGGCGGC
GGCGGCGGTGAAGGGGGTAGGACAACGGCAGCGAGCGAAGGCGGCGGCGA
TATCGTGAAGATCCATGTCTGTGATGAGGGGCGTGGCATAACGAGAGTCG
GGGCTCACAAAGCCAAGAGCGGAGGAGGTGGCGGGAGCGGCGGGGGGCCG
GGGCGAGGAAAGCTTCGGCCGTGGACCGCAGGCCAGCGCCAGCGCCTGCA
GCCGTCCACCTCGCCGAGGCTCACCGCATCACGATCAGGATCGGGATCGG
GATCTGGGTCCGGGTGTGGTGGAAGCGAGCCTGGGAGCGACGAGGTTGAT
GGCGGCGGCGGCGGCGGCGGCGGTGAAGGGGGTAGGACAACGGCAGCGAG
CGAAGGCGGCGGCGATATCGTGAAGATCCATGTCTGTGATGAGGGGCGTG
GCATAACGAGAGATTTTCCGTGCGAGAGGCGGCTTCTGCTACGAGAGATG
AAGTACTTCCAATCCTACCTCGTCGGAATTTTCCGTGCGAGAGGCGGCTT
CTGCTACGAGAGATGAAGTACTTCCAATCCTACCTCGTCGGAGCGTCCAG
TCCATACGACGAGATAGACATCCTGGTTCATTGCGATGTGCGAATATTCG
AGTGGCTCTTCCAATATATTCACAGCAGTGACGGGAAGACAGCCGGCCGA
AGCAACAGGAGCAGCGGCAGCCACGACAACGATGCCGAACACGATGACAA
ACACGGCGATACGAGTAAGCCGACAAGGGATACTAGCGGCAGAAGTGGCG
ACAACAGCAGTGAAGGTGGAGCGGCAAGCGGTGGCGGCGGGGGTGGCGAT
AGCATCGGGTCGAGGCTTGACATGGCTGGGCCTCCTCCTCTGGAGGCGTC
CAGTCCATACGACGAGATAGACATCCTGGTTCATTGCGATGTGCGAATAT
TCGAGTGGCTCTTCCAATATATTCACAGCAGTGACGGGAAGACAGCCGGC
CGAAGCAACAGGAGCAGCGGCAGCCACGACAACGATGCCGAACACGATGA
CAAACACGGCGATACGAGTAAGCCGACAAGGGATACTAGCGGCAGAAGTG
GCGACAACAGCAGTGAAGGTGGAGCGGCAAGCGGTGGCGGCGGGGGTGGC
GATAGCATCGGGTCGAGGCTTGACATGGCTGGGCCTCCTCCTCTGGAGGT
GCCGCTAGCGGTGTCGATCCTCATCTCGTCGGATTTCCTGCAGATGCAGC
GGCTCGTGGCCGAGTGCCTGGGGTTCGTCGGGGAGCACCTGACGGAGATT
GTGAAGCTGCCGATCGACTTGTCTTGTCTCAGCGACAAGATGGTGCTGCA
GCTCGCAAAGGTGCCGCTAGCGGTGTCGATCCTCATCTCGTCGGATTTCC
TGCAGATGCAGCGGCTCGTGGCCGAGTGCCTGGGGTTCGTCGGGGAGCAC
CTGACGGAGATTGTGAAGCTGCCGATCGACTTGTCTTGTCTCAGCGACAA
GATGGTGCTGCAGCTCGCAAAGATTGTGACCCTGGATCAGCTGGCCGTGG
CGAAGGACCGGAAGGACAAGCTGCTCAGTCGCGTGCACAAGAAACGCATC
GAGATCGACTTCCGCGACCGCTCCCCTCACAGCGACAACGCCATCCACTG
TTGCCGGCACTGCGCCGGGCTCTTCTCGGAGAAGGCAATTGTGACCCTGG
ATCAGCTGGCCGTGGCGAAGGACCGGAAGGACAAGCTGCTCAGTCGCGTG
CACAAGAAACGCATCGAGATCGACTTCCGCGACCGCTCCCCTCACAGCGA
CAACGCCATCCACTGTTGCCGGCACTGCGCCGGGCTCTTCTCGGAGAAGG
CA