mRNA_E-siliculosus-1a_F_contig1249.1546.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1249.1546.1
Unique NamemRNA_E-siliculosus-1a_F_contig1249.1546.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Match: A0A6H5KI28_9PHAE (EngB-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KI28_9PHAE)

HSP 1 Score: 484 bits (1246), Expect = 1.300e-169
Identity = 242/246 (98.37%), Postives = 242/246 (98.37%), Query Frame = 2
Query:  101 MRSSAAFRRLRGQLSVATSSPWVWVATGVDPASAIHPPSRKRGSPLRGEYVSPASLNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVHHPATLPIVHCISAHKGQGMGEFQNTLYGVSD 838
            MRSSAAFRRLRGQLSVATSSPWVWVATGVDPASAIHPP RKRG  LRGEYVSPAS NHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVHHPATLPIVHCISAHKGQGMGEFQNTLYGVSD
Sbjct:    1 MRSSAAFRRLRGQLSVATSSPWVWVATGVDPASAIHPPPRKRGLSLRGEYVSPASFNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVHHPATLPIVHCISAHKGQGMGEFQNTLYGVSD 246          
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Match: A0A835YYM3_9STRA (YihA2, YihA/EngB-like GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYM3_9STRA)

HSP 1 Score: 206 bits (524), Expect = 2.250e-60
Identity = 108/238 (45.38%), Postives = 146/238 (61.34%), Query Frame = 2
Query:  152 TSSPWVWVATGVDPASAIH--PPSRKRGS-PLRGEYVSPASLNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALR-----EGGAESPQA--FLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVHHPATLPIVHCISAHKGQGMGEFQNTLYGVS 835
            T SPWVW   G+D  SA+H   P   RG   ++  +  P     +LP AG PEVAF GRSN GKSTLVG L+ N KLVRASK PGCT+TVNYF L      + G+E  +A  ++VDLPGYGFA+   + V+ W  AV  ++  R  ++LRRTFVL+DGRHG++  DE M++ L    V   +VLTK D+ +   +   +EG  + A  H A  P+VH +SA  G G+ +  +T+Y V+
Sbjct:    3 TKSPWVWTMKGMDADSAVHRTDPDIARGCRAMQAGFFPPNLFKFDLPKAGVPEVAFCGRSNVGKSTLVGTLINNTKLVRASKEPGCTRTVNYFGLTAPTRIKKGSEVDRAAVYMVDLPGYGFAKAPVQEVQAWTAAVEGFIVNRDCALLRRTFVLIDGRHGVKQHDEDMMTLLDDHGVSYQIVLTKADQLTKRDIAVVVEGVMRAAARHAACYPVVHVVSARDGHGVLQLLDTIYYVT 240          
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Match: A0A482SLS6_9ARCH (Probable GTP-binding protein EngB n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SLS6_9ARCH)

HSP 1 Score: 170 bits (430), Expect = 3.270e-46
Identity = 90/206 (43.69%), Postives = 127/206 (61.65%), Query Frame = 2
Query:  206 HPPSRKRGSPLRGEYVSPASLNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESPQA-FLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVH--HPATLPIVHCISAHKGQGMGEFQ 814
            H    K+   L   Y+ P+  NH+LP+AG PEVAF+GRSN GKS+LV  LLG   L+R SK PGCT T+NY+AL +G A    A +L+D+PGYGFA+ +K+  + W + V SYL  R   +LRR FVL+D R G+Q  D +M+  L+   +   VVLTK D  S  ++ + L   F +     + + LP+VH +SA KG G+ + +
Sbjct:   61 HKSDAKKIFSLNPTYIPPSYFNHQLPSAGRPEVAFVGRSNVGKSSLVEALLGTKGLLRISKEPGCTTTLNYYALAKGSALDDHACYLIDMPGYGFAKIAKQQQKKWLEIVNSYLMNRDQLLLRRVFVLIDSRRGVQMQDVEMMEMLNHAHIPYQVVLTKKDLVSDKEIKEKLFELFCVISRKKNNSCLPLVHVVSALKGLGLEDLR 266          
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Match: A0A7S3GRN4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GRN4_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.880e-44
Identity = 92/231 (39.83%), Postives = 131/231 (56.71%), Query Frame = 2
Query:  146 VATSSPWVWVATGVDPASAIHP--PSRKRGSPLRGEYVSPASLNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFAL-REGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQL--AVHHPATLPIVHCISAHKGQGMGEFQNTL 823
            V T++  ++  T +DP   +    P+ K    +   Y+ P+ LN+ LPT G PE AF+GRSN GKS+L+  L+GN KLV  SK PGCT+++NY+ L +E   +   A+ VDLPGYGFAR+SK   + W   +  Y+  R  SVLRR FVLVD R G+   D  M+  L+   +   +V TKVD  S  +L  SL  AF +  +    A LP +  +S     G+  F+ T+
Sbjct:   37 VQTTTSSIYTTTELDPQYDLTKWGPAAKTLFSMHPSYIHPSELNYGLPTNGVPEFAFVGRSNVGKSSLIDALMGNRKLVNVSKEPGCTRSINYYGLSKEKTGKDYSAYFVDLPGYGFARKSKEEQQKWTNMIHQYVSSRDQSVLRRVFVLVDSRRGINNHDATMMDTLNKTFIPYQIVFTKVDLTSKQELYTSLGQAFSVINSSMGGACLPFIPTLSTVDKTGLDHFKLTM 267          
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Match: A0A1G7WQA0_9PROT (Probable GTP-binding protein EngB n=1 Tax=Roseospirillum parvum TaxID=83401 RepID=A0A1G7WQA0_9PROT)

