mRNA_E-siliculosus-1a_F_contig12464.1536.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12464.1536.1
Unique NamemRNA_E-siliculosus-1a_F_contig12464.1536.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 6.340e-41
Identity = 68/113 (60.18%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    1 HLDAATDAFVKAYVEERVRPDWVVTSPPYKYAFAILKQAMRVGRMGVAFKLRLTFLEPTKTRGRWLKENAPDRVVMLPRATYRGRGCSSTEAWFIWETGRGGEEGRKPVICFS 339
            HLDA ++ F   +  E  RPDW+VTSPPY  AF+IL +A+ V R+GVAFKLRL+FLEPTKTRG+WLK+N P  VV+LPRATY GR CSSTEAWFIW     G E       F 
Sbjct:   64 HLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWHLASDGVERPGQAFFFD 176          
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 6.380e-26
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1
Query:  133 MGVAFKLRLTFLEPTKTRGRWLKENAPDRVVMLPRATYRGRGCSSTEAWFIWET 294
            MGVAFKLRLTFL P K+RGRWLK+N PDR+VMLPRATYR R CSSTE WF+WET
Sbjct:    1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWET 54          
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Match: A0A252D8B1_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=A0A252D8B1_9NOSO)

HSP 1 Score: 84.0 bits (206), Expect = 9.620e-18
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:   19 DAFVKAYVEERVRPDWVVTSPPYKYAFAILKQAMRVGRMGVAFKLRLTFLEPTKTRGRWLKENAPDRVVMLPRATYRGRGC--SSTEAWFIWETGRGGEE 312
            DA    Y + +   DWVVT+PP+  A  IL +A     +GVAF LRL++LEP K RG+WL E+ P ++++LPR ++ G G   S T AW IW+ G   E+
Sbjct:   72 DATTHQYWQRQKPYDWVVTNPPFDSASKILPKAYEYASVGVAFLLRLSYLEPCKDRGQWLAEHPP-KLIVLPRISFTGDGKVDSCTCAWMIWKKGYSSED 170          
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Match: A0A6H5L5Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 6.080e-16
Identity = 40/73 (54.79%), Postives = 47/73 (64.38%), Query Frame = -3
Query:    1 PVRRIFL*PPPSGFGGLQKSQPQLEGYSHTPDPHRLLQNGEGVLVGWARHDPVRTHPFLDVRLDKRVCGGVQV 219
            PV      P PSGFGGL+KSQPQLE + HTP+P    QN EGVLV  ARHDP+R  PFL   + K V  G+ +
Sbjct:  164 PVAEAKHLPLPSGFGGLKKSQPQLECHPHTPNPQSTFQNSEGVLVWRARHDPLRAPPFLAEGIHKCVRRGIHM 236          
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.420e-13
Identity = 47/76 (61.84%), Postives = 51/76 (67.11%), Query Frame = -1
Query:    6 GSITTLSGAFSFSHRPLVLVGSRKVNLSLKATPIRPTRIACFKMAKAYL*GGLVTTQSGRTLSSTYALTNASVAAS 233
            G  T ++ A   SH PLVLVGSRKV+LSL ATP RP   A FK+AKA L GGLVTT SGR  SS    TN SV AS
Sbjct:  160 GMTTPVAEAKHLSHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGRRPSSQKVSTNVSVVAS 235          
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Match: A0A843RVX0_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Luteitalea sp. TaxID=2004800 RepID=A0A843RVX0_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 4.250e-12
Identity = 42/102 (41.18%), Postives = 58/102 (56.86%), Query Frame = 1
Query:    1 HLDAATDAFVKAYV-EERVRPDWVVTSPPYKYAFAILKQAMRVGRMGVAFKLRLTFLEPTKTRGRWLKENAPDRVVMLPRATYRGRGC--SSTEAWFIWETG 297
            HLDAA   + +        RP W VT+ P+  A AI+  A++      A  LRL++LEPT  R R+L  N P  V+++PR  ++GRG   S T AWF+WE G
Sbjct:   78 HLDAARSEYWRDIAGRTHNRPYWGVTNVPFDLADAIVPLAVQTLPC-FATILRLSWLEPTAARQRFLSANPPRTVIVMPRHDFKGRGQTDSVTSAWFVWEQG 178          
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 4.630e-11
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    1 HLDAATDAFVKAYVEERV--RPDWVVTSPPYKYAFAILKQAMRVGRMGVAFKLRLTFLEPTKTRGRWLKENAPDRVVML 231
            +LDA+  +F   ++  +   RPDWV+TSPPYK A   +K A+ +   GVA KL L+FLEP   RG WL+ N P   V  
Sbjct:  143 NLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221          
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Match: UPI000E0E050B (SAM-dependent DNA methyltransferase n=2 Tax=Microvirga TaxID=186650 RepID=UPI000E0E050B)

