mRNA_E-siliculosus-1a_F_contig12458.1531.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12458.1531.1
Unique NamemRNA_E-siliculosus-1a_F_contig12458.1531.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12458.1531.1 vs. uniprot
Match: A0A6H5JCX1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX1_9PHAE)

HSP 1 Score: 272 bits (696), Expect = 7.220e-86
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 1 
Query:    1 KAMDILEDFFTFRGYSYLRLDGATSSEEREKRMARFNAPDSPYFVFVLSTRAGGLGLNLATADTVILFDSDWNPMMDMQAQDRAHRIGQKHEVRVFRLVTDSPVEERIISRATDKLNMTGLVVEAGKFNRDSKAAERK 414
            +AMDILEDFFTFRGYSYLRLDGATSSEERE+RMARFNAPDSPYFVFVLSTRAGGLGLNLATADTVILFDSDWNPMMDMQAQDRAHRIGQKHEVRVFRLVTDSPVEERIISRATDKLNMTGLVVEAGKFNRDSKAAERK
Sbjct:  103 RAMDILEDFFTFRGYSYLRLDGATSSEERERRMARFNAPDSPYFVFVLSTRAGGLGLNLATADTVILFDSDWNPMMDMQAQDRAHRIGQKHEVRVFRLVTDSPVEERIISRATDKLNMTGLVVEAGKFNRDSKAAERK 240
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12458.1531.1 vs. uniprot
Match: G5AI53_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AI53_PHYSP)

HSP 1 Score: 223 bits (567), Expect = 1.520e-67
Identity = 106/138 (76.81%), Postives = 125/138 (90.58%), Query Frame = 1 
Query:    1 KAMDILEDFFTFRGYSYLRLDGATSSEEREKRMARFNAPDSPYFVFVLSTRAGGLGLNLATADTVILFDSDWNPMMDMQAQDRAHRIGQKHEVRVFRLVTDSPVEERIISRATDKLNMTGLVVEAGKFNRDSKAAERK 414
            + M +LED+F +RG+ YLRLDG+TS++ERE+RM  FNAPDSP+F+F+LSTRAGGLGLNLATADTVI+FDSDWNP MD QAQDRAHRIGQK+EVRVFRLVT+SPVEE+I+SRATDK+NM  LVVEAGKFN  SK AER+
Sbjct:   93 QLMHVLEDYFNYRGFRYLRLDGSTSADEREQRMFMFNAPDSPFFIFLLSTRAGGLGLNLATADTVIIFDSDWNPAMDAQAQDRAHRIGQKNEVRVFRLVTNSPVEEKILSRATDKMNMNNLVVEAGKFNNRSKEAERR 230
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12458.1531.1 vs. uniprot
Match: A0A7S3UZW3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZW3_HETAK)

HSP 1 Score: 221 bits (564), Expect = 1.030e-66
Identity = 108/137 (78.83%), Postives = 124/137 (90.51%), Query Frame = 1 
Query:    4 AMDILEDFFTFRGYSYLRLDGATSSEEREKRMARFNAPDSPYFVFVLSTRAGGLGLNLATADTVILFDSDWNPMMDMQAQDRAHRIGQKHEVRVFRLVTDSPVEERIISRATDKLNMTGLVVEAGKFNRDSKAAERK 414
             M +LED+F  RG ++LRLDG+TS+E+RE+RMARFNAPDSPYFVF+LSTRAGGLGLNLATADTV+LFDSDWNPMMD QAQDRAHRIGQK+EVRV RL T+SPVEE+I+SRAT+KLNM GLVVEAG FN+ SK  ERK
Sbjct:  387 VMGLLEDYFRLRGLAHLRLDGSTSAEDREQRMARFNAPDSPYFVFLLSTRAGGLGLNLATADTVVLFDSDWNPMMDAQAQDRAHRIGQKNEVRVLRLCTNSPVEEKILSRATEKLNMNGLVVEAGGFNKASKEHERK 523
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12458.1531.1 vs. uniprot
Match: A0A7S0TBJ1_9STRA (Hypothetical protein n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0TBJ1_9STRA)

HSP 1 Score: 215 bits (547), Expect = 1.660e-66
Identity = 102/137 (74.45%), Postives = 125/137 (91.24%), Query Frame = 1 
Query:    4 AMDILEDFFTFRGYSYLRLDGATSSEEREKRMARFNAPDSPYFVFVLSTRAGGLGLNLATADTVILFDSDWNPMMDMQAQDRAHRIGQKHEVRVFRLVTDSPVEERIISRATDKLNMTGLVVEAGKFNRDSKAAERK 414
            AMD+LE+F TFRG +YLRLDG+T ++ERE+R+A+FN P SP F+F+LSTRAGGLGLNLA+ADTV++FDSDWNPMMD QAQDRAHRIGQ+++VRVFRLV  +PVEERI++RATDKLNM  LVVEAGKFN+DS+A ER+