HSP 1 Score: 158 bits (399), Expect = 2.340e-42
Identity = 86/192 (44.79%), Postives = 111/192 (57.81%), Query Frame = 2
Query:  248 YVSPASLNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVHHPATLPIVHCISAHKGQGMGEFQNTL 823
            +V  A+ N +LP AG PEVAFIGRSN GKS+L+  L G+  L R S  PG T+ +N+F L      + +  LVDLPGYG+A+  K+ V  WN  + +YL+GR+   LRRT VL+D RHGL+  D  M+  L    V    VLTK DK  P  L   L+   Q    HPA  P +   SA KG G+ E + TL
Sbjct:   29 FVRGATKNADLPPAGPPEVAFIGRSNVGKSSLINALTGHNGLARTSVTPGRTQQINFFDL------AGRLTLVDLPGYGYAKAPKKLVESWNGLIRNYLKGRAP--LRRTLVLIDARHGLKDSDHAMMDLLDKAAVNYQAVLTKADKIGPTSLATRLKDTAQQLARHPAAHPEIAATSAEKGTGIAELRATL 212          
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Match: A0A6N6VR93_9HYPH (Probable GTP-binding protein EngB n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VR93_9HYPH)

HSP 1 Score: 156 bits (394), Expect = 3.500e-41
Identity = 84/187 (44.92%), Postives = 113/187 (60.43%), Query Frame = 2
Query:  278 LPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVHHPATLPIVHCISAHKGQGMGEFQNTLYGVSD 838
            LP  G PE+AF GRSN GKS+LV  L G   L R S  PG T+ +N+FAL + G  +P   LVDLPGYG+ARE+K  V  W + V  YL GR+S  LRR  VL+D RHGL+ +D + +  L +  V   VVLTK+DK  P+++   LE   +    H A  P V   S+ KG+G+ E +  + G++D
Sbjct:   62 LPPMGGPEIAFAGRSNVGKSSLVNALTGRSTLARTSNTPGRTQQLNFFALGQPG--NPALILVDLPGYGYARETKATVAAWTRLVMDYLRGRTS--LRRVIVLIDARHGLKENDHETMKLLDTAAVSYQVVLTKIDKLKPSEVAPRLEEVREGIRRHVAAHPTVIATSSVKGEGIAELRAEIAGLAD 244          
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Match: A0A0F2KYA2_9PROT (Probable GTP-binding protein EngB n=1 Tax=Azospirillum thiophilum TaxID=528244 RepID=A0A0F2KYA2_9PROT)

