mRNA_E-siliculosus-1a_F_contig1246.1535.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1246.1535.1
Unique NamemRNA_E-siliculosus-1a_F_contig1246.1535.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1246.1535.1 vs. uniprot
Match: A0A6H5KUS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS3_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 1.040e-53
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 1
Query:    1 IPSERPDPSKPHPRLGVGQIMSWSVDGRYLATRNDNMASALWVWDAEDLSLSSVVVQMESVRSAKWCPTRYTLAICTGNHHVYLWSP 261
            IPSERPDPSKP+PRLGVGQIMSWSVDGRYLATRNDNMASALWVWDAEDLSLSSVVVQMESVRSAKWCPTRY LAICTGNHHVYLWSP
Sbjct:  383 IPSERPDPSKPNPRLGVGQIMSWSVDGRYLATRNDNMASALWVWDAEDLSLSSVVVQMESVRSAKWCPTRYKLAICTGNHHVYLWSP 469          
BLAST of mRNA_E-siliculosus-1a_F_contig1246.1535.1 vs. uniprot
Match: D8LDM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM7_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 5.360e-30
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1
Query:    1 IPSERPDPSKPHPRLGVGQIMSWSVDGRYLATRNDNMASALWVWDAEDLSLSSVVVQ 171
            IPSERPDPSKPHPRLGVGQIMSWSVDGRYLATRNDNMASALWVWD EDLSLSSVVVQ
Sbjct:  288 IPSERPDPSKPHPRLGVGQIMSWSVDGRYLATRNDNMASALWVWDTEDLSLSSVVVQ 344          
BLAST of mRNA_E-siliculosus-1a_F_contig1246.1535.1 vs. uniprot
Match: A0A7S2Y1Z6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1Z6_9STRA)

HSP 1 Score: 108 bits (271), Expect = 6.390e-27
Identity = 49/81 (60.49%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   16 PDPSKPHPRLGVGQIMSWSVDGRYLATRNDNMASALWVWDAEDLSLSSVVVQMESVRSAKWCPTRYTLAICTGNHHVYLWS 258
            PDP K  PRLGVGQ M WS DGRYLATRNDNM + LW+WD   + L SV V ++ +RS KW P   TLA+C+GN  VYLW 
Sbjct:  185 PDPRKADPRLGVGQ-MGWSHDGRYLATRNDNMPTTLWIWDTHSVGLLSVAVFLDPIRSFKWSPNTATLALCSGNQRVYLWK 264          
BLAST of mRNA_E-siliculosus-1a_F_contig1246.1535.1 vs. uniprot
Match: A0A6A7G2L0_9CRUS (WD repeat-containing protein WRAP73-like (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G2L0_9CRUS)

HSP 1 Score: 106 bits (264), Expect = 1.440e-25
Identity = 48/86 (55.81%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    1 IPSERPDPSKPHPRLGVGQIMSWSVDGRYLATRNDNMASALWVWDAEDLSLSSVVVQMESVRSAKWCPTRYTLAICTGNHHVYLWS 258
            IP+   DP KP+P++GVG + SWS D R+L T+NDNM +ALW+WD   LSLSSV+ Q ESV+ A+W PT+  LA C GN + YLW+
Sbjct:  233 IPTITVDPEKPNPKIGVGSV-SWSSDDRFLCTKNDNMPNALWIWDLRKLSLSSVMFQHESVKVARWDPTKPRLAFCCGNGNFYLWT 317          
BLAST of mRNA_E-siliculosus-1a_F_contig1246.1535.1 vs. uniprot
Match: A0A2B4SSG9_STYPI (WD repeat-containing protein WRAP73 n=2 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SSG9_STYPI)

