mRNA_E-siliculosus-1a_F_contig12464.1536.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE) HSP 1 Score: 143 bits (360), Expect = 6.340e-41 Identity = 68/113 (60.18%), Postives = 80/113 (70.80%), Query Frame = 1
Query: 1 HLDAATDAFVKAYVEERVRPDWVVTSPPYKYAFAILKQAMRVGRMGVAFKLRLTFLEPTKTRGRWLKENAPDRVVMLPRATYRGRGCSSTEAWFIWETGRGGEEGRKPVICFS 339
HLDA ++ F + E RPDW+VTSPPY AF+IL +A+ V R+GVAFKLRL+FLEPTKTRG+WLK+N P VV+LPRATY GR CSSTEAWFIW G E F
Sbjct: 64 HLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWHLASDGVERPGQAFFFD 176
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE) HSP 1 Score: 101 bits (251), Expect = 6.380e-26 Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1
Query: 133 MGVAFKLRLTFLEPTKTRGRWLKENAPDRVVMLPRATYRGRGCSSTEAWFIWET 294
MGVAFKLRLTFL P K+RGRWLK+N PDR+VMLPRATYR R CSSTE WF+WET
Sbjct: 1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWET 54
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Match: A0A252D8B1_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=A0A252D8B1_9NOSO) HSP 1 Score: 84.0 bits (206), Expect = 9.620e-18 Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query: 19 DAFVKAYVEERVRPDWVVTSPPYKYAFAILKQAMRVGRMGVAFKLRLTFLEPTKTRGRWLKENAPDRVVMLPRATYRGRGC--SSTEAWFIWETGRGGEE 312
DA Y + + DWVVT+PP+ A IL +A +GVAF LRL++LEP K RG+WL E+ P ++++LPR ++ G G S T AW IW+ G E+
Sbjct: 72 DATTHQYWQRQKPYDWVVTNPPFDSASKILPKAYEYASVGVAFLLRLSYLEPCKDRGQWLAEHPP-KLIVLPRISFTGDGKVDSCTCAWMIWKKGYSSED 170
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Match: A0A6H5L5Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q9_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 6.080e-16 Identity = 40/73 (54.79%), Postives = 47/73 (64.38%), Query Frame = -3
Query: 1 PVRRIFL*PPPSGFGGLQKSQPQLEGYSHTPDPHRLLQNGEGVLVGWARHDPVRTHPFLDVRLDKRVCGGVQV 219
PV P PSGFGGL+KSQPQLE + HTP+P QN EGVLV ARHDP+R PFL + K V G+ +
Sbjct: 164 PVAEAKHLPLPSGFGGLKKSQPQLECHPHTPNPQSTFQNSEGVLVWRARHDPLRAPPFLAEGIHKCVRRGIHM 236
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 1.420e-13 Identity = 47/76 (61.84%), Postives = 51/76 (67.11%), Query Frame = -1
Query: 6 GSITTLSGAFSFSHRPLVLVGSRKVNLSLKATPIRPTRIACFKMAKAYL*GGLVTTQSGRTLSSTYALTNASVAAS 233
G T ++ A SH PLVLVGSRKV+LSL ATP RP A FK+AKA L GGLVTT SGR SS TN SV AS
Sbjct: 160 GMTTPVAEAKHLSHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGRRPSSQKVSTNVSVVAS 235
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Match: A0A843RVX0_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Luteitalea sp. TaxID=2004800 RepID=A0A843RVX0_9BACT) HSP 1 Score: 69.3 bits (168), Expect = 4.250e-12 Identity = 42/102 (41.18%), Postives = 58/102 (56.86%), Query Frame = 1
Query: 1 HLDAATDAFVKAYV-EERVRPDWVVTSPPYKYAFAILKQAMRVGRMGVAFKLRLTFLEPTKTRGRWLKENAPDRVVMLPRATYRGRGC--SSTEAWFIWETG 297
HLDAA + + RP W VT+ P+ A AI+ A++ A LRL++LEPT R R+L N P V+++PR ++GRG S T AWF+WE G
Sbjct: 78 HLDAARSEYWRDIAGRTHNRPYWGVTNVPFDLADAIVPLAVQTLPC-FATILRLSWLEPTAARQRFLSANPPRTVIVMPRHDFKGRGQTDSVTSAWFVWEQG 178
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 67.4 bits (163), Expect = 4.630e-11 Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 1