Sbjct:   86 AMDLLEEFLTFRGLNYLRLDGSTPADERERRVAKFNDPCSPTFLFLLSTRAGGLGLNLASADTVVIFDSDWNPMMDAQAQDRAHRIGQRNDVRVFRLVAAAPVEERILARATDKLNMNSLVVEAGKFNKDSRAHERR 222
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12458.1531.1 vs. uniprot
Match: A0A0W8DF76_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DF76_PHYNI)

HSP 1 Score: 216 bits (551), Expect = 1.040e-65
Identity = 103/131 (78.63%), Postives = 120/131 (91.60%), Query Frame = 1 
Query:   22 DFFTFRGYSYLRLDGATSSEEREKRMARFNAPDSPYFVFVLSTRAGGLGLNLATADTVILFDSDWNPMMDMQAQDRAHRIGQKHEVRVFRLVTDSPVEERIISRATDKLNMTGLVVEAGKFNRDSKAAERK 414
            D+F +RG+ YLRLDG+TS++ERE+RM  FNAPDSP+F+F+LSTRAGGLGLNLATADTVI+FDSDWNP MD QAQDRAHRIGQK+EVRVFRLVT+SPVEE+I+SRATDK+NM  LVVEAGKFN  SK AER+
Sbjct:   45 DYFNYRGFRYLRLDGSTSADEREQRMFMFNAPDSPFFIFLLSTRAGGLGLNLATADTVIIFDSDWNPAMDAQAQDRAHRIGQKNEVRVFRLVTNSPVEEKILSRATDKMNMNNLVVEAGKFNNKSKEAERR 175
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12458.1531.1 vs. uniprot
Match: A0A418DS26_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DS26_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.110e-65
Identity = 101/138 (73.19%), Postives = 125/138 (90.58%), Query Frame = 1 
Query:    1 KAMDILEDFFTFRGYSYLRLDGATSSEEREKRMARFNAPDSPYFVFVLSTRAGGLGLNLATADTVILFDSDWNPMMDMQAQDRAHRIGQKHEVRVFRLVTDSPVEERIISRATDKLNMTGLVVEAGKFNRDSKAAERK 414
            + M +LED+F +RG+ YLRLDG+TS++ERE+RM  FNAPDSPYF+F+LSTRAGGLGLNLATADTV++FDSDWNP MD QAQDRAHRIGQK+EVRVFRL+T+SP+EE+I+SRAT+KLNM  LVVEAGKF+  SK ++R+
Sbjct:  255 QLMHVLEDYFNYRGFRYLRLDGSTSADEREQRMFMFNAPDSPYFIFLLSTRAGGLGLNLATADTVVIFDSDWNPAMDAQAQDRAHRIGQKNEVRVFRLITNSPIEEKILSRATEKLNMNNLVVEAGKFHAKSKESDRR 392
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12458.1531.1 vs. uniprot
Match: K3WFG0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFG0_GLOUD)

HSP 1 Score: 224 bits (571), Expect = 2.380e-65
Identity = 107/138 (77.54%), Postives = 125/138 (90.58%), Query Frame = 1 
Query:    1 KAMDILEDFFTFRGYSYLRLDGATSSEEREKRMARFNAPDSPYFVFVLSTRAGGLGLNLATADTVILFDSDWNPMMDMQAQDRAHRIGQKHEVRVFRLVTDSPVEERIISRATDKLNMTGLVVEAGKFNRDSKAAERK 414
            + M +LED+F +RG+ YLRLDG+TS++ERE+RM  FNAPDSPYF+F+LSTRAGGLGLNLATADTVI+FDSDWNP MD QAQDRAHRIGQK+EVRVFRLVT+SPVEE+I+SRATDK+NM  LVVEAGKFN  SK AER+
Sbjct:  697 QLMHVLEDYFNYRGFRYLRLDGSTSADEREQRMFMFNAPDSPYFIFLLSTRAGGLGLNLATADTVIIFDSDWNPAMDAQAQDRAHRIGQKNEVRVFRLVTNSPVEEKILSRATDKMNMNNLVVEAGKFNNRSKEAERR 834
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12458.1531.1 vs. uniprot
Match: W2XSN0_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica CJ01A1 TaxID=1317063 RepID=W2XSN0_PHYPR)

HSP 1 Score: 223 bits (568), Expect = 2.880e-65
Identity = 106/138 (76.81%), Postives = 125/138 (90.58%), Query Frame = 1 
Query:    1 KAMDILEDFFTFRGYSYLRLDGATSSEEREKRMARFNAPDSPYFVFVLSTRAGGLGLNLATADTVILFDSDWNPMMDMQAQDRAHRIGQKHEVRVFRLVTDSPVEERIISRATDKLNMTGLVVEAGKFNRDSKAAERK 414
            + M +LED+F +RG+ YLRLDG+TS++ERE+RM  FNAPDSP+F+F+LSTRAGGLGLNLATADTVI+FDSDWNP MD QAQDRAHRIGQK+EVRVFRLVT+SPVEE+I+SRATDK+NM  LVVEAGKFN  SK AER+