HSP 1 Score: 105 bits (262), Expect = 6.890e-25
Identity = 46/87 (52.87%), Postives = 66/87 (75.86%), Query Frame = 1
Query:    1 IPSERPDPSKPHPRLGVGQIMSWSVDGRYLATRNDNMASALWVWDAEDLSLSSVVVQMESVRSAKWCPTRYTLAICTGNHHVYLWSP 261
            +P  +PDP K +P+LGVG + ++S D RYLAT+NDNM +ALW+WD   L LS++++Q  SVR+ +W P +  LA+CTGN+ +YLWSP
Sbjct:  310 VPILKPDPEKANPKLGVGHV-AFSQDNRYLATKNDNMPNALWLWDVSKLCLSALLLQTSSVRAFQWDPKQPRLAVCTGNNKLYLWSP 395          
BLAST of mRNA_E-siliculosus-1a_F_contig1246.1535.1 vs. uniprot
Match: UPI00077A880C (WD repeat-containing protein WRAP73-like n=2 Tax=Acropora TaxID=6127 RepID=UPI00077A880C)

HSP 1 Score: 105 bits (262), Expect = 6.890e-25
Identity = 45/87 (51.72%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    1 IPSERPDPSKPHPRLGVGQIMSWSVDGRYLATRNDNMASALWVWDAEDLSLSSVVVQMESVRSAKWCPTRYTLAICTGNHHVYLWSP 261
            +PS +PDP KP+P+LGVGQI ++S D RYLAT+NDNM +A+W+WD   L L+++++Q + V++ +W P +  LAICT N+ +Y+WSP
Sbjct:  310 VPSVKPDPEKPNPKLGVGQI-AFSGDNRYLATKNDNMPNAVWLWDVSKLCLAALLLQSKPVKAFQWDPKQPRLAICTANNKLYMWSP 395          
BLAST of mRNA_E-siliculosus-1a_F_contig1246.1535.1 vs. uniprot
Match: UPI001FB65324 (WD repeat-containing protein WRAP73 isoform X2 n=2 Tax=Mugil cephalus TaxID=48193 RepID=UPI001FB65324)

HSP 1 Score: 103 bits (258), Expect = 1.510e-24
Identity = 47/87 (54.02%), Postives = 64/87 (73.56%), Query Frame = 1
Query:    1 IPSERPDPSKPHPRLGVGQIMSWSVDGRYLATRNDNMASALWVWDAEDLSLSSVVVQMESVRSAKWCPTRYTLAICTGNHHVYLWSP 261
            IP  +PDP + +P++GV  I+++S D RYLATRNDNMA+A+WVWD + +SL +V+ Q   VR  +W P R  LA+CTGN  +YLWSP
Sbjct:  253 IPVVKPDPDRANPKIGVS-IVAFSSDSRYLATRNDNMATAVWVWDMQKMSLEAVLEQTSGVRCLQWDPRRPRLALCTGNTKLYLWSP 338          
BLAST of mRNA_E-siliculosus-1a_F_contig1246.1535.1 vs. uniprot
Match: UPI001454F561 (WD repeat-containing protein WRAP73-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001454F561)

HSP 1 Score: 104 bits (259), Expect = 1.990e-24
Identity = 44/87 (50.57%), Postives = 67/87 (77.01%), Query Frame = 1
Query:    1 IPSERPDPSKPHPRLGVGQIMSWSVDGRYLATRNDNMASALWVWDAEDLSLSSVVVQMESVRSAKWCPTRYTLAICTGNHHVYLWSP 261
            IP  +PDP K +P++GVGQ+ S+S D RY+A++NDNM +ALW+WD + LS + +++Q+ S+R  +W P +  LAICTGN+ +Y+WSP
Sbjct:  321 IPVVKPDPDKANPKVGVGQL-SFSPDNRYMASKNDNMPNALWIWDVQKLSQAVLLLQVNSIRCIQWDPHKSRLAICTGNNKLYMWSP 406          
BLAST of mRNA_E-siliculosus-1a_F_contig1246.1535.1 vs. uniprot
Match: A0A1A7Y4C4_9TELE (WD repeat containing, antisense to TP73 (Fragment) n=1 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7Y4C4_9TELE)

