mRNA_E-siliculosus-1a_F_contig12476.1540.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12476.1540.1
Unique NamemRNA_E-siliculosus-1a_F_contig12476.1540.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12476.1540.1 vs. uniprot
Match: D1J783_ECTSI (Uncharacterized protein Escp124 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J783_ECTSI)

HSP 1 Score: 428 bits (1101), Expect = 1.570e-151
Identity = 217/219 (99.09%), Postives = 219/219 (100.00%), Query Frame = 1
Query:    1 MIETLKILFSIYRLEISLLIGFIFIAFILEQKFQFDKPKKWFIAFNALLFQRGFSALAYYVPYLDMINLHIPLLKDENPLVLRVFLPDFVADSIDLVQQIPFLTFVYISLGYGLFIRYKIPKDRFIRYNVMYSIMLISLQGIINDMFITFIETIILDSHIRSTITLVSFFLWLALYIPCFIRSFAGKYDENKFIREAVEVHLGRDGPDFIWWDKKRKGD 657
            MIETLKILFSIYRLEISLLIGFIFIAFILEQKFQFDKPKKWFIAFNALLFQRGFSALAYYVPYLDMINLHIPLLKDENPLVLRVFLPDFVADSIDLVQQIPFLTFVYISLGYGLFIRYKIPKDRFIRYNVMYSIMLISLQGIINDMFITFIETIILDSHIR+TITLVSFFLWLALYIPCFIRSFAGKYDENKFIREAVEVHLGRDGPDFIWWDK+RKGD
Sbjct:    1 MIETLKILFSIYRLEISLLIGFIFIAFILEQKFQFDKPKKWFIAFNALLFQRGFSALAYYVPYLDMINLHIPLLKDENPLVLRVFLPDFVADSIDLVQQIPFLTFVYISLGYGLFIRYKIPKDRFIRYNVMYSIMLISLQGIINDMFITFIETIILDSHIRATITLVSFFLWLALYIPCFIRSFAGKYDENKFIREAVEVHLGRDGPDFIWWDKRRKGD 219          
BLAST of mRNA_E-siliculosus-1a_F_contig12476.1540.1 vs. uniprot
Match: A0A5A4MJ83_9PHAE (Uncharacterized protein n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MJ83_9PHAE)

HSP 1 Score: 333 bits (853), Expect = 1.150e-113
Identity = 151/215 (70.23%), Postives = 192/215 (89.30%), Query Frame = 1
Query:    7 ETLKILFSIYRLEISLLIGFIFIAFILEQKFQFDKPKKWFIAFNALLFQRGFSALAYYVPYLDMINLHIPLLKDENPLVLRVFLPDFVADSIDLVQQIPFLTFVYISLGYGLFIRYKIPKDRFIRYNVMYSIMLISLQGIINDMFITFIETIILDSHIRSTITLVSFFLWLALYIPCFIRSFAGKYDENKFIREAVEVHLGRDGPDFIWWDKKRK 651
            E +++L  +Y LEI +L+ F+ IAFILEQKF F KP++WF AFNAL+F R FSA+AY VPYLDMINLHIPLLKD++PLVLR+F+P+F+ADSID++QQIPFLTF+Y+S+GYG FIRYKIP DRF+RYN+MYSIML+SLQGI+N+MF+ F +T I+D ++RS +TL++FF WL+LYIPCF+R+F GKYD N+FIREAVEVHLGRDGPDFIWWD++RK
Sbjct:    3 EAIRVLLGLYWLEIVILVLFLVIAFILEQKFNFKKPRQWFFAFNALIFTRSFSAIAYAVPYLDMINLHIPLLKDDHPLVLRLFMPNFIADSIDVIQQIPFLTFIYLSIGYGFFIRYKIPGDRFVRYNIMYSIMLVSLQGILNEMFLAFTDTFIVDDYLRSQVTLMAFFCWLSLYIPCFVRAFLGKYDRNEFIREAVEVHLGRDGPDFIWWDRERK 217          
BLAST of mRNA_E-siliculosus-1a_F_contig12476.1540.1 vs. uniprot
Match: A0A1I9LVT6_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVT6_9PHAE)

HSP 1 Score: 325 bits (833), Expect = 1.280e-110
Identity = 149/215 (69.30%), Postives = 189/215 (87.91%), Query Frame = 1