HSP 1 Score: 154 bits (388), Expect = 1.200e-40
Identity = 85/194 (43.81%), Postives = 119/194 (61.34%), Query Frame = 2
Query:  245 EYVSPASLNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVH-HPATLPIVHCISAHKGQGMGEFQNTL 823
            ++V  A+  ++LP A  PEVAF GRSN GKS+LV  L G   L R S  PG T+ +N+F L +      +  LVD+PGYG+A+ESK  V  WN  V  +L GR +  LRR  VL+D RHGL+P+D+++++ L    V  +VVLTK DK  PA+L   +  A +L +  HPA  P +H  S+ KG G+ E + +L
Sbjct:   35 DFVWGANALNQLPEADLPEVAFAGRSNVGKSSLVNALTGRKTLARTSNTPGRTQQLNFFNLGD------RLKLVDMPGYGYAKESKEKVEAWNDMVRRFLRGRVT--LRRALVLIDARHGLKPNDDEIMAMLDRTAVPYVVVLTKADKVKPAEL-DKVRKATELGLKKHPAAFPDIHVTSSEKGTGIAELRASL 219          
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Match: A0A0P0EPD7_AZOBR (Probable GTP-binding protein EngB n=11 Tax=Azospirillum TaxID=191 RepID=A0A0P0EPD7_AZOBR)

HSP 1 Score: 152 bits (385), Expect = 2.700e-40
Identity = 83/193 (43.01%), Postives = 112/193 (58.03%), Query Frame = 2
Query:  245 EYVSPASLNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVHHPATLPIVHCISAHKGQGMGEFQNTL 823
            +++  A    +LP A  PEVAF GRSN GKS+LV  L G   L R S  PG T+ +N+F L        +  LVD+PGYG+A+ESK  +  WN  V  +L GR +  LRR  VLVD RHGL+P+DE++++ L    V  +VVLTK DK    +L +  +        HPA  P +H  SA KGQG+ E + +L
Sbjct:   29 DFIWGAQTAEQLPEADLPEVAFAGRSNVGKSSLVNALTGRKTLARTSNTPGRTQQLNFFNLGN------RLKLVDMPGYGYAKESKEKIEIWNDMVRRFLRGRVT--LRRALVLVDSRHGLKPNDEEIMTMLDQAAVPYVVVLTKSDKVRSQELAEVSKRTVAAIKKHPAAFPEIHATSAEKGQGIAELRASL 213          
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Match: A0A1I7NU75_9HYPH (Probable GTP-binding protein EngB n=4 Tax=Hyphomicrobium TaxID=81 RepID=A0A1I7NU75_9HYPH)

HSP 1 Score: 150 bits (379), Expect = 1.920e-39
Identity = 81/192 (42.19%), Postives = 110/192 (57.29%), Query Frame = 2
Query:  266 LNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVHHPATLPIVHCISAHKGQGMGEFQNTLYGVSDS 841
            L+H LP    PE+AF GRSN GKS+L+  L+G  +L RAS  PG T+ +N+F   E        FLVD+PGYGFA   K  V  WN+ + +YL GR +  L R F+L+D RHGL+P D+++L  L    V   VVLTK DK  P  L + +E   +    HPA  P +   S+ KG G  E + T+  + +S
Sbjct:   32 LDH-LPPDDRPEIAFAGRSNVGKSSLINALVGQLRLARASNTPGRTQELNFFTDPER-----DLFLVDMPGYGFAEAPKEKVAAWNKVIRAYLAGRRT--LLRVFLLIDARHGLKPPDDEILDLLDGAAVSYQVVLTKADKIKPTDLEKVMERTLKALAKHPAAFPAIIATSSEKGLGFEELRGTIAQLLES 215          
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Match: UPI001FE65B25 (ribosome biogenesis GTP-binding protein YihA/YsxC n=1 Tax=Azospirillum rugosum TaxID=416170 RepID=UPI001FE65B25)