HSP 1 Score: 64.7 bits (156), Expect = 6.880e-10
Identity = 45/125 (36.00%), Postives = 64/125 (51.20%), Query Frame = 1
Query:    1 HLDAATDAFVKAYVEERVRPDWVVTSPPYKYAFAILKQAMRVGRMGVAFKLRLTFLEPTKTRGRWLKENAPDRVVMLPRATYRGRGC----------SSTEAWFIWETGRGGEEGRKPVICFSLP 345
            HLDA  D F KA     +  DWV+T+PP+ +A+  L+QAMR+ R GVAF +RL +LE +K R   L    P  VV +   T R   C          ++  AW++W     G+  R   + F +P
Sbjct:   84 HLDAQID-FTKADPNTAL-VDWVITNPPFDHAYEFLEQAMRIARRGVAFLVRLAWLE-SKGRYNSLWTQTPPSVVAV--FTERLPMCLGGWDPKLSTATAYAWYVWVRDEQGQWPRVQSLPFFIP 203          
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Match: A0A1V5ZCZ4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin179 TaxID=1852849 RepID=A0A1V5ZCZ4_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 1.030e-9
Identity = 36/90 (40.00%), Postives = 48/90 (53.33%), Query Frame = 1
Query:   61 DWVVTSPPYKYAFAILKQAMRVGRMGVAFKLRLTFLEPTKTRGRWLKENAPDRV---VMLPRATYR--------GRGCSS---TEAWFIW 288
            DWVVT+PP+  A  IL  AM   R+GVAF LRL+++EP  TR  WL   A   +    + PR  +R        G+   +   T AWF+W
Sbjct:   84 DWVVTNPPFSLAEDILANAMSYARVGVAFLLRLSYMEPVTTRAAWLNGYADKMIYQGALNPRPHFRKGEINPKTGKKYGTDNVTVAWFVW 173          
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Match: UPI001917D731 (hypothetical protein n=1 Tax=Brevundimonas aurantiaca TaxID=74316 RepID=UPI001917D731)

HSP 1 Score: 55.5 bits (132), Expect = 1.440e-6
Identity = 38/105 (36.19%), Postives = 50/105 (47.62%), Query Frame = 1
Query:   52 VRPDWVVTSPPYKYAFAILKQAMRVGRMGVAFKLRLTFLEPTKTRGRWLKEN-----AP--DRVVMLPRATYRGRGCSSTEAWFIWETGRGGEEGRKPVICFSLP 345
            +RPDW++T+PP+    A ++QA R  R GVA  LRL FLE    R R   E      AP  +RV M+          ++  AWFIW        G  P + F  P
Sbjct:  101 IRPDWIITNPPFVKGEAFVRQAWRRARRGVAMLLRLQFLEGA-ARYRLFHELPLHACAPFAERVPMVKGRWDPTASSATAYAWFIWLKPGVDGYGSGPGLSFIAP 204          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5K3H5_9PHAE6.340e-4160.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6T5_9PHAE6.380e-2681.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A252D8B1_9NOSO9.620e-1844.00Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG... [more]
A0A6H5L5Q9_9PHAE6.080e-1654.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6X2_9PHAE1.420e-1361.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A843RVX0_9BACT4.250e-1241.18Uncharacterized protein (Fragment) n=1 Tax=Luteita... [more]
D7FJU4_ECTSI4.630e-1144.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI000E0E050B6.880e-1036.00SAM-dependent DNA methyltransferase n=2 Tax=Microv... [more]
A0A1V5ZCZ4_9BACT1.030e-940.00Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
UPI001917D7311.440e-636.19hypothetical protein n=1 Tax=Brevundimonas auranti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12464contigE-siliculosus-1a_F_contig12464:2..393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size243
Model size392
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12464.1536.1prot_E-siliculosus-1a_F_contig12464.1536.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12464 119..361 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927768.355738-UTR-E-siliculosus-1a_F_contig12464:1..1181622927768.355738-UTR-E-siliculosus-1a_F_contig12464:1..118Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12464 2..118 +
1696318671.909077-UTR-E-siliculosus-1a_F_contig12464:1..1181696318671.909077-UTR-E-siliculosus-1a_F_contig12464:1..118Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12464 2..118 +
1622927768.3854742-UTR-E-siliculosus-1a_F_contig12464:361..3931622927768.3854742-UTR-E-siliculosus-1a_F_contig12464:361..393Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12464 362..393 +
1696318671.9367347-UTR-E-siliculosus-1a_F_contig12464:361..3931696318671.9367347-UTR-E-siliculosus-1a_F_contig12464:361..393Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12464 362..393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927768.369459-CDS-E-siliculosus-1a_F_contig12464:118..3611622927768.369459-CDS-E-siliculosus-1a_F_contig12464:118..361Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12464 119..361 +
1696318671.926816-CDS-E-siliculosus-1a_F_contig12464:118..3611696318671.926816-CDS-E-siliculosus-1a_F_contig12464:118..361Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12464 119..361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12464.1536.1