Query:    7 ETLKILFSIYRLEISLLIGFIFIAFILEQKFQFDKPKKWFIAFNALLFQRGFSALAYYVPYLDMINLHIPLLKDENPLVLRVFLPDFVADSIDLVQQIPFLTFVYISLGYGLFIRYKIPKDRFIRYNVMYSIMLISLQGIINDMFITFIETIILDSHIRSTITLVSFFLWLALYIPCFIRSFAGKYDENKFIREAVEVHLGRDGPDFIWWDKKRK 651
            E +KI+F++Y LEI +LI F+ +AF+LEQK+ F+KP+KWF++FNALLFQR FSA AY++PYLDMINLHIPLLKD++PL+LR+F+P+F+ADSID +QQIPFLTF+Y+   YG FIR KIP DR IRYN+MYSIML+SLQGIIN+MFI F ++ I D ++R+ ITL++FF WL+LYIPCF+R+  GKYD+NKFIREAVEVHLGRDGPDFIWWD+ RK
Sbjct:    3 EAIKIMFNLYWLEIVILILFVLLAFVLEQKWNFNKPRKWFLSFNALLFQRSFSAAAYFIPYLDMINLHIPLLKDDHPLILRLFMPNFIADSIDFIQQIPFLTFIYLLFAYGFFIRSKIPGDRLIRYNIMYSIMLVSLQGIINEMFIAFTDSFIYDDYLRAQITLMAFFWWLSLYIPCFVRALLGKYDKNKFIREAVEVHLGRDGPDFIWWDRTRK 217          
BLAST of mRNA_E-siliculosus-1a_F_contig12476.1540.1 vs. uniprot
Match: A0A6B7EVD7_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVD7_9PHAE)

HSP 1 Score: 320 bits (820), Expect = 1.220e-108
Identity = 147/215 (68.37%), Postives = 187/215 (86.98%), Query Frame = 1
Query:    7 ETLKILFSIYRLEISLLIGFIFIAFILEQKFQFDKPKKWFIAFNALLFQRGFSALAYYVPYLDMINLHIPLLKDENPLVLRVFLPDFVADSIDLVQQIPFLTFVYISLGYGLFIRYKIPKDRFIRYNVMYSIMLISLQGIINDMFITFIETIILDSHIRSTITLVSFFLWLALYIPCFIRSFAGKYDENKFIREAVEVHLGRDGPDFIWWDKKRK 651
            E + I   +Y  EI++L+ F+ IAFILEQKF F KP++WF++FN L+F+RG SALAY VPYLDMINLHIPLLKD +PLVLR+F+P+F+ +SID++QQ+PFL+F+Y+S+GYG FIRYKIP DR +RYN+MYSIML+SLQGIIN+MFI+F E  I++ ++RS +TL++FF WL LYIPCF+R+F GKYDENKFIREAVEVHLGRDGPDFIWWD+ RK
Sbjct:    3 EAIGIALGLYWAEITILVLFLVIAFILEQKFNFKKPRQWFLSFNNLIFRRGLSALAYAVPYLDMINLHIPLLKDNHPLVLRLFMPNFITESIDIMQQVPFLSFIYLSIGYGFFIRYKIPGDRLVRYNIMYSIMLVSLQGIINEMFISFTEAFIVNDYLRSQVTLMAFFCWLTLYIPCFVRAFLGKYDENKFIREAVEVHLGRDGPDFIWWDRIRK 217          
BLAST of mRNA_E-siliculosus-1a_F_contig12476.1540.1 vs. uniprot
Match: A0A8F0F7K9_9PHAE (Uncharacterized protein n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7K9_9PHAE)

HSP 1 Score: 270 bits (691), Expect = 5.850e-89
Identity = 123/222 (55.41%), Postives = 173/222 (77.93%), Query Frame = 1
Query:    1 MIETLK-----ILFSIYRLEISLLIGFIFIAFILEQKFQFDKPKKWFIAFNALLFQRGFSALAYYVPYLDMINLHIPLLKDENPLVLRVFLPDFVADSIDLVQQIPFLTFVYISLGYGLFIRYKIPKDRFIRYNVMYSIMLISLQGIINDMFITFIETIILDSHIRSTITLVSFFLWLALYIPCFIRSFAGKYDENKFIREAVEVHLGRDGPDFIWWDKKRK 651
            MI+ LK     + F +Y LE+ + I F+FI FILEQ+F F+KP+KWF AFN L+ QR  S +AYYVPYLD++N H+PL+ + +P ++R+FLP+FVA+SID+VQ+IPFL+F+Y+ LGYG+ IRYKIPKDRF+R+N+MY I++IS QGI +++F+ F    + D   +S   L++F  W+ ++IPCF+R+  GKY+ N F+REA+EVHLGRDGPDFIWWD+ RK
Sbjct:    1 MIDKLKENLVELFFGVYWLELLIFILFLFIGFILEQRFNFNKPRKWFFAFNGLICQRVLSVMAYYVPYLDVVNTHMPLIAEAHPFLVRLFLPNFVAESIDIVQRIPFLSFIYLMLGYGVLIRYKIPKDRFVRFNIMYGIIIISFQGIFHELFLNFTNAFVKDPVDQSEAALLAFLSWVVIFIPCFLRALFGKYEGNTFMREAIEVHLGRDGPDFIWWDRTRK 222          