Sbjct:  822 QLMHVLEDYFNYRGFRYLRLDGSTSADEREQRMFMFNAPDSPFFIFLLSTRAGGLGLNLATADTVIIFDSDWNPAMDAQAQDRAHRIGQKNEVRVFRLVTNSPVEEKILSRATDKMNMNNLVVEAGKFNNKSKEAERR 959
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12458.1531.1 vs. uniprot
Match: M4C5P4_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C5P4_HYAAE)

HSP 1 Score: 223 bits (567), Expect = 8.180e-65
Identity = 106/138 (76.81%), Postives = 125/138 (90.58%), Query Frame = 1 
Query:    1 KAMDILEDFFTFRGYSYLRLDGATSSEEREKRMARFNAPDSPYFVFVLSTRAGGLGLNLATADTVILFDSDWNPMMDMQAQDRAHRIGQKHEVRVFRLVTDSPVEERIISRATDKLNMTGLVVEAGKFNRDSKAAERK 414
            + M +LED+F +RG+ YLRLDG+TS++ERE+RM  FNAPDSP+F+F+LSTRAGGLGLNLATADTVI+FDSDWNP MD QAQDRAHRIGQK+EVRVFRLVT+SPVEE+I+SRATDK+NM  LVVEAGKFN  SK AER+
Sbjct:  709 QLMHVLEDYFNYRGFRYLRLDGSTSADEREQRMFMFNAPDSPFFIFLLSTRAGGLGLNLATADTVIIFDSDWNPAMDAQAQDRAHRIGQKNEVRVFRLVTNSPVEEKILSRATDKMNMNNLVVEAGKFNNRSKEAERR 846
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12458.1531.1 vs. uniprot
Match: A0A6G0P1J6_9STRA (Chromatin structure-remodeling complex subunit n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0P1J6_9STRA)

HSP 1 Score: 223 bits (567), Expect = 9.240e-65
Identity = 106/138 (76.81%), Postives = 125/138 (90.58%), Query Frame = 1 
Query:    1 KAMDILEDFFTFRGYSYLRLDGATSSEEREKRMARFNAPDSPYFVFVLSTRAGGLGLNLATADTVILFDSDWNPMMDMQAQDRAHRIGQKHEVRVFRLVTDSPVEERIISRATDKLNMTGLVVEAGKFNRDSKAAERK 414
            + M +LED+F +RG+ YLRLDG+TS++ERE+RM  FNAPDSP+F+F+LSTRAGGLGLNLATADTVI+FDSDWNP MD QAQDRAHRIGQK+EVRVFRLVT+SPVEE+I+SRATDK+NM  LVVEAGKFN  SK AER+
Sbjct:  809 QLMHVLEDYFNYRGFRYLRLDGSTSADEREQRMFMFNAPDSPFFIFLLSTRAGGLGLNLATADTVIIFDSDWNPAMDAQAQDRAHRIGQKNEVRVFRLVTNSPVEEKILSRATDKMNMNNLVVEAGKFNNRSKEAERR 946
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12458.1531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCX1_9PHAE7.220e-8698.55Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
G5AI53_PHYSP1.520e-6776.81Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A7S3UZW3_HETAK1.030e-6678.83Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0TBJ1_9STRA1.660e-6674.45Hypothetical protein n=1 Tax=Chrysocystis fragilis... [more]
A0A0W8DF76_PHYNI1.040e-6578.63Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
A0A418DS26_9STRA1.110e-6573.19Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
K3WFG0_GLOUD2.380e-6577.54Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
W2XSN0_PHYPR2.880e-6576.81Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
M4C5P4_HYAAE8.180e-6576.81Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A6G0P1J6_9STRA9.240e-6576.81Chromatin structure-remodeling complex subunit n=2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12458contigE-siliculosus-1a_F_contig12458:317..1425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size411
Model size417
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko03021,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelPythiales
COG Functional cat.BK
EggNOG OGs1ME4Q@121069,COG0553@1,KOG0386@2759
EggNOG free text desc.Chromatin structure-remodeling complex subunit snf21. Source PGD