HSP 1 Score: 149 bits (377), Expect = 3.080e-39
Identity = 84/188 (44.68%), Postives = 111/188 (59.04%), Query Frame = 2
Query:  260 ASLNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVHHPATLPIVHCISAHKGQGMGEFQNTL 823
            A    +LP A  PEVAF GRSN GKS+LV  L G   L R S  PG T+ +N+F L  GG    +  LVD+PGYG+A+ESK  V  WN  V  YL+GR +  LRR  VL+D RHGL+P+D+++++ L    V  +VVLTK DK    +L +  +        HPA  P VH  S+ KG G+ E + +L
Sbjct:   26 AQTPDQLPEADLPEVAFAGRSNVGKSSLVNALTGRKTLARTSNTPGRTQQLNFFDL--GG----RLKLVDMPGYGYAKESKEKVEAWNDMVRRYLKGRVT--LRRALVLIDSRHGLKPNDDEIMTMLDKAAVPYVVVLTKADKVRSQELAEVTKRCEAGLKKHPAAFPQVHITSSEKGLGIAELRASL 205          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI28_9PHAE1.300e-16998.37EngB-type G domain-containing protein n=2 Tax=Ecto... [more]
A0A835YYM3_9STRA2.250e-6045.38YihA2, YihA/EngB-like GTPase n=1 Tax=Tribonema min... [more]
A0A482SLS6_9ARCH3.270e-4643.69Probable GTP-binding protein EngB n=1 Tax=archaeon... [more]
A0A7S3GRN4_9STRA1.880e-4439.83Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A1G7WQA0_9PROT2.340e-4244.79Probable GTP-binding protein EngB n=1 Tax=Roseospi... [more]
A0A6N6VR93_9HYPH3.500e-4144.92Probable GTP-binding protein EngB n=1 Tax=Parvibac... [more]
A0A0F2KYA2_9PROT1.200e-4043.81Probable GTP-binding protein EngB n=1 Tax=Azospiri... [more]
A0A0P0EPD7_AZOBR2.700e-4043.01Probable GTP-binding protein EngB n=11 Tax=Azospir... [more]
A0A1I7NU75_9HYPH1.920e-3942.19Probable GTP-binding protein EngB n=4 Tax=Hyphomic... [more]
UPI001FE65B253.080e-3944.68ribosome biogenesis GTP-binding protein YihA/YsxC ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1249contigE-siliculosus-1a_F_contig1249:12721..14899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size744
Model size1303
Exons2
Ec32 orthologEc-26_003560.1
Ec32 ortholog descriptionYihA2, YihA/EngB-like GTPase
Hectar predicted targeting categorychloroplast
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.V
EggNOG OGsCOG0218@1,KOG2486@2759
EggNOG free text desc.GTP binding
Seed eggNOG ortholog2880.D8LHL3
Seed ortholog evalue8.2e-134
Seed ortholog score483.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1249.1546.1prot_E-siliculosus-1a_F_contig1249.1546.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1249 13180..13923 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927771.037347-UTR-E-siliculosus-1a_F_contig1249:12720..131791622927771.037347-UTR-E-siliculosus-1a_F_contig1249:12720..13179Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1249 12721..13179 -
1696318673.4750547-UTR-E-siliculosus-1a_F_contig1249:12720..131791696318673.4750547-UTR-E-siliculosus-1a_F_contig1249:12720..13179Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1249 12721..13179 -
1622927771.0704408-UTR-E-siliculosus-1a_F_contig1249:13923..139491622927771.0704408-UTR-E-siliculosus-1a_F_contig1249:13923..13949Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1249 13924..13949 -
1696318673.4961362-UTR-E-siliculosus-1a_F_contig1249:13923..139491696318673.4961362-UTR-E-siliculosus-1a_F_contig1249:13923..13949Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1249 13924..13949 -
1622927771.0860841-UTR-E-siliculosus-1a_F_contig1249:14825..148991622927771.0860841-UTR-E-siliculosus-1a_F_contig1249:14825..14899Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1249 14826..14899 -
1696318673.5054188-UTR-E-siliculosus-1a_F_contig1249:14825..148991696318673.5054188-UTR-E-siliculosus-1a_F_contig1249:14825..14899Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1249 14826..14899 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927771.0524447-CDS-E-siliculosus-1a_F_contig1249:13179..139231622927771.0524447-CDS-E-siliculosus-1a_F_contig1249:13179..13923Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1249 13180..13923 -
1696318673.4866319-CDS-E-siliculosus-1a_F_contig1249:13179..139231696318673.4866319-CDS-E-siliculosus-1a_F_contig1249:13179..13923Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1249 13180..13923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1249.1546.1