BLAST of mRNA_E-siliculosus-1a_F_contig12476.1540.1 vs. uniprot
Match: A0A8F0JYW7_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JYW7_9PHAE)

HSP 1 Score: 266 bits (680), Expect = 2.320e-87
Identity = 116/209 (55.50%), Postives = 165/209 (78.95%), Query Frame = 1
Query:   25 FSIYRLEISLLIGFIFIAFILEQKFQFDKPKKWFIAFNALLFQRGFSALAYYVPYLDMINLHIPLLKDENPLVLRVFLPDFVADSIDLVQQIPFLTFVYISLGYGLFIRYKIPKDRFIRYNVMYSIMLISLQGIINDMFITFIETIILDSHIRSTITLVSFFLWLALYIPCFIRSFAGKYDENKFIREAVEVHLGRDGPDFIWWDKKRK 651
            FS Y LE+S+ + FI + F++E+ F F KP+KWF+AFN L+ QR  S LA+YVPYLD++N HIPL+ + +PL++R+FLP F+A S+D+VQ+IPFL+F+Y+ LGYG+ IRYKIP+DRF+R+N+MY I++IS QGI +++FI F    + D   +S   L++F  W+ ++IPCF+R+  GKYD N F+REA+E+HLGRDGPDFIWWD+ RK
Sbjct:    9 FSAYWLELSIFLFFIVLGFVMEKAFNFTKPRKWFMAFNGLICQRVLSVLAFYVPYLDVVNTHIPLIAETHPLLVRIFLPTFIAQSVDIVQRIPFLSFLYLLLGYGILIRYKIPEDRFVRFNIMYGILIISFQGIFHELFINFTNVFVKDPIDKSEAALMAFLAWVLIFIPCFLRALFGKYDSNTFMREAIEIHLGRDGPDFIWWDRTRK 217          
BLAST of mRNA_E-siliculosus-1a_F_contig12476.1540.1 vs. uniprot
Match: A0A0S0G9V7_COSCS (Uncharacterized protein n=24 Tax=Laminariales TaxID=2886 RepID=A0A0S0G9V7_COSCS)

HSP 1 Score: 263 bits (672), Expect = 4.510e-86
Identity = 109/215 (50.70%), Postives = 170/215 (79.07%), Query Frame = 1
Query:    7 ETLKILFSIYRLEISLLIGFIFIAFILEQKFQFDKPKKWFIAFNALLFQRGFSALAYYVPYLDMINLHIPLLKDENPLVLRVFLPDFVADSIDLVQQIPFLTFVYISLGYGLFIRYKIPKDRFIRYNVMYSIMLISLQGIINDMFITFIETIILDSHIRSTITLVSFFLWLALYIPCFIRSFAGKYDENKFIREAVEVHLGRDGPDFIWWDKKRK 651
              L++ F +Y +EI + I F+ + F+LEQKF F+KP+KWF+AFN L+ QR  S LAYY+PYLD++N H+PL+ + +P ++R+FLP+++A+S++++Q++PFL+F+Y+ +GYG+ +RYKIP+DRF+R+N+MY I++IS QGI +++FI F    + +   +S   L++F  W+ ++IPCF+R+  GKY+ N F+REA+EVHLGRDGPDFIWWD+ RK
Sbjct:    8 NVLELFFGVYWIEIFIFILFLVLGFVLEQKFNFNKPRKWFLAFNGLVCQRVLSVLAYYIPYLDVVNTHMPLIAETHPFLVRIFLPNYIAESVNIIQKVPFLSFIYLLVGYGILVRYKIPEDRFVRFNIMYGIIIISFQGIFHELFINFTNVFVKNPADKSEAALLAFLAWVVIFIPCFLRALFGKYEGNTFMREAIEVHLGRDGPDFIWWDRTRK 222          
BLAST of mRNA_E-siliculosus-1a_F_contig12476.1540.1 vs. uniprot
Match: A0A141BSC7_9PHAE (Orf219 n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSC7_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 5.740e-84
Identity = 109/209 (52.15%), Postives = 160/209 (76.56%), Query Frame = 1
Query:   25 FSIYRLEISLLIGFIFIAFILEQKFQFDKPKKWFIAFNALLFQRGFSALAYYVPYLDMINLHIPLLKDENPLVLRVFLPDFVADSIDLVQQIPFLTFVYISLGYGLFIRYKIPKDRFIRYNVMYSIMLISLQGIINDMFITFIETIILDSHIRSTITLVSFFLWLALYIPCFIRSFAGKYDENKFIREAVEVHLGRDGPDFIWWDKKRK 651
            F +Y +EI L   F+ + F++EQKF   +P+KWF+ FN ++ QR  S   YY+PYLD+IN H+PL+++ +P ++R+FLP F+  S+  +QQIPFL F+Y+ LGYG+FIRYK+PKDRFIRYN+MY I+++S QGII+++F+   +   L+S  RS   L++F  W+ ++IPCFIR+  GKY+ N F+REA+EVHLGRDGPDF+WWD+++K
Sbjct:   10 FDVYWIEIILFFSFLGLGFLVEQKFNIKEPRKWFVKFNGIILQRILSLFCYYIPYLDIINTHLPLIEETHPYIVRLFLPTFIIGSLQFIQQIPFLPFIYLMLGYGIFIRYKLPKDRFIRYNIMYGIIILSFQGIIHELFLNITKVFCLNSKDRSEAALLTFLGWILIFIPCFIRAILGKYESNPFLREAIEVHLGRDGPDFVWWDRQKK 218          
BLAST of mRNA_E-siliculosus-1a_F_contig12476.1540.1 vs. uniprot
Match: A0A2R4QPT5_9PHAE (Hypothetical chloroplast protein n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPT5_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 9.310e-84
Identity = 109/209 (52.15%), Postives = 162/209 (77.51%), Query Frame = 1
Query:   16 KILFSIYRLEISLLIGFIFIAFILEQKFQFDKPKKWFIAFNALLFQRGFSALAYYVPYLDMINLHIPLLKDENPLVLRVFLPDFVADSIDLVQQIPFLTFVYISLGYGLFIRYKIPKDRFIRYNVMYSIMLISLQGIINDMFITFIETIILDSHIRSTITLVSFFLWLALYIPCFIRSFAGKYDENKFIREAVEVHLGRDGPDFIWWDK 642
            ++ F +Y +EI +   F+ + FILEQKF   KP+KWF  FN ++ QR  S  AYY+PYLD+IN H+PL+++ +P ++R+FLP+++A+S+ ++QQIPFL F+Y+ LGYG+FIRYK+PKDR +R+N+MY I++IS QGII+++F+ F +    DS  RS   L++F  W+ ++IPCF+R+  GKY+ N F+REA+EVHLGRDGPDF+WWD+
Sbjct:    7 ELFFDVYWIEIIIFFSFLTLGFILEQKFNIKKPRKWFFEFNTVILQRLLSIFAYYIPYLDVINTHLPLIEETHPYLVRLFLPNYIAESLQIIQQIPFLPFLYLMLGYGIFIRYKLPKDRLVRFNIMYGIIIISFQGIIHELFLNFTKIFCFDSTDRSEAALLTFLGWVLIFIPCFLRALFGKYESNPFLREAIEVHLGRDGPDFVWWDR 215          
BLAST of mRNA_E-siliculosus-1a_F_contig12476.1540.1 vs. uniprot
Match: A0A8F0FAJ4_9PHAE (Uncharacterized protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAJ4_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 1.600e-77
Identity = 107/204 (52.45%), Postives = 155/204 (75.98%), Query Frame = 1
Query:   40 LEISLLIGFIFIAFILEQKFQFDKPKKWFIAFNALLFQRGFSALAYYVPYLDMINLHIPLLKDENPLVLRVFLPDFVADSIDLVQQIPFLTFVYISLGYGLFIRYKIPKDRFIRYNVMYSIMLISLQGIINDMFITFIETIILDSHIRSTITLVSFFLWLALYIPCFIRSFAGKYDENKFIREAVEVHLGRDGPDFIWWDKKRK 651
            +EI + + F  +AF+LE+K    KPKKWF+AFN+L+ QR FS +AYYVPYLD++N H+PLL+ + P  +R+FLP+F+ DSI+++Q+IPFL+F Y+ + YG+ +RYKIPKDR +R+NVMY +++IS QGI +++++    T I D   ++   L++  LWL + IPCF R+  G+Y  N F+REA+EVHLGRDGPDFIWWD+ RK
Sbjct:    1 MEIFIFLLFFGLAFLLEKKLNIKKPKKWFVAFNSLICQRVFSVMAYYVPYLDILNTHVPLLQKQYPFFIRLFLPNFILDSINIIQKIPFLSFFYLLVAYGILVRYKIPKDRLVRFNVMYGVLIISFQGIFHELWLLITGTFIPDPQQKAESALLALILWLIVMIPCFTRALFGRYTRNFFMREAIEVHLGRDGPDFIWWDRTRK 204          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12476.1540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D1J783_ECTSI1.570e-15199.09Uncharacterized protein Escp124 n=1 Tax=Ectocarpus... [more]