HSP 1 Score: 100 bits (249), Expect = 2.480e-24
Identity = 44/87 (50.57%), Postives = 64/87 (73.56%), Query Frame = 1
Query:    1 IPSERPDPSKPHPRLGVGQIMSWSVDGRYLATRNDNMASALWVWDAEDLSLSSVVVQMESVRSAKWCPTRYTLAICTGNHHVYLWSP 261
            IP  +PDP + +P++GV  ++++S D RYLAT+NDNMA+A+WVWD + +SL +V+ Q  +VR  +W P    LA+CTGN  +YLWSP
Sbjct:   98 IPVVKPDPDRANPKIGVS-VLAFSSDSRYLATKNDNMATAVWVWDMQKMSLEAVLEQTAAVRCFQWDPKHPRLALCTGNGKLYLWSP 183          
BLAST of mRNA_E-siliculosus-1a_F_contig1246.1535.1 vs. uniprot
Match: A0A7M7NXM6_STRPU (Uncharacterized protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7NXM6_STRPU)

HSP 1 Score: 103 bits (257), Expect = 3.810e-24
Identity = 42/87 (48.28%), Postives = 69/87 (79.31%), Query Frame = 1
Query:    1 IPSERPDPSKPHPRLGVGQIMSWSVDGRYLATRNDNMASALWVWDAEDLSLSSVVVQMESVRSAKWCPTRYTLAICTGNHHVYLWSP 261
            +PS +PDP K +P++G+  ++S+S D R++ ++NDNM +ALW+WD + LS +++++Q+ SVR+AKW P R  LA+CTG++ +YLWSP
Sbjct:  315 LPSIKPDPDKANPKIGIS-LLSFSPDNRFMLSKNDNMPNALWIWDVQKLSQAAMLLQVGSVRAAKWDPCRARLAVCTGSNKLYLWSP 400          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1246.1535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUS3_9PHAE1.040e-5397.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDM7_ECTSI5.360e-3098.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2Y1Z6_9STRA6.390e-2760.49Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6A7G2L0_9CRUS1.440e-2555.81WD repeat-containing protein WRAP73-like (Fragment... [more]
A0A2B4SSG9_STYPI6.890e-2552.87WD repeat-containing protein WRAP73 n=2 Tax=Pocill... [more]
UPI00077A880C6.890e-2551.72WD repeat-containing protein WRAP73-like n=2 Tax=A... [more]
UPI001FB653241.510e-2454.02WD repeat-containing protein WRAP73 isoform X2 n=2... [more]
UPI001454F5611.990e-2450.57WD repeat-containing protein WRAP73-like n=1 Tax=A... [more]
A0A1A7Y4C4_9TELE2.480e-2450.57WD repeat containing, antisense to TP73 (Fragment)... [more]
A0A7M7NXM6_STRPU3.810e-2448.28Uncharacterized protein n=2 Tax=Echinacea TaxID=76... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1246contigE-siliculosus-1a_F_contig1246:34205..35149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size261
Model size261
Exons2
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EggNOG OGsKOG4497@1,KOG4497@2759
EggNOG free text desc.positive regulation of non-motile cilium assembly
Seed eggNOG ortholog2880.D8LDM7
Seed ortholog evalue6.4e-25
Seed ortholog score119.8
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927768.3072207-CDS-E-siliculosus-1a_F_contig1246:34204..342941622927768.3072207-CDS-E-siliculosus-1a_F_contig1246:34204..34294Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1246 34205..34294 -
1696318671.8877423-CDS-E-siliculosus-1a_F_contig1246:34204..342941696318671.8877423-CDS-E-siliculosus-1a_F_contig1246:34204..34294Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1246 34205..34294 -
1622927768.3214343-CDS-E-siliculosus-1a_F_contig1246:34978..351491622927768.3214343-CDS-E-siliculosus-1a_F_contig1246:34978..35149Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1246 34979..35149 -
1696318671.8982859-CDS-E-siliculosus-1a_F_contig1246:34978..351491696318671.8982859-CDS-E-siliculosus-1a_F_contig1246:34978..35149Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1246 34979..35149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1246.1535.1prot_E-siliculosus-1a_F_contig1246.1535.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1246 34205..35149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1246.1535.1

