mRNA_E-siliculosus-1a_F_contig1248.1541.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1248.1541.1
Unique NamemRNA_E-siliculosus-1a_F_contig1248.1541.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1248.1541.1 vs. uniprot
Match: D7FWS7_ECTSI (Deoxyhypusine hydroxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWS7_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 8.640e-31
Identity = 101/130 (77.69%), Postives = 101/130 (77.69%), Query Frame = 3 
Query:   96 MGGEADEKKEIPPLQQLRECLLDRDQPIAKRTHSAFFLRTLNSAEAVSAVGEALLVEEDSALLRHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERFASDPAPEVSQV 485
            MGGE  EKKEIPPLQQLRECLLDR QPIAKRTHSAFFLRTL SAEAVSAVGEALLVEEDSALLRHE                       XXXXXXXXXXXXXXXXXXXXXXXXXXX RFASDPAPEVSQ 
Sbjct:    1 MGGEVQEKKEIPPLQQLRECLLDRGQPIAKRTHSAFFLRTLGSAEAVSAVGEALLVEEDSALLRHELAYILGQMQDEAACETLEKVLGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFASDPAPEVSQT 130
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BLAST of mRNA_E-siliculosus-1a_F_contig1248.1541.1 vs. uniprot
Match: A0A7S2V0Z7_9STRA (Deoxyhypusine hydroxylase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0Z7_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.160e-13
Identity = 35/57 (61.40%), Postives = 48/57 (84.21%), Query Frame = 3 
Query:  123 EIPPLQQLRECLLDRDQPIAKRTHSAFFLRTLNSAEAVSAVGEALLVEEDSALLRHE 293
            +IPPL+ L+EC+L   +P+AKRTH+AF+LRT+NS EAV A+ +A+  +EDSALLRHE
Sbjct:   13 DIPPLENLKECVLQTSEPVAKRTHAAFYLRTINSKEAVEAICQAVSNKEDSALLRHE 69
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BLAST of mRNA_E-siliculosus-1a_F_contig1248.1541.1 vs. uniprot
Match: W7TL38_9STRA (Deoxyhypusine hydroxylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TL38_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.110e-10
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 3 
Query:  129 PPLQQLRECLLDRDQPIAKRTHSAFFLRTLNSAEAVSAVGEALLVEEDSALLRHE 293
            P +  LR+CLLD  QPI KRTH+AF LRT   +EAVSA+GEAL  ++DSALLRHE
Sbjct:   32 PDVAVLRKCLLDVSQPIQKRTHAAFVLRTDGESEAVSAIGEALRNKQDSALLRHE 86
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BLAST of mRNA_E-siliculosus-1a_F_contig1248.1541.1 vs. uniprot
Match: A0A7S4DDJ9_HETAK (Deoxyhypusine monooxygenase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDJ9_HETAK)

HSP 1 Score: 68.2 bits (165), Expect = 2.620e-9
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 3 
Query:  120 KEIPPLQQLRECLLDRDQPIAKRTHSAFFLRTLNSAEAVSAVGEALLVEEDSALLRHE 293
            +  P LQ L  CLL+  +PIAKRTH+AFFLRTL + EAV  +  A++   DS LLRHE
Sbjct:    2 ENCPALQDLEACLLNSSEPIAKRTHAAFFLRTLGTGEAVEVICRAVVDSSDSPLLRHE 59
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BLAST of mRNA_E-siliculosus-1a_F_contig1248.1541.1 vs. uniprot
Match: A0A835ZDK9_9STRA (Deoxyhypusine hydroxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.470e-9
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 3 
Query:  123 EIPPLQQLRECLLDRDQPIAKRTHSAFFLRTLNSAEAVSAVGEALLVEEDSALLRHE 293
            + PP+  L  CL D  QP+ KRTH+AF+LRT+  A+AV A+  AL   +DSALLRHE
Sbjct:   15 KFPPVPALGACLADTAQPLGKRTHAAFYLRTIGGADAVDAIAVALRNRDDSALLRHE 71
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1248.1541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FWS7_ECTSI8.640e-3177.69Deoxyhypusine hydroxylase n=2 Tax=Ectocarpus TaxID... [more]