A0A5A4MJ83_9PHAE1.150e-11370.23Uncharacterized protein n=4 Tax=Scytosiphonaceae T... [more]
A0A1I9LVT6_9PHAE1.280e-11069.30Uncharacterized protein n=1 Tax=Pleurocladia lacus... [more]
A0A6B7EVD7_9PHAE1.220e-10868.37Uncharacterized protein n=1 Tax=Cladosiphon okamur... [more]
A0A8F0F7K9_9PHAE5.850e-8955.41Uncharacterized protein n=2 Tax=Laminariales TaxID... [more]
A0A8F0JYW7_9PHAE2.320e-8755.50Uncharacterized protein n=1 Tax=Chorda asiatica Ta... [more]
A0A0S0G9V7_COSCS4.510e-8650.70Uncharacterized protein n=24 Tax=Laminariales TaxI... [more]
A0A141BSC7_9PHAE5.740e-8452.15Orf219 n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1... [more]
A0A2R4QPT5_9PHAE9.310e-8452.15Hypothetical chloroplast protein n=3 Tax=Fucaceae ... [more]
A0A8F0FAJ4_9PHAE1.600e-7752.45Uncharacterized protein n=1 Tax=Desmarestia aculea... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12476contigE-siliculosus-1a_F_contig12476:526..1185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size660
Model size660
Exons1
Hectar predicted targeting categorysignal anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927769.1361356-CDS-E-siliculosus-1a_F_contig12476:525..11851622927769.1361356-CDS-E-siliculosus-1a_F_contig12476:525..1185Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12476 526..1185 +
1696318672.3612268-CDS-E-siliculosus-1a_F_contig12476:525..11851696318672.3612268-CDS-E-siliculosus-1a_F_contig12476:525..1185Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12476 526..1185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12476.1540.1prot_E-siliculosus-1a_F_contig12476.1540.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12476 526..1185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12476.1540.1

>prot_E-siliculosus-1a_F_contig12476.1540.1 ID=prot_E-siliculosus-1a_F_contig12476.1540.1|Name=mRNA_E-siliculosus-1a_F_contig12476.1540.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=220bp
MIETLKILFSIYRLEISLLIGFIFIAFILEQKFQFDKPKKWFIAFNALLF
QRGFSALAYYVPYLDMINLHIPLLKDENPLVLRVFLPDFVADSIDLVQQI
PFLTFVYISLGYGLFIRYKIPKDRFIRYNVMYSIMLISLQGIINDMFITF
IETIILDSHIRSTITLVSFFLWLALYIPCFIRSFAGKYDENKFIREAVEV