>prot_E-siliculosus-1a_F_contig1246.1535.1 ID=prot_E-siliculosus-1a_F_contig1246.1535.1|Name=mRNA_E-siliculosus-1a_F_contig1246.1535.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=87bp
IPSERPDPSKPHPRLGVGQIMSWSVDGRYLATRNDNMASALWVWDAEDLS
LSSVVVQMESVRSAKWCPTRYTLAICTGNHHVYLWSP
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mRNA from alignment at E-siliculosus-1a_F_contig1246:34205..35149-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1246.1535.1 ID=mRNA_E-siliculosus-1a_F_contig1246.1535.1|Name=mRNA_E-siliculosus-1a_F_contig1246.1535.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=945bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1246:34205..35149- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATTCCCTCCGAGCGGCCGGACCCGTCCAAGCCGCACCCGCGGCTCGGGGT GGGGCAGATCATGTCGTGGAGCGTGGACGGGAGATACTTGGCCACGCGCA ACGACAACATGGCGTCGGCGCTGTGGGTGTGGGACGCGGAAGACCTGTCG CTGTCCTCCGTGGTTGTGCAGGTAATTTTTGGCACTATTGTACGCATACC GCCGTAGGTGTCATGACGTAAGATATCACACCCTCTGGACCGATTTTCAC GGTAGCCTTCGCAGCGTTTTTCGTATTGCGTAATTATGTTGGATAAAACG TTCAATCGGGGGAAGTTGGGTTAGGGTTAGCGAATAGGGTCTGCGTACCC CCTCCCTGTTCCATTTCCTCATTATCTCATTGTTCACGCGAAGGCGGTCA GATTTCAAAGCTCGGTTGCTCCGAGACGAGGAGGGTATGTATATCGAAGT CAATGTTTTCAGGAAGCTCTCTCTCGATGAGACAGTTCCAACGCCACCGC TTTCGGTACGCCCGCTCTATTCGGCTGTGGAATAGTTGAGCGGTGCAGAT TGGGTCCAACGGGGGGGGGGGGTGATGTCTTGTGTCACGTACGGCGCCTC TCGCCATGCGTGCACCGTATTTTGGTTTGCGTGTGCGTGGTACGGCGGTG GGGAGAGGGCTGGTGGGAGGCGTGCGTGTTGCCGTGCGGTGGGTTCTGTT TTGACGGGGCGTTTCACGTCGTTTCGTGTTGGTTGGTCAGTTTTTTGTGT TTTTTGAGTTGAGCTGCTGCCCTCAGACGTGACGCTTGTGATTTATCACA CGTTTTTGGTTGGTCTCTTCTTTTTAACCCCGAGCTCAAACTTTCTGCGC CACAGATGGAATCCGTGAGGTCGGCGAAGTGGTGCCCTACTCGGTACACG CTGGCCATCTGCACGGGAAACCACCACGTCTACTTGTGGAGCCCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1246:34205..35149-

>mRNA_E-siliculosus-1a_F_contig1246.1535.1 ID=mRNA_E-siliculosus-1a_F_contig1246.1535.1|Name=mRNA_E-siliculosus-1a_F_contig1246.1535.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=522bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1246:34205..35149- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATTCCCTCCGAGCGGCCGGACCCGTCCAAGCCGCACCCGCGGCTCGGGGT
GGGGCAGATCATGTCGTGGAGCGTGGACGGGAGATACTTGGCCACGCGCA
ACGACAACATGGCGTCGGCGCTGTGGGTGTGGGACGCGGAAGACCTGTCG
CTGTCCTCCGTGGTTGTGCAGATTCCCTCCGAGCGGCCGGACCCGTCCAA
GCCGCACCCGCGGCTCGGGGTGGGGCAGATCATGTCGTGGAGCGTGGACG
GGAGATACTTGGCCACGCGCAACGACAACATGGCGTCGGCGCTGTGGGTG
TGGGACGCGGAAGACCTGTCGCTGTCCTCCGTGGTTGTGCAGATGGAATC
CGTGAGGTCGGCGAAGTGGTGCCCTACTCGGTACACGCTGGCCATCTGCA
CGGGAAACCACCACGTCTACTTGTGGAGCCCGATGGAATCCGTGAGGTCG
GCGAAGTGGTGCCCTACTCGGTACACGCTGGCCATCTGCACGGGAAACCA
CCACGTCTACTTGTGGAGCCCG
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