GOsGO:0000003,GO:0000086,GO:0000122,GO:0000166,GO:0000182,GO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0000791,GO:0000792,GO:0000902,GO:0000904,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0000988,GO:0000990,GO:0000991,GO:0001012,GO:0001013,GO:0001046,GO:0001047,GO:0001067,GO:0001085,GO:0001101,GO:0001102,GO:0001163,GO:0001164,GO:0001188,GO:0001221,GO:0001223,GO:0001558,GO:0001568,GO:0001570,GO:0001654,GO:0001701,GO:0001709,GO:0001824,GO:0001832,GO:0001835,GO:0001889,GO:0001944,GO:0002009,GO:0002039,GO:0002064,GO:0002088,GO:0002165,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0003002,GO:0003006,GO:0003007,GO:0003151,GO:0003205,GO:0003206,GO:0003231,GO:0003279,GO:0003281,GO:0003407,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003690,GO:0003712,GO:0003713,GO:0003714,GO:0003824,GO:0004003,GO:0004386,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005719,GO:0005726,GO:0005730,GO:0005856,GO:0005975,GO:0005984,GO:0005985,GO:0005987,GO:0006066,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006302,GO:0006304,GO:0006305,GO:0006306,GO:0006310,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006337,GO:0006338,GO:0006342,GO:0006346,GO:0006351,GO:0006352,GO:0006354,GO:0006355,GO:0006356,GO:0006357,GO:0006360,GO:0006361,GO:0006366,GO:0006368,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006974,GO:0006996,GO:0007010,GO:0007049,GO:0007059,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007292,GO:0007346,GO:0007389,GO:0007399,GO:0007403,GO:0007406,GO:0007409,GO:0007417,GO:0007420,GO:0007423,GO:0007444,GO:0007472,GO:0007474,GO:0007476,GO:0007478,GO:0007480,GO:0007507,GO:0007552,GO:0007560,GO:0008026,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0008285,GO:0008544,GO:0008586,GO:0008587,GO:0009056,GO:0009058,GO:0009059,GO:0009266,GO:0009267,GO:0009311,GO:0009313,GO:0009408,GO:0009414,GO:0009415,GO:0009605,GO:0009628,GO:0009651,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009826,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009913,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010001,GO:0010015,GO:0010033,GO:0010035,GO:0010073,GO:0010074,GO:0010078,GO:0010154,GO:0010162,GO:0010231,GO:0010424,GO:0010431,GO:0010453,GO:0010455,GO:0010467,GO:0010468,GO:0010492,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010570,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010721,GO:0010810,GO:0010811,GO:0010941,GO:0010948,GO:0010959,GO:0015616,GO:0016043,GO:0016049,GO:0016052,GO:0016070,GO:0016358,GO:0016458,GO:0016462,GO:0016514,GO:0016569,GO:0016570,GO:0016573,GO:0016584,GO:0016586,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019221,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019899,GO:0019953,GO:0021700,GO:0021781,GO:0022008,GO:0022402,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0022611,GO:0022622,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030030,GO:0030097,GO:0030099,GO:0030111,GO:0030154,GO:0030155,GO:0030177,GO:0030182,GO:0030198,GO:0030