>prot_E-siliculosus-1a_F_contig1249.1546.1 ID=prot_E-siliculosus-1a_F_contig1249.1546.1|Name=mRNA_E-siliculosus-1a_F_contig1249.1546.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=248bp
MRSSAAFRRLRGQLSVATSSPWVWVATGVDPASAIHPPSRKRGSPLRGEY
VSPASLNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGC
TKTVNYFALREGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEG
RSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPA
QLVQSLEGAFQLAVHHPATLPIVHCISAHKGQGMGEFQNTLYGVSDS*
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mRNA from alignment at E-siliculosus-1a_F_contig1249:12721..14899-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1249.1546.1 ID=mRNA_E-siliculosus-1a_F_contig1249.1546.1|Name=mRNA_E-siliculosus-1a_F_contig1249.1546.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2179bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1249:12721..14899- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATCAGACATCAGACCGCGCATCACACTCAAAGAGAGCTCGCCTGGAGGGC TGCAGCAGTCGCCATACCCACCAGGTAGACAATAATGTGGAATCAAGCCT TGTTGTGCGTCATCTCTACAGCAAGAGTTGCATAGGTAGAGCATTTGTGT GCTGGCTCGCCCACGCTGTATATACCCTTCCTTCTGCACGCCCAGAGAAA GCCGCTTACACCCAACTTCGCCATGACAGCCGCGGGAACTGCAACCAGCA GCACCATGCTTGAGTGAGCACCAAATATCTATGTGCTACGAGTAATATGC ATATGCTACAGCAGTACAGCTCTGATTCAAAATTTGAATTGCAGACCACA CGACCGATACGCCGACGAGGTTCAGGTCATGACGCTACAATATGACTGGT TCCCTCTCCCCGCGCCCCTTTTGGGCATGTTCCAAGCGGAAGCTCATGAT AATTGTGCTGTCAACCTCATCTTGCGTGTGAAAATGAGCGATTACACGCA CAGCAGTTGTTGTTCGGTGAGCGTCGGCAGAGGGGGTCCTCGAGGTTGAC CCTCAAGAGCAGTTTATGAACATATCTACAGAGCAGCCGCTGTCATCATG TCGCATAATTTGAGTTGTTGTGGGCAGCACCGCCGATGTGAACCCCGCCA GACATAAAAGCTGTGCATGCCAGAGCCAACCAACCTTACAGCAGGCAGCT GTTGGTCGTTATGGCTCGAGGGCGCAGATGAGGACCTTGTTGACCCCTTT TTTGCTGGATGGGCCCTCTCTACTGTTGCTCCATGTGCAGGTTTCACGCT GAACTTCTGATCGTGGCCACTCCCTTGCCTCTAATCGCTCCCACCCCCGA TGCTTGTTTTCTCTCACTCTGCGGGTGGTATTTGACATGGGGTAGTTTTC GTTCACTACACGTTTTGGGCATTCTCGCGCCCCGTCCGTGCTCCGCCCAG GCCCCGATCAAAGCAGAGCCCGCTGCATGCGTTCTTCCGCTGCATTTCGC CGCCTGCGAGGACAACTCAGCGTCGCGACGTCATCTCCGTGGGTATGGGT GGCGACGGGGGTGGACCCGGCCAGCGCCATCCATCCGCCGTCGCGCAAGA GAGGGTCGCCCTTGCGGGGAGAGTACGTGTCGCCTGCATCCTTGAACCAC GAGCTGCCCACGGCTGGCACGCCGGAAGTCGCCTTCATCGGCCGATCCAA CCAGGGGAAGAGCACCCTCGTCGGGAAGCTTTTAGGAAACCCCAAGCTCG TCCGCGCGTCGAAAGCGCCCGGGTGCACCAAGACGGTGAACTACTTCGCG CTGCGAGAAGGCGGCGCCGAGAGCCCCCAGGCTTTCCTCGTCGACCTTCC CGGCTACGGGTTCGCGAGAGAGAGCAAGAGGGCCGTGCGCGGTTGGAACC AGGCGGTGGGGAGCTACCTTGAGGGGCGCTCGAGCTCCGTGTTGCGAAGG ACGTTCGTGCTGGTGGACGGGCGGCATGGCCTTCAGCCCGACGACGAGCA GATGCTGTCGTTTTTGTCCAGCCGAGACGTGGAGAACATGGTGGTTTTGA CGAAGGTCGACAAGGCTTCGCCGGCCCAACTTGTACAGTCCCTAGAGGGA GCCTTTCAGCTTGCGGTTCATCATCCGGCGACCTTGCCAATCGTGCACTG TATCTCAGCGCACAAGGGGCAGGGGATGGGAGAGTTCCAGAACACTCTGT ACGGAGTGTCAGATTCGTAGCTGTTATGTTCCTTAGACCGGAGCTCTGTG TATGTATTTCCTATTTCAACAGATTAGCACCTTGATGGGGTTAGTTAAAG TAGGGGAGGACCCGTGGCACGGATGAAGGCCTTTCTTTCTTAGGCAATAA ACGTTGCACGCATGTGGGTTAAATGGATGGGATGCTAAGTTGCACGGCAG CTTTGGGAGGTTCCAAGTCACCCAAAGCTGAGGTGGAAAGAAGTTGGGAT AGAGTATCATCCTCTCGACTTCGTTGGTTACTATCTGCTATATATTCATA GGCGTAAGTAGAATTGTTGTCGAATTCACGTTGTTGTCTTATCATGGCGG TCTGCGATATGCCTGTCAATTTCTTATTTGCCATTTTACCTTCCGTGAGC ATCCTTGAAAAACGGCGGTGTTCAGCCGTCTCGCTTTAGGTTGACACGGA AGTCGAACGCCATGGAAAGATGTTGTTCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1249:12721..14899-