Query: 1 HLDAATDAFVKAYVEERV--RPDWVVTSPPYKYAFAILKQAMRVGRMGVAFKLRLTFLEPTKTRGRWLKENAPDRVVML 231
+LDA+ +F ++ + RPDWV+TSPPYK A +K A+ + GVA KL L+FLEP RG WL+ N P V
Sbjct: 143 NLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Match: UPI000E0E050B (SAM-dependent DNA methyltransferase n=2 Tax=Microvirga TaxID=186650 RepID=UPI000E0E050B) HSP 1 Score: 64.7 bits (156), Expect = 6.880e-10 Identity = 45/125 (36.00%), Postives = 64/125 (51.20%), Query Frame = 1
Query: 1 HLDAATDAFVKAYVEERVRPDWVVTSPPYKYAFAILKQAMRVGRMGVAFKLRLTFLEPTKTRGRWLKENAPDRVVMLPRATYRGRGC----------SSTEAWFIWETGRGGEEGRKPVICFSLP 345
HLDA D F KA + DWV+T+PP+ +A+ L+QAMR+ R GVAF +RL +LE +K R L P VV + T R C ++ AW++W G+ R + F +P
Sbjct: 84 HLDAQID-FTKADPNTAL-VDWVITNPPFDHAYEFLEQAMRIARRGVAFLVRLAWLE-SKGRYNSLWTQTPPSVVAV--FTERLPMCLGGWDPKLSTATAYAWYVWVRDEQGQWPRVQSLPFFIP 203
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Match: A0A1V5ZCZ4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin179 TaxID=1852849 RepID=A0A1V5ZCZ4_9BACT) HSP 1 Score: 63.5 bits (153), Expect = 1.030e-9 Identity = 36/90 (40.00%), Postives = 48/90 (53.33%), Query Frame = 1
Query: 61 DWVVTSPPYKYAFAILKQAMRVGRMGVAFKLRLTFLEPTKTRGRWLKENAPDRV---VMLPRATYR--------GRGCSS---TEAWFIW 288
DWVVT+PP+ A IL AM R+GVAF LRL+++EP TR WL A + + PR +R G+ + T AWF+W
Sbjct: 84 DWVVTNPPFSLAEDILANAMSYARVGVAFLLRLSYMEPVTTRAAWLNGYADKMIYQGALNPRPHFRKGEINPKTGKKYGTDNVTVAWFVW 173
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Match: UPI001917D731 (hypothetical protein n=1 Tax=Brevundimonas aurantiaca TaxID=74316 RepID=UPI001917D731) HSP 1 Score: 55.5 bits (132), Expect = 1.440e-6 Identity = 38/105 (36.19%), Postives = 50/105 (47.62%), Query Frame = 1
Query: 52 VRPDWVVTSPPYKYAFAILKQAMRVGRMGVAFKLRLTFLEPTKTRGRWLKEN-----AP--DRVVMLPRATYRGRGCSSTEAWFIWETGRGGEEGRKPVICFSLP 345
+RPDW++T+PP+ A ++QA R R GVA LRL FLE R R E AP +RV M+ ++ AWFIW G P + F P
Sbjct: 101 IRPDWIITNPPFVKGEAFVRQAWRRARRGVAMLLRLQFLEGA-ARYRLFHELPLHACAPFAERVPMVKGRWDPTASSATAYAWFIWLKPGVDGYGSGPGLSFIAP 204 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12464.1536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig12464.1536.1 >prot_E-siliculosus-1a_F_contig12464.1536.1 ID=prot_E-siliculosus-1a_F_contig12464.1536.1|Name=mRNA_E-siliculosus-1a_F_contig12464.1536.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=81bp MRVGRMGVAFKLRLTFLEPTKTRGRWLKENAPDRVVMLPRATYRGRGCSSback to top mRNA from alignment at E-siliculosus-1a_F_contig12464:2..393+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig12464.1536.1 ID=mRNA_E-siliculosus-1a_F_contig12464.1536.1|Name=mRNA_E-siliculosus-1a_F_contig12464.1536.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=392bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12464:2..393+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12464:2..393+ >mRNA_E-siliculosus-1a_F_contig12464.1536.1 ID=mRNA_E-siliculosus-1a_F_contig12464.1536.1|Name=mRNA_E-siliculosus-1a_F_contig12464.1536.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=486bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12464:2..393+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |