mRNA_E-siliculosus-1a_F_contig1245.1529.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1245.1529.1
Unique NamemRNA_E-siliculosus-1a_F_contig1245.1529.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1245.1529.1 vs. uniprot
Match: A0A6H5JG25_9PHAE (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG25_9PHAE)

HSP 1 Score: 365 bits (938), Expect = 3.260e-126
Identity = 203/211 (96.21%), Postives = 205/211 (97.16%), Query Frame = 2 
Query:   17 REAIMPTDTLSNDDLTRLYTWVDEIKLSRPKRNITRDFSDGVLVAEVVAFYFPKLVDLHNYAAANAVGQKTYNWNTLNEKVLKKMQYQIPKADVDAVVQCKPGAIEKVLYTLQLKMAQYRERCKAGWGASSSSRAEQDAKTSSGSGGVGGEVAMSLEDKQALADREEETQELRETNELLRLKITKLEQXXXXXXXXXQRLTEAAEVGGMLP 649
            REAIMPTDTLSNDDLTRLYTWVDEIKLSRPKRNITRDFSDGVLVAEVVAFYFPKLVDLHNYAAANAVGQKTYNWNTLN+KVLKKMQYQIPKADVDAVVQCKPGAIEKVLYTLQLKMAQYRER KAGWGASSSSRAEQ AKTS GSGGVG EVAMS EDKQALADREEETQELRETNELLRLKITKLEQXXXXXXXXX RLTEA+EVGGMLP
Sbjct:   17 REAIMPTDTLSNDDLTRLYTWVDEIKLSRPKRNITRDFSDGVLVAEVVAFYFPKLVDLHNYAAANAVGQKTYNWNTLNDKVLKKMQYQIPKADVDAVVQCKPGAIEKVLYTLQLKMAQYRERSKAGWGASSSSRAEQGAKTSGGSGGVGVEVAMSPEDKQALADREEETQELRETNELLRLKITKLEQXXXXXXXXXXRLTEASEVGGMLP 227
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BLAST of mRNA_E-siliculosus-1a_F_contig1245.1529.1 vs. uniprot
Match: D7FHM0_ECTSI (CH_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM0_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 7.120e-93
Identity = 159/173 (91.91%), Postives = 162/173 (93.64%), Query Frame = 2 
Query:  131 SDGVLVAEVVAFYFPKLVDLHNYAAANAVGQKTYNWNTLNEKVLKKMQYQIPKADVDAVVQCKPGAIEKVLYTLQLKMAQYRERCKAGWGASSSSRAEQDAKTSSGSGGVGGEVAMSLEDKQALADREEETQELRETNELLRLKITKLEQXXXXXXXXXQRLTEAAEVGGMLP 649
            S   ++ EVVAFYFPKLVDLHNYAAANAVGQKTYNWNTLNEKVLKKMQYQIPKADVDAVVQCKPGAIEKVLYTLQLKMAQYRERCKAGWGASSSSR+EQDAKTS GSGGVG EVAMS EDKQALADREEETQELRETNELLRLKITKLE XXXXXXXXX  LTEAAE GGMLP
Sbjct:    5 SQRCMLPEVVAFYFPKLVDLHNYAAANAVGQKTYNWNTLNEKVLKKMQYQIPKADVDAVVQCKPGAIEKVLYTLQLKMAQYRERCKAGWGASSSSRSEQDAKTSGGSGGVGMEVAMSPEDKQALADREEETQELRETNELLRLKITKLEXXXXXXXXXXXXLTEAAEAGGMLP 177
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BLAST of mRNA_E-siliculosus-1a_F_contig1245.1529.1 vs. uniprot
Match: A0A8J2WVQ1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WVQ1_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.720e-52
Identity = 101/201 (50.25%), Postives = 133/201 (66.17%), Query Frame = 2 
Query:   44 LSNDDLTRLYTWVDEIKLSRPKRNITRDFSDGVLVAEVVAFYFPKLVDLHNYAAANAVGQKTYNWNTLNEKVLKKMQYQIPKADVDAVVQCKPGAIEKVLYTLQLKMAQYRERCKAGWGASSSSRAEQDAKTSSGSGGVG---GEVAMSLE---DKQALADREEETQELRETNELLRLKITKLEQXXXXXXXXXQRLTEAA 628
            + +D+L RLY WVDEI LSRPKRNI RDF+DGVL AEV   YFP+LVDLHNY  AN++ QK YNW+TLN +VL+K+   +P+ADV+AV QC PGA+E+VL TLQLKMA+YR        A+   R E  A T + +  V     +   SL+   D++ L ++E+E  +LRET ++L  KI KLEQ         Q+L +AA
Sbjct:    5 MDDDELQRLYAWVDEIPLSRPKRNIARDFADGVLAAEVCHHYFPRLVDLHNYPPANSMRQKLYNWDTLNARVLRKLDAALPRADVEAVCQCAPGAVERVLNTLQLKMARYR--------ANQQRRKEAKATTQANNEAVAPPPAKAKASLQADVDQELLVEKEQEIHDLRETVDILEQKIAKLEQLVRLKDAKIQKLKDAA 197
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BLAST of mRNA_E-siliculosus-1a_F_contig1245.1529.1 vs. uniprot
Match: A0A7S1CID1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CID1_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.020e-47
Identity = 76/113 (67.26%), Postives = 92/113 (81.42%), Query Frame = 2 
Query:   44 LSNDDLTRLYTWVDEIKLSRPKRNITRDFSDGVLVAEVVAFYFPKLVDLHNYAAANAVGQKTYNWNTLNEKVLKKMQYQIPKADVDAVVQCKPGAIEKVLYTLQLKMAQYRER 382
            L +D L ++Y+WVDEI LSRPKRNITRDFSDGV++AEVVA YFP+LV++HNY+ AN+V QK YNW TLN+KV KK+ + + K DVDAVV CKPG +E VLY LQ KMA YR R
Sbjct:   50 LDDDQLQKIYSWVDEIPLSRPKRNITRDFSDGVMMAEVVAHYFPRLVEMHNYSPANSVRQKLYNWATLNQKVFKKLGFAVAKPDVDAVVNCKPGVVESVLYQLQSKMAAYRAR 162
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BLAST of mRNA_E-siliculosus-1a_F_contig1245.1529.1 vs. uniprot
Match: A0A1Y1I7X9_KLENI (Calponin-homology (CH) domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I7X9_KLENI)

HSP 1 Score: 165 bits (418), Expect = 2.360e-47
Identity = 96/218 (44.04%), Postives = 127/218 (58.26%), Query Frame = 2 
Query:   44 LSNDDLTRLYTWVDEIKLSRPKRNITRDFSDGVLVAEVVAFYFPKLVDLHNYAAANAVGQKTYNWNTLNEKVLKKMQYQIPKADVDAVVQCKPGAIEKVLYTLQLKMAQY----RERCKAGWGASSSSRAEQD--------------AKTSSGSGGVGGEVAMSLEDKQALADREEETQELRETNELLRLKITKLEQXXXXXXXXXQRLTEAAEVGGM 643
            LS  +L  LYTWVDEI LSRPKRNI RDFSDGVL AE+VA YFPK V+ HNY+ AN   QK YNWNTLN KV KK+Q+ + + +++A+  C PGAIEK+L  L++K+A+Y    R     G    +   A Q               A +  G+ G   +     +D +A+A+++ +  ELRETNELL  K+ KLEQ         Q LT   +  G+
Sbjct:    7 LSEAELQNLYTWVDEIPLSRPKRNIARDFSDGVLAAEIVAHYFPKTVETHNYSQANGFAQKMYNWNTLNLKVFKKLQFSVTREEIEAISNCVPGAIEKLLKQLKVKIAKYKPGRRPSSSEGPAPGTEGMASQSGHQRRGDSLSPNSKALSYGGANGTATDPTRRFQDLEAVAEKDAKILELRETNELLDSKVKKLEQLVRLKESKIQALTAKLQQAGL 224
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BLAST of mRNA_E-siliculosus-1a_F_contig1245.1529.1 vs. uniprot
Match: A0A383W7R9_TETOB (Calponin-homology (CH) domain-containing protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383W7R9_TETOB)

HSP 1 Score: 164 bits (416), Expect = 2.600e-47
Identity = 97/212 (45.75%), Postives = 128/212 (60.38%), Query Frame = 2 
Query:   29 MPTDTLSNDDLTRLYTWVDEIKLSRPKRNITRDFSDGVLVAEVVAFYFPKLVDLHNYAAANAVGQKTYNWNTLNEKVLKKMQYQIPKADVDAVVQCKPGAIEKVLYTLQLKMAQYRERCKAGWGASSSSRAEQDAKTSSGSGGVGGEVAMSLE-------DKQALADREEETQELRETNELLRLKITKLEQXXXXXXXXXQRLTEAAEVGGM 643
            M T +++ +DL  LYTWVDEI LSRPKRNI+RDF+DGVL+AEVVA YFPKLV+LHNY++AN + QK YNWNTLN KVLK++  Q+ K  +  +    PGAIE+ L  ++LK+A Y+E         SS R     + SS +  +G    +S           + LA++E    ELRETNE+L  K+ KLEQ         Q L    +  GM
Sbjct:    1 MDTSSMNEEDLQGLYTWVDEIPLSRPKRNISRDFADGVLLAEVVANYFPKLVELHNYSSANGMQQKLYNWNTLNSKVLKRLGLQLSKQHMTEIANGTPGAIEQALQVVKLKIAAYQEP--------SSGRTTPRGEPSSNNMCMGSSSKVSAARLQQAAISSEVLAEKERTIVELRETNEILETKVRKLEQLVKLKDAKIQTLVAKLQAAGM 204
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BLAST of mRNA_E-siliculosus-1a_F_contig1245.1529.1 vs. uniprot
Match: A0A7S0JIM5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JIM5_9EUKA)

HSP 1 Score: 163 bits (413), Expect = 1.780e-46
Identity = 100/211 (47.39%), Postives = 132/211 (62.56%), Query Frame = 2 
Query:   44 LSNDDLTRLYTWVDEIKLSRPKRNITRDFSDGVLVAEVVAFYFPKLVDLHNYAAANAVGQKTYNWNTLNEKVLKKMQYQIPKADVDAVVQCKPGAIEKVLYTLQLKMAQYR------ERCKAGWGASSSSRAEQDAKTS-----------SGSG--------GVGGEVA----MSLED---KQALADREEETQELRETNELLRLKITKLEQ 580
            L +DDL R+YTWVDEI LSRPKRNI RDFSDGVL+AE+VA YFPKLV++HNY AAN+  QK YNWNTLN KV KKM + + + ++DA+  C+P A+EK L  LQ +MA+Y        R   G G+S S+   Q++  +           S +G        GVGG  A    + L D   ++ LA+++    ELRET ++L +KI KLEQ
Sbjct:    6 LDDDDLQRIYTWVDEIPLSRPKRNIARDFSDGVLMAEIVAHYFPKLVEMHNYPAANSYAQKIYNWNTLNAKVFKKMGFALRQEEMDALCNCQPQAVEKTLKNLQQRMAKYGARQAEISRVAGGNGSSPSTDVAQESGVAAPQSVRSTAPHSAAGVQAAREARGVGGAQAKLGQLGLHDSALQELLAEKDHNIHELRETVDILEMKIQKLEQ 216
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BLAST of mRNA_E-siliculosus-1a_F_contig1245.1529.1 vs. uniprot
Match: R1C9R5_EMIHU (Calponin-homology (CH) domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C9R5_EMIHU)

HSP 1 Score: 162 bits (410), Expect = 2.210e-46
Identity = 83/186 (44.62%), Postives = 127/186 (68.28%), Query Frame = 2 
Query:   44 LSNDDLTRLYTWVDEIKLSRPKRNITRDFSDGVLVAEVVAFYFPKLVDLHNYAAANAVGQKTYNWNTLNEKVLKKMQYQIPKADVDAVVQCKPGAIEKVLYTLQLKMAQYRERCKAGWGASSSSRAEQDAKTSSGS----GGVGGEVAMSLED---KQALADREEETQELRETNELLRLKITKLEQ 580
            + +D+L R+YTWVDE+ LSRPKRNI RDF+DGVL AE+V  YFP++V++HNY +AN+  QK YNW TLN +V KKM +Q+ + ++DA+  C+P A+E++L  LQ+++++Y  R K    A     A+   ++++      GG+ G   + L D   ++ LA++++   ELRET E+L +KI KLEQ
Sbjct:    1 MDDDELQRIYTWVDEVPLSRPKRNIARDFADGVLTAEIVHHYFPRIVEVHNYPSANSYAQKMYNWQTLNARVFKKMGWQLRQEELDAICSCQPQAVERMLKQLQVRLSKYGSRSKEEEAAPQRPHAQATPRSAAAPPRRVGGLAGGAQVGLRDGAVQELLAEKDQNISELRETVEILEIKIQKLEQ 186
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BLAST of mRNA_E-siliculosus-1a_F_contig1245.1529.1 vs. uniprot
Match: A0A485LGH4_9STRA (Aste57867_20986 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGH4_9STRA)

HSP 1 Score: 160 bits (406), Expect = 3.250e-45
Identity = 84/169 (49.70%), Postives = 115/169 (68.05%), Query Frame = 2 
Query:   29 MPTDTLSNDDLTRLYTWVDEIKLSRPKRNITRDFSDGVLVAEVVAFYFPKLVDLHNYAAANAVGQKTYNWNTLNEKVLKKMQYQIPKADVDAVVQCKPGAIEKVLYTLQLKMAQYRERCKAGWGASSSSRAEQDAKTSSGSGG--VGGEVAMSLEDKQALADREEETQE 529
            M +  L ++ L ++Y W+DEI LSRPK+N+ RDFSDG+L AEV+AFYFPKLV +HNY++AN+V QK YNW TLN KVLK++ +Q+ K D+D +VQCKPGA+E+ L  LQ+K+A +R R  +            DA +SS SGG   GG    SL+  +    RE E++E
Sbjct:    1 MDSVVLDDEILQKIYAWIDEIPLSRPKKNMGRDFSDGILAAEVIAFYFPKLVQMHNYSSANSVTQKQYNWGTLNGKVLKRLGFQLTKRDIDDIVQCKPGAVEEFLSKLQVKIANHRLRRNSAQEGHGGGDLPNDAASSSSSGGDLYGGSGGPSLDKHKRSEVREAESKE 169
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BLAST of mRNA_E-siliculosus-1a_F_contig1245.1529.1 vs. uniprot
Match: A0A813AWI9_9DINO (SPEF1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AWI9_9DINO)

HSP 1 Score: 158 bits (400), Expect = 1.890e-44
Identity = 89/209 (42.58%), Postives = 130/209 (62.20%), Query Frame = 2 
Query:   44 LSNDDLTRLYTWVDEIKLSRPKRNITRDFSDGVLVAEVVAFYFPKLVDLHNYAAANAVGQKTYNWNTLNEKVLKKMQYQIPKADVDAVVQCKPGAIEKVLYTLQLKMAQYRERCKAGWGASSSSRAEQDAKTSSGSG------------------------GVGGEVAMSLEDKQ------ALADREEETQELRETNELLRLKITKLEQ 580
            L ++ L ++YTWVD+I LSRPKRNITRDFSDGVL AEV+  YFP++V+LHNY++A++V QK YNW+TLN KVLK++++ I K +++  V C PG +E +L  LQ KMAQYR+R      ++++  ++   ++++GS                         G  G+ + +L   Q      A+AD++   QEL ET E L LK+ KLEQ
Sbjct:    7 LDDESLQKIYTWVDQIPLSRPKRNITRDFSDGVLFAEVINHYFPRMVELHNYSSASSVRQKLYNWSTLNAKVLKRLKFSISKEEMEDTVNCVPGVVEMLLMRLQSKMAQYRQRKAKKSLSAAAGESDMGGRSTAGSSTGGSIAPYSAGSQGALHIDGAAGFGASGQASAALAASQQANLASAVADKDASIQELSETIEFLELKVAKLEQ 215
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1245.1529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JG25_9PHAE3.260e-12696.21Calponin-homology (CH) domain-containing protein n... [more]
D7FHM0_ECTSI7.120e-9391.91CH_2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A8J2WVQ1_9STRA1.720e-5250.25Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1CID1_9STRA1.020e-4767.26Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A1Y1I7X9_KLENI2.360e-4744.04Calponin-homology (CH) domain-containing protein n... [more]
A0A383W7R9_TETOB2.600e-4745.75Calponin-homology (CH) domain-containing protein n... [more]
A0A7S0JIM5_9EUKA1.780e-4647.39Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
R1C9R5_EMIHU2.210e-4644.62Calponin-homology (CH) domain-containing protein n... [more]
A0A485LGH4_9STRA3.250e-4549.70Aste57867_20986 protein n=1 Tax=Aphanomyces stella... [more]
A0A813AWI9_9DINO1.890e-4442.58SPEF1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1245contigE-siliculosus-1a_F_contig1245:18096..23239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size624
Model size731
Exons5
Ec32 orthologEc-24_004040.1
Ec32 ortholog descriptionProtein of unknown function DUF1042
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2CSC3@1,2S497@2759
EggNOG free text desc.CH-like domain in sperm protein
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0007026,GO:0007498,GO:0008017,GO:0008092,GO:0008150,GO:0009888,GO:0009987,GO:0010639,GO:0015631,GO:0016477,GO:0031110,GO:0031111,GO:0031114,GO:0031514,GO:0032502,GO:0032838,GO:0032886,GO:0033043,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043242,GO:0043244,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051179,GO:0051493,GO:0051494,GO:0051674,GO:0065007,GO:0070507,GO:0097014,GO:0099568,GO:0120025,GO:0120038,GO:1901879,GO:1901880,GO:1902903,GO:1902904
Preferred nameSPEF1
Seed eggNOG ortholog2903.EOD15384