A0A7S2V0Z7_9STRA2.160e-1361.40Deoxyhypusine hydroxylase n=1 Tax=Fibrocapsa japon... [more]
W7TL38_9STRA1.110e-1065.45Deoxyhypusine hydroxylase n=2 Tax=Monodopsidaceae ... [more]
A0A7S4DDJ9_HETAK2.620e-955.17Deoxyhypusine monooxygenase (Fragment) n=1 Tax=Het... [more]
A0A835ZDK9_9STRA3.470e-954.39Deoxyhypusine hydroxylase n=1 Tax=Tribonema minus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1248contigE-siliculosus-1a_F_contig1248:342..2854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size519
Model size975
Exons4
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.C
EC1.14.99.29,2.1.1.17
EggNOG OGsCOG1413@1,KOG0567@2759
EggNOG free text desc.deoxyhypusine monooxygenase activity
GOsGO:0000226,GO:0003674,GO:0003824,GO:0004497,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006417,GO:0006464,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0008150,GO:0008152,GO:0008283,GO:0008612,GO:0009058,GO:0009268,GO:0009628,GO:0009889,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010608,GO:0012505,GO:0016020,GO:0016043,GO:0016491,GO:0016705,GO:0018193,GO:0018205,GO:0019135,GO:0019222,GO:0019538,GO:0030447,GO:0031323,GO:0031325,GO:0031326,GO:0031329,GO:0031331,GO:0031984,GO:0032268,GO:0034248,GO:0036176,GO:0036177,GO:0036178,GO:0036211,GO:0040007,GO:0042175,GO:0042710,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044010,GO:0044011,GO:0044182,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044764,GO:0046872,GO:0046914,GO:0048037,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051604,GO:0051703,GO:0051704,GO:0055114,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090605,GO:0090609,GO:0098827,GO:1901564,GO:2000112,GO:2000765
KEGG ModuleM00091
KEGG Pathwayko00564,ko01100,ko01110,ko04919,ko04974,map00564,map01100,map01110,map04919,map04974
KEGG ReactionR02056
KEGG TC2.A.1.13
KEGG koko:K06072,ko:K08187,ko:K16369
KEGG rclassRC00003,RC00060
Preferred nameLIA1
Seed eggNOG ortholog2880.D7FWS7
Seed ortholog evalue1e-26
Seed ortholog score126.7
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1248.1541.1prot_E-siliculosus-1a_F_contig1248.1541.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1248 703..2759 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927769.1906483-UTR-E-siliculosus-1a_F_contig1248:341..7021622927769.1906483-UTR-E-siliculosus-1a_F_contig1248:341..702Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1248 342..702 -
1696318672.3695674-UTR-E-siliculosus-1a_F_contig1248:341..7021696318672.3695674-UTR-E-siliculosus-1a_F_contig1248:341..702Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1248 342..702 -
1622927769.2651403-UTR-E-siliculosus-1a_F_contig1248:2759..28541622927769.2651403-UTR-E-siliculosus-1a_F_contig1248:2759..2854Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1248 2760..2854 -
1696318672.4329739-UTR-E-siliculosus-1a_F_contig1248:2759..28541696318672.4329739-UTR-E-siliculosus-1a_F_contig1248:2759..2854Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1248 2760..2854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927769.2060854-CDS-E-siliculosus-1a_F_contig1248:702..9241622927769.2060854-CDS-E-siliculosus-1a_F_contig1248:702..924Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1248 703..924 -
1696318672.3794343-CDS-E-siliculosus-1a_F_contig1248:702..9241696318672.3794343-CDS-E-siliculosus-1a_F_contig1248:702..924Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1248 703..924 -
1622927769.2196429-CDS-E-siliculosus-1a_F_contig1248:1185..12681622927769.2196429-CDS-E-siliculosus-1a_F_contig1248:1185..1268Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1248 1186..1268 -
1696318672.3911994-CDS-E-siliculosus-1a_F_contig1248:1185..12681696318672.3911994-CDS-E-siliculosus-1a_F_contig1248:1185..1268Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1248 1186..1268 -
1622927769.2351918-CDS-E-siliculosus-1a_F_contig1248:1568..16251622927769.2351918-CDS-E-siliculosus-1a_F_contig1248:1568..1625Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1248 1569..1625 -
1696318672.406817-CDS-E-siliculosus-1a_F_contig1248:1568..16251696318672.406817-CDS-E-siliculosus-1a_F_contig1248:1568..1625Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1248 1569..1625 -
1622927769.2537906-CDS-E-siliculosus-1a_F_contig1248:2602..27591622927769.2537906-CDS-E-siliculosus-1a_F_contig1248:2602..2759Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1248 2603..2759 -
1696318672.417119-CDS-E-siliculosus-1a_F_contig1248:2602..27591696318672.417119-CDS-E-siliculosus-1a_F_contig1248:2602..2759Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1248 2603..2759 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1248.1541.1

>prot_E-siliculosus-1a_F_contig1248.1541.1 ID=prot_E-siliculosus-1a_F_contig1248.1541.1|Name=mRNA_E-siliculosus-1a_F_contig1248.1541.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=173bp
MGGEADEKKEIPPLQQLRECLLDRDQPIAKRTHSAFFLRTLNSAEAVSAV
GEALLVEEDSALLRHELAYILGQMQDEAACETLEKVLGNTSDDCMVRHEA
AEALGAIGADSSVPALERFASDPAPEVSQVRRSNLRSYRMYISLGARDSR
VGSVPRLLFCDGRAQNYGSKKI*
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mRNA from alignment at E-siliculosus-1a_F_contig1248:342..2854-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1248.1541.1 ID=mRNA_E-siliculosus-1a_F_contig1248.1541.1|Name=mRNA_E-siliculosus-1a_F_contig1248.1541.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2513bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1248:342..2854- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGTCAGGCCTCAGGCACACGCCGCCAACGCTGACGCGGACACCCTCCGAC
CTCCTCCATCTCTCTTGAGGTGGTGCGGACACAACCTGTGCAGCAATGGG
AGGAGAAGCAGATGAGAAAAAGGAGATCCCCCCTCTGCAACAGCTCCGAG
AATGTCTGCTGGACCGTGATCAGCCGATCGCCAAGCGCACACACTCAGCG
TTTTTCCTGCGGACCTTGAATAGTGCTGAGGCCGTCAGCGCCGTTGGGGA
AGGTGTGTGTGTGCGTGCGAGCGAGCATCCGTTTCTGTTTGTAATGTGAC
AGGGGGTGGGGGGGGAAGCGTCGGACGTGGGAACGATGCATGGGTCGTGC
CTGTTGTGGTGCGGCCCTCGGCTCTAGGTTTTGGGGTAAAGCGGGGTATT
ATACCAAGTGCCGTGTTGCCTTCCTGCGAGAGCGAGTACGCACGAGTTGT
CGAGTCATCGGACACCCCAACTGGCCACCCAACGCTATGAGGGCGTCCAG
AGGGTGATGTTGGCAGATCTCGTCTGTCAAAGGGTTTTCCTTGCAGAGCC
GTCCGGTTTTCACACCCTTTTGATCATGGTCCAATCGAGCCTTGAAAGTC
GTCTACGTGGGATTTTTGCCGATTTGCCATATGACCCGCTCTCACCGCAG
CCGTGCGCCATCTGAATCCGGAGTACGGTACATACATTGGCATGTTCAAC
ATTGCCCGGAGACACAGCAGCAGCCTTCGCGACAGTACTGTATTGATCTT
GGTTTCAGTAAGGAGTACGGGATCGGGGGTTAGGGGTAGGGATAGGGATA
CGGATACGAAACCCCCCTCCCTATTTCATAGACAACAATAGATCAATGAA
AAATATCCTGGCGAAGGGTGTAGTTTTCTCTGACGCTATGATTCCATTGT
TAATCTGTCTCTGACCCTTTTCTATGATAGAGATGGTACTCGTTGTGTCA
TATTAAGAAAAATAAAAATAAAATCCTGGCGAAGCCACGAAGACAACGCT
GGCTGCTACGCGAAGCACTACAGTAGTCTAGGTTTCAACCGCCAAAACCT
GTCGCACGTCCTGCTGTTGTCTGTAAGTTACCTGGTTCCAGCTGTAGCCG
CCTACAGCAGTAGTTGTGTGTCTGTGTCACAACGGAGGTAGGTGTTACTC
GGTGAGCTCCGCGAACAGCGGCAATTTTCTCTTGAGCATCAACTGCTGTC
CACGTGTCCCCCTATTGGTCGCCCCCCAGCTCTCTTGGTGGAGGAAGACT
CGGCCCTGCTCCGTCACGAGCTAGCCTACATCCTTGGTGAGATGAACTAA
ATCTGTTCGTTTACAAGGTAGAAAGCTGATCCATCCGTCAACGGTGGGAT
GTTGGACTCCTGGCATAGGTTGAAGTATGAAATTGCACTTGTACAGAAGT
ATCATACTGTAATAGTATGTTGTACATGTGCGCCAAAAGGGGTGCGCGGC
TGCGCTGCTTACCTGCGAAAGTCCATGGAGCTCTCCCCTTGCATGCGTGT
TTTCGTGTACGGAGTATACTGTAATTTCGAAGCAAAACATGCGCATGCAT
GCCGTGTGCTATCTATCGACCAATCCCCACGGGCAGGCCAAATGCAGGAC
GAAGCGGCTTGCGAAACGCTCGAGAAGGTGCTCGGAAACACGTCCGACGA
CTGCATGGTCAGGCACGAGGTGGGCGAGTACTGCTGTACGGGAGTGGCGC
GCGTGGTACCCCGGAAGTTGGGCAGGGGGACGAGCGGTACCCATTAAGGA
AAACATGCCTTGCAGTTACCAGATTGTTGACCCTAGGCTGCTTGATAGTG
GTGGCATCTCTGCTCTCCTTCCAGCACTGACTGAACGCTCGCTGCGTGTG
CTGTCTAATTCTTGGGCGTGTGTGCTGACTGTTTTGCCAAAGTATGTGTC
GTTCGCTTTCGTTTTGTGCTTGATTTGTAGGCTGCGGAAGCGCTTGGCGC
GATCGGGGCGGACAGCTCCGTACCGGCGCTGGAGCGATTTGCTTCGGACC
CAGCGCCAGAGGTGTCCCAGGTGCGAAGATCCAATCTGCGTTCCTATCGC
ATGTATATAAGTTTAGGTGCGCGGGATTCGAGAGTTGGAAGCGTGCCACG
ATTGCTTTTTTGTGACGGACGGGCTCAAAACTACGGGAGTAAAAAAATAT
AGGGCAATTGACAAAATGAGGTATACCCCGTAAAAAATATACATAAGAGA
AGTGTGGAAGAATGGAGCACTCGCGAGCTCCTCGTATTTGATGCTAGGGG
CGAAGAGACCGAGGTGCTGCGTCCTCTCGTGTTTAGTGTTGTGGCTGTTT
GCAGGGGGGCCGCGCAACCCCGACTGGCTTGGACCGATGCGTCAACACAA
GAAAAATAAAATGTGCGCAGTACTGTTTTTACCAGGTAGTAAAGTACTTG
CATCCGCAGGGCAAAGCAAATCACACCGCCGCCTCCATCCTCCGTTCAAG
CTCCCCACGCCATGTCCTTCCACGGCCTTGTAACTGAACTTGGCCCGGCC
TTCTAAGTCGCGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1248:342..2854-

>mRNA_E-siliculosus-1a_F_contig1248.1541.1 ID=mRNA_E-siliculosus-1a_F_contig1248.1541.1|Name=mRNA_E-siliculosus-1a_F_contig1248.1541.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1038bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1248:342..2854- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGAGGAGAAGCAGATGAGAAAAAGGAGATCCCCCCTCTGCAACAGCT
CCGAGAATGTCTGCTGGACCGTGATCAGCCGATCGCCAAGCGCACACACT
CAGCGTTTTTCCTGCGGACCTTGAATAGTGCTGAGGCCGTCAGCGCCGTT
GGGGAAGATGGGAGGAGAAGCAGATGAGAAAAAGGAGATCCCCCCTCTGC
AACAGCTCCGAGAATGTCTGCTGGACCGTGATCAGCCGATCGCCAAGCGC
ACACACTCAGCGTTTTTCCTGCGGACCTTGAATAGTGCTGAGGCCGTCAG
CGCCGTTGGGGAAGCTCTCTTGGTGGAGGAAGACTCGGCCCTGCTCCGTC
ACGAGCTAGCCTACATCCTTGCTCTCTTGGTGGAGGAAGACTCGGCCCTG
CTCCGTCACGAGCTAGCCTACATCCTTGGCCAAATGCAGGACGAAGCGGC
TTGCGAAACGCTCGAGAAGGTGCTCGGAAACACGTCCGACGACTGCATGG
TCAGGCACGAGGCCAAATGCAGGACGAAGCGGCTTGCGAAACGCTCGAGA
AGGTGCTCGGAAACACGTCCGACGACTGCATGGTCAGGCACGAGGCTGCG
GAAGCGCTTGGCGCGATCGGGGCGGACAGCTCCGTACCGGCGCTGGAGCG
ATTTGCTTCGGACCCAGCGCCAGAGGTGTCCCAGGTGCGAAGATCCAATC
TGCGTTCCTATCGCATGTATATAAGTTTAGGTGCGCGGGATTCGAGAGTT
GGAAGCGTGCCACGATTGCTTTTTTGTGACGGACGGGCTCAAAACTACGG
GAGTAAAAAAATATAGGCTGCGGAAGCGCTTGGCGCGATCGGGGCGGACA
GCTCCGTACCGGCGCTGGAGCGATTTGCTTCGGACCCAGCGCCAGAGGTG
TCCCAGGTGCGAAGATCCAATCTGCGTTCCTATCGCATGTATATAAGTTT
AGGTGCGCGGGATTCGAGAGTTGGAAGCGTGCCACGATTGCTTTTTTGTG
ACGGACGGGCTCAAAACTACGGGAGTAAAAAAATATAG
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