216,GO:0030218,GO:0030308,GO:0030326,GO:0030334,GO:0030554,GO:0030855,GO:0030900,GO:0030902,GO:0030957,GO:0031055,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031347,GO:0031490,GO:0031491,GO:0031492,GO:0031494,GO:0031496,GO:0031497,GO:0031498,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032259,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032776,GO:0032879,GO:0032984,GO:0032986,GO:0032989,GO:0032990,GO:0032991,GO:0033143,GO:0033144,GO:0033554,GO:0033613,GO:0034097,GO:0034101,GO:0034198,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0034756,GO:0035060,GO:0035107,GO:0035108,GO:0035113,GO:0035114,GO:0035116,GO:0035120,GO:0035137,GO:0035172,GO:0035188,GO:0035218,GO:0035220,GO:0035239,GO:0035257,GO:0035258,GO:0035295,GO:0035639,GO:0035821,GO:0035886,GO:0035887,GO:0035904,GO:0036003,GO:0036094,GO:0036211,GO:0036335,GO:0038111,GO:0040007,GO:0040008,GO:0040011,GO:0040012,GO:0040029,GO:0042058,GO:0042063,GO:0042127,GO:0042148,GO:0042221,GO:0042330,GO:0042393,GO:0042592,GO:0042594,GO:0042623,GO:0042692,GO:0042766,GO:0042981,GO:0043009,GO:0043010,GO:0043044,GO:0043062,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043269,GO:0043388,GO:0043412,GO:0043414,GO:0043543,GO:0043565,GO:0043588,GO:0043618,GO:0043620,GO:0043696,GO:0043697,GO:0043900,GO:0043902,GO:0043903,GO:0043921,GO:0043923,GO:0043933,GO:0043966,GO:0043974,GO:0044085,GO:0044093,GO:0044107,GO:0044109,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044267,GO:0044271,GO:0044275,GO:0044281,GO:0044282,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044728,GO:0044770,GO:0044772,GO:0044839,GO:0044877,GO:0045088,GO:0045111,GO:0045165,GO:0045595,GO:0045596,GO:0045597,GO:0045742,GO:0045785,GO:0045786,GO:0045814,GO:0045892,GO:0045893,GO:0045926,GO:0045927,GO:0045930,GO:0045934,GO:0045935,GO:0045943,GO:0045944,GO:0046164,GO:0046352,GO:0046483,GO:0046782,GO:0047485,GO:0048232,GO:0048316,GO:0048364,GO:0048468,GO:0048477,GO:0048507,GO:0048513,GO:0048514,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048534,GO:0048562,GO:0048563,GO:0048568,GO:0048569,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0048598,GO:0048608,GO:0048609,GO:0048646,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048730,GO:0048731,GO:0048732,GO:0048736,GO:0048737,GO:0048812,GO:0048813,GO:0048844,GO:0048856,GO:0048858,GO:0048869,GO:0048872,GO:0050434,GO:0050681,GO:0050767,GO:0050768,GO:0050776,GO:0050789,GO:0050792,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051090,GO:0051091,GO:0051093,GO:0051094,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051145,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0051254,GO:0051270,GO:0051276,GO:0051321,GO:0051427,GO:0051702,GO:0051704,GO:0051716,GO:0051726,GO:0051817,GO:0051851,GO:0051960,GO:0051961,GO:0052312,GO:0052472,GO:0060037,GO:0060041,GO:0060173,GO:0060216,GO:0060255,GO:0060284,GO:0060318,GO:0060322,GO:0060343,GO:0060347,GO:0060429,GO:0060548,GO:0060560,GO:0060562,GO:0060765,GO:0060766,GO:0060840,GO:0060976,GO:0061008,GO:0061061,GO:0061