>prot_E-siliculosus-1a_F_contig12464.1536.1 ID=prot_E-siliculosus-1a_F_contig12464.1536.1|Name=mRNA_E-siliculosus-1a_F_contig12464.1536.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=81bp
MRVGRMGVAFKLRLTFLEPTKTRGRWLKENAPDRVVMLPRATYRGRGCSS
TEAWFIWETGRGGEEGRKPVICFSLPDGAL*
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mRNA from alignment at E-siliculosus-1a_F_contig12464:2..393+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12464.1536.1 ID=mRNA_E-siliculosus-1a_F_contig12464.1536.1|Name=mRNA_E-siliculosus-1a_F_contig12464.1536.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=392bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12464:2..393+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACCTGGACGCCGCCACAGACGCGTTTGTCAAGGCGTACGTCGAGGAAAG GGTGCGTCCGGACTGGGTCGTGACGAGCCCACCCTACAAGTACGCCTTCG CCATTTTGAAGCAGGCGATGCGGGTCGGGCGTATGGGAGTAGCCTTCAAG CTGAGGTTGACTTTTCTGGAGCCCACCAAAACCAGAGGGCGGTGGCTAAA GGAAAATGCGCCTGACAGGGTTGTGATGCTCCCGCGCGCTACGTACCGCG GAAGAGGATGTAGCTCTACTGAGGCGTGGTTTATATGGGAGACAGGGCGG GGTGGCGAGGAAGGCCGCAAGCCTGTGATTTGCTTTTCCTTGCCTGACGG TGCTCTCTAGAATTGTAGGACCTAGGTGTGCTTGTGTGAAGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12464:2..393+

>mRNA_E-siliculosus-1a_F_contig12464.1536.1 ID=mRNA_E-siliculosus-1a_F_contig12464.1536.1|Name=mRNA_E-siliculosus-1a_F_contig12464.1536.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=486bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12464:2..393+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGGGTCGGGCGTATGGGAGTAGCCTTCAAGCTGAGGTTGACTTTTCT
GGAGCCCACCAAAACCAGAGGGCGGTGGCTAAAGGAAAATGCGCCTGACA
GGGTTGTGATGCTCCCGCGCGCTACGTACCGCGGAAGAGGATGTAGCTCT
ACTGAGGCGTGGTTTATATGGGAGACAGGGCGGGGTGGCGAGGAAGGCCG
CAAGCCTGTGATTTGCTTTTCCTTGCCTGACGGTGCTCTCTAGATGCGGG
TCGGGCGTATGGGAGTAGCCTTCAAGCTGAGGTTGACTTTTCTGGAGCCC
ACCAAAACCAGAGGGCGGTGGCTAAAGGAAAATGCGCCTGACAGGGTTGT
GATGCTCCCGCGCGCTACGTACCGCGGAAGAGGATGTAGCTCTACTGAGG
CGTGGTTTATATGGGAGACAGGGCGGGGTGGCGAGGAAGGCCGCAAGCCT
GTGATTTGCTTTTCCTTGCCTGACGGTGCTCTCTAG
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