>mRNA_E-siliculosus-1a_F_contig1249.1546.1 ID=mRNA_E-siliculosus-1a_F_contig1249.1546.1|Name=mRNA_E-siliculosus-1a_F_contig1249.1546.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1488bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1249:12721..14899- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGTTCTTCCGCTGCATTTCGCCGCCTGCGAGGACAACTCAGCGTCGC
GACGTCATCTCCGTGGGTATGGGTGGCGACGGGGGTGGACCCGGCCAGCG
CCATCCATCCGCCGTCGCGCAAGAGAGGGTCGCCCTTGCGGGGAGAGTAC
GTGTCGCCTGCATCCTTGAACCACGAGCTGCCCACGGCTGGCACGCCGGA
AGTCGCCTTCATCGGCCGATCCAACCAGGGGAAGAGCACCCTCGTCGGGA
AGCTTTTAGGAAACCCCAAGCTCGTCCGCGCGTCGAAAGCGCCCGGGTGC
ACCAAGACGGTGAACTACTTCGCGCTGCGAGAAGGCGGCGCCGAGAGCCC
CCAGGCTTTCCTCGTCGACCTTCCCGGCTACGGGTTCGCGAGAGAGAGCA
AGAGGGCCGTGCGCGGTTGGAACCAGGCGGTGGGGAGCTACCTTGAGGGG
CGCTCGAGCTCCGTGTTGCGAAGGACGTTCGTGCTGGTGGACGGGCGGCA
TGGCCTTCAGCCCGACGACGAGCAGATGCTGTCGTTTTTGTCCAGCCGAG
ACGTGGAGAACATGGTGGTTTTGACGAAGGTCGACAAGGCTTCGCCGGCC
CAACTTGTACAGTCCCTAGAGGGAGCCTTTCAGCTTGCGGTTCATCATCC
GGCGACCTTGCCAATCGTGCACTGTATCTCAGCGCACAAGGGGCAGGGGA
TGGGAGAGTTCCAGAACACTCTGTACGGAGTGTCAGATTCGTAGATGCGT
TCTTCCGCTGCATTTCGCCGCCTGCGAGGACAACTCAGCGTCGCGACGTC
ATCTCCGTGGGTATGGGTGGCGACGGGGGTGGACCCGGCCAGCGCCATCC
ATCCGCCGTCGCGCAAGAGAGGGTCGCCCTTGCGGGGAGAGTACGTGTCG
CCTGCATCCTTGAACCACGAGCTGCCCACGGCTGGCACGCCGGAAGTCGC
CTTCATCGGCCGATCCAACCAGGGGAAGAGCACCCTCGTCGGGAAGCTTT
TAGGAAACCCCAAGCTCGTCCGCGCGTCGAAAGCGCCCGGGTGCACCAAG
ACGGTGAACTACTTCGCGCTGCGAGAAGGCGGCGCCGAGAGCCCCCAGGC
TTTCCTCGTCGACCTTCCCGGCTACGGGTTCGCGAGAGAGAGCAAGAGGG
CCGTGCGCGGTTGGAACCAGGCGGTGGGGAGCTACCTTGAGGGGCGCTCG
AGCTCCGTGTTGCGAAGGACGTTCGTGCTGGTGGACGGGCGGCATGGCCT
TCAGCCCGACGACGAGCAGATGCTGTCGTTTTTGTCCAGCCGAGACGTGG
AGAACATGGTGGTTTTGACGAAGGTCGACAAGGCTTCGCCGGCCCAACTT
GTACAGTCCCTAGAGGGAGCCTTTCAGCTTGCGGTTCATCATCCGGCGAC
CTTGCCAATCGTGCACTGTATCTCAGCGCACAAGGGGCAGGGGATGGGAG
AGTTCCAGAACACTCTGTACGGAGTGTCAGATTCGTAG
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