383,GO:0061384,GO:0061412,GO:0061458,GO:0061564,GO:0061587,GO:0061626,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070182,GO:0070306,GO:0070307,GO:0070577,GO:0070603,GO:0070784,GO:0070786,GO:0070887,GO:0070897,GO:0070983,GO:0071103,GO:0071310,GO:0071345,GO:0071496,GO:0071564,GO:0071565,GO:0071684,GO:0071695,GO:0071704,GO:0071824,GO:0071840,GO:0072091,GO:0072358,GO:0072359,GO:0080090,GO:0080134,GO:0090033,GO:0090304,GO:0097159,GO:0097367,GO:0097437,GO:0097458,GO:0097485,GO:0097659,GO:0098727,GO:0098760,GO:0098761,GO:0099402,GO:0120036,GO:0120039,GO:0140030,GO:0140033,GO:0140097,GO:0140110,GO:1900187,GO:1900189,GO:1900190,GO:1900192,GO:1900390,GO:1900393,GO:1900400,GO:1900428,GO:1900430,GO:1901184,GO:1901186,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901700,GO:1901836,GO:1901838,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902659,GO:1902661,GO:1902679,GO:1902680,GO:1902692,GO:1902806,GO:1902807,GO:1902893,GO:1902895,GO:1903047,GO:1903506,GO:1903507,GO:1903508,GO:1904837,GO:1904949,GO:1905392,GO:1990837,GO:1990928,GO:2000026,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2000145,GO:2000177,GO:2000178,GO:2000217,GO:2000219,GO:2000241,GO:2000243,GO:2000647,GO:2000648,GO:2001141
KEGG Pathwayko04714,ko05225,map04714,map05225
KEGG koko:K11647,ko:K11786
Preferred nameSMARCA4
Seed eggNOG ortholog65071.PYU1_T003701
Seed ortholog evalue2.2e-56
Seed ortholog score224.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12458.1531.1prot_E-siliculosus-1a_F_contig12458.1531.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12458 323..1425 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927767.8915908-UTR-E-siliculosus-1a_F_contig12458:316..3221622927767.8915908-UTR-E-siliculosus-1a_F_contig12458:316..322Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12458 317..322 +
1696318671.6916823-UTR-E-siliculosus-1a_F_contig12458:316..3221696318671.6916823-UTR-E-siliculosus-1a_F_contig12458:316..322Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12458 317..322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927767.9054198-CDS-E-siliculosus-1a_F_contig12458:322..5591622927767.9054198-CDS-E-siliculosus-1a_F_contig12458:322..559Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12458 323..559 +
1696318671.7040563-CDS-E-siliculosus-1a_F_contig12458:322..5591696318671.7040563-CDS-E-siliculosus-1a_F_contig12458:322..559Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12458 323..559 +
1622927767.9165645-CDS-E-siliculosus-1a_F_contig12458:1251..14251622927767.9165645-CDS-E-siliculosus-1a_F_contig12458:1251..1425Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12458 1252..1425 +
1696318671.7121086-CDS-E-siliculosus-1a_F_contig12458:1251..14251696318671.7121086-CDS-E-siliculosus-1a_F_contig12458:1251..1425Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12458 1252..1425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12458.1531.1