HLGRDGPDFIWWDKKRKGD*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig12476:526..1185+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12476.1540.1 ID=mRNA_E-siliculosus-1a_F_contig12476.1540.1|Name=mRNA_E-siliculosus-1a_F_contig12476.1540.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=660bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12476:526..1185+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATAGAAACTCTTAAGATATTGTTCAGTATATATAGGTTAGAAATTAG TCTTTTGATTGGATTTATATTTATAGCATTTATTTTAGAACAAAAATTTC AATTTGACAAACCTAAAAAATGGTTTATAGCTTTTAACGCTTTACTTTTT CAACGAGGGTTCTCCGCACTCGCATATTATGTGCCCTATTTAGATATGAT TAATCTACATATACCGTTACTAAAGGATGAGAATCCTCTTGTTTTGAGAG TCTTCTTACCAGACTTTGTAGCAGATTCTATTGATCTTGTACAACAAATT CCATTTTTAACTTTTGTGTATATATCTCTAGGGTACGGGTTGTTTATACG TTATAAAATACCTAAGGATAGATTTATAAGATATAATGTTATGTATAGCA TTATGCTAATATCTTTACAAGGTATTATTAATGATATGTTTATTACGTTT ATAGAAACTATTATTTTAGATAGTCATATTCGATCAACTATAACTTTAGT ATCTTTTTTTCTTTGGTTAGCCTTATATATACCCTGCTTTATAAGATCTT TTGCTGGTAAATATGATGAAAATAAATTTATTAGAGAAGCGGTGGAAGTA CATTTAGGTAGAGATGGACCCGATTTTATTTGGTGGGATAAGAAAAGAAA AGGTGACTAA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12476:526..1185+

>mRNA_E-siliculosus-1a_F_contig12476.1540.1 ID=mRNA_E-siliculosus-1a_F_contig12476.1540.1|Name=mRNA_E-siliculosus-1a_F_contig12476.1540.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1320bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12476:526..1185+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATAGAAACTCTTAAGATATTGTTCAGTATATATAGGTTAGAAATTAG
TCTTTTGATTGGATTTATATTTATAGCATTTATTTTAGAACAAAAATTTC
AATTTGACAAACCTAAAAAATGGTTTATAGCTTTTAACGCTTTACTTTTT
CAACGAGGGTTCTCCGCACTCGCATATTATGTGCCCTATTTAGATATGAT
TAATCTACATATACCGTTACTAAAGGATGAGAATCCTCTTGTTTTGAGAG
TCTTCTTACCAGACTTTGTAGCAGATTCTATTGATCTTGTACAACAAATT
CCATTTTTAACTTTTGTGTATATATCTCTAGGGTACGGGTTGTTTATACG
TTATAAAATACCTAAGGATAGATTTATAAGATATAATGTTATGTATAGCA
TTATGCTAATATCTTTACAAGGTATTATTAATGATATGTTTATTACGTTT
ATAGAAACTATTATTTTAGATAGTCATATTCGATCAACTATAACTTTAGT
ATCTTTTTTTCTTTGGTTAGCCTTATATATACCCTGCTTTATAAGATCTT
TTGCTGGTAAATATGATGAAAATAAATTTATTAGAGAAGCGGTGGAAGTA
CATTTAGGTAGAGATGGACCCGATTTTATTTGGTGGGATAAGAAAAGAAA
AGGTGACTAAATGATAGAAACTCTTAAGATATTGTTCAGTATATATAGGT
TAGAAATTAGTCTTTTGATTGGATTTATATTTATAGCATTTATTTTAGAA
CAAAAATTTCAATTTGACAAACCTAAAAAATGGTTTATAGCTTTTAACGC
TTTACTTTTTCAACGAGGGTTCTCCGCACTCGCATATTATGTGCCCTATT
TAGATATGATTAATCTACATATACCGTTACTAAAGGATGAGAATCCTCTT
GTTTTGAGAGTCTTCTTACCAGACTTTGTAGCAGATTCTATTGATCTTGT
ACAACAAATTCCATTTTTAACTTTTGTGTATATATCTCTAGGGTACGGGT
TGTTTATACGTTATAAAATACCTAAGGATAGATTTATAAGATATAATGTT
ATGTATAGCATTATGCTAATATCTTTACAAGGTATTATTAATGATATGTT
TATTACGTTTATAGAAACTATTATTTTAGATAGTCATATTCGATCAACTA
TAACTTTAGTATCTTTTTTTCTTTGGTTAGCCTTATATATACCCTGCTTT
ATAAGATCTTTTGCTGGTAAATATGATGAAAATAAATTTATTAGAGAAGC
GGTGGAAGTACATTTAGGTAGAGATGGACCCGATTTTATTTGGTGGGATA
AGAAAAGAAAAGGTGACTAA
back to top