>prot_E-siliculosus-1a_F_contig12458.1531.1 ID=prot_E-siliculosus-1a_F_contig12458.1531.1|Name=mRNA_E-siliculosus-1a_F_contig12458.1531.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=137bp
MDILEDFFTFRGYSYLRLDGATSSEEREKRMARFNAPDSPYFVFVLSTRA
GGLGLNLATADTVILFDSDWNPMMDMQAQDRAHRIGQKHEVRVFRLVTDS
PVEERIISRATDKLNMTGLVVEAGKFNRDSKAAERK*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig12458:317..1425+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12458.1531.1 ID=mRNA_E-siliculosus-1a_F_contig12458.1531.1|Name=mRNA_E-siliculosus-1a_F_contig12458.1531.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1109bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12458:317..1425+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAGGCGATGGACATCTTGGAAGACTTTTTCACGTTCCGCGGGTACTCGTA
CCTCCGTCTCGACGGAGCCACGTCCTCCGAGGAGCGAGAGAAACGGATGG
CTCGATTCAACGCCCCGGACTCGCCCTACTTTGTGTTCGTGCTGAGCACC
CGGGCGGGCGGCCTGGGTCTCAACCTGGCGACGGCGGACACGGTGATCCT
GTTCGACTCAGACTGGAACCCAATGATGGACATGCAGGCGCAGGTGTGTG
TGTGTGTGTGCGGTCGTTGTCGGTGGTGTGGTGCCGTTGTCGTTGTGCAC
ATCCGTTGTTTTTTTGTGGTGATTGTGGGTGTCGTTTGTTGTTGCTGTTG
GTGTTGGTGGTTGTTGTTGTTGTTGTCGTTGCTGCTGCTGCTGTGGTCGG
TGGTGTCGTTGTCGTCGTGCCTATTTGTTGTTTTTCGTTCTACTTGTCCA
TGTCGTTGTTGCTGTTGGTGTTGCTGTCGTTGCTGTTGGTGGTGGTGGTG
GTTGTTATCGTCATCGTTGTTGTCGTTGCTGCTGCTGCTGTGGTCGGTGG
TGTCGTTGTCGTCGTGCCTATTTGTTGTTTTTCGTTCTACTTGTCCATGT
CGTTGTTGCTGTTGGTGTTGCTGTCGTTGCTGTTGGTGGTAGTGGTGGTT
GTTATCGTCATCGTTGTTGTCGTTGCTGCTGCTGTCGTCGGTGGTGTCGT
TGTCGTCGTACCTATTCGTTGTTTCGTCGTAGTCATCGACGTCGTTGCTG
CTGTTACTCTTGCTGTCGCTGTCGCTGTCGCTGTCGCTGTCGCTGTCCTC
ATGGTCGATTTCAGGTGTACTCGTTACATATTATGTATCATGAAATCCCT
GACTGATCTTTTCTTTCTTCAAACCCTCTTTTGGCCTCCCGTCCCTGACC
CCTTCCCCGCCGCAACCACGAATGGAAATCTGCAGGACCGAGCCCACCGC
ATCGGGCAGAAGCACGAGGTACGGGTATTCCGCCTGGTGACTGACAGTCC
CGTCGAAGAGCGGATCATCTCCAGGGCCACGGACAAGCTCAACATGACCG
GGCTTGTCGTTGAAGCGGGCAAGTTTAACCGTGACTCCAAGGCGGCCGAG
CGAAAGTGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12458:317..1425+

>mRNA_E-siliculosus-1a_F_contig12458.1531.1 ID=mRNA_E-siliculosus-1a_F_contig12458.1531.1|Name=mRNA_E-siliculosus-1a_F_contig12458.1531.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=822bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12458:317..1425+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACATCTTGGAAGACTTTTTCACGTTCCGCGGGTACTCGTACCTCCG
TCTCGACGGAGCCACGTCCTCCGAGGAGCGAGAGAAACGGATGGCTCGAT
TCAACGCCCCGGACTCGCCCTACTTTGTGTTCGTGCTGAGCACCCGGGCG
GGCGGCCTGGGTCTCAACCTGGCGACGGCGGACACGGTGATCCTGTTCGA
CTCAGACTGGAACCCAATGATGGACATGCAGGCGCAGATGGACATCTTGG
AAGACTTTTTCACGTTCCGCGGGTACTCGTACCTCCGTCTCGACGGAGCC
ACGTCCTCCGAGGAGCGAGAGAAACGGATGGCTCGATTCAACGCCCCGGA
CTCGCCCTACTTTGTGTTCGTGCTGAGCACCCGGGCGGGCGGCCTGGGTC
TCAACCTGGCGACGGCGGACACGGTGATCCTGTTCGACTCAGACTGGAAC
CCAATGATGGACATGCAGGCGCAGGACCGAGCCCACCGCATCGGGCAGAA
GCACGAGGTACGGGTATTCCGCCTGGTGACTGACAGTCCCGTCGAAGAGC
GGATCATCTCCAGGGCCACGGACAAGCTCAACATGACCGGGCTTGTCGTT
GAAGCGGGCAAGTTTAACCGTGACTCCAAGGCGGCCGAGCGAAAGTGAGA
CCGAGCCCACCGCATCGGGCAGAAGCACGAGGTACGGGTATTCCGCCTGG
TGACTGACAGTCCCGTCGAAGAGCGGATCATCTCCAGGGCCACGGACAAG
CTCAACATGACCGGGCTTGTCGTTGAAGCGGGCAAGTTTAACCGTGACTC
CAAGGCGGCCGAGCGAAAGTGA
back to top