Seed ortholog evalue8.4e-39
Seed ortholog score167.2
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927767.400287-UTR-E-siliculosus-1a_F_contig1245:18095..181741622927767.400287-UTR-E-siliculosus-1a_F_contig1245:18095..18174Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1245 18096..18174 -
1696318671.533278-UTR-E-siliculosus-1a_F_contig1245:18095..181741696318671.533278-UTR-E-siliculosus-1a_F_contig1245:18095..18174Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1245 18096..18174 -
1622927767.5965421-UTR-E-siliculosus-1a_F_contig1245:23211..232391622927767.5965421-UTR-E-siliculosus-1a_F_contig1245:23211..23239Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1245 23212..23239 -
1696318671.5901697-UTR-E-siliculosus-1a_F_contig1245:23211..232391696318671.5901697-UTR-E-siliculosus-1a_F_contig1245:23211..23239Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1245 23212..23239 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927767.4186573-CDS-E-siliculosus-1a_F_contig1245:18174..183001622927767.4186573-CDS-E-siliculosus-1a_F_contig1245:18174..18300Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1245 18175..18300 -
1696318671.545112-CDS-E-siliculosus-1a_F_contig1245:18174..183001696318671.545112-CDS-E-siliculosus-1a_F_contig1245:18174..18300Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1245 18175..18300 -
1622927767.4334328-CDS-E-siliculosus-1a_F_contig1245:18937..191261622927767.4334328-CDS-E-siliculosus-1a_F_contig1245:18937..19126Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1245 18938..19126 -
1696318671.55399-CDS-E-siliculosus-1a_F_contig1245:18937..191261696318671.55399-CDS-E-siliculosus-1a_F_contig1245:18937..19126Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1245 18938..19126 -
1622927767.5503964-CDS-E-siliculosus-1a_F_contig1245:19538..196191622927767.5503964-CDS-E-siliculosus-1a_F_contig1245:19538..19619Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1245 19539..19619 -
1696318671.5626338-CDS-E-siliculosus-1a_F_contig1245:19538..196191696318671.5626338-CDS-E-siliculosus-1a_F_contig1245:19538..19619Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1245 19539..19619 -
1622927767.568919-CDS-E-siliculosus-1a_F_contig1245:21983..220851622927767.568919-CDS-E-siliculosus-1a_F_contig1245:21983..22085Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1245 21984..22085 -
1696318671.5718215-CDS-E-siliculosus-1a_F_contig1245:21983..220851696318671.5718215-CDS-E-siliculosus-1a_F_contig1245:21983..22085Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1245 21984..22085 -
1622927767.5844996-CDS-E-siliculosus-1a_F_contig1245:23085..232111622927767.5844996-CDS-E-siliculosus-1a_F_contig1245:23085..23211Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1245 23086..23211 -
1696318671.5809278-CDS-E-siliculosus-1a_F_contig1245:23085..232111696318671.5809278-CDS-E-siliculosus-1a_F_contig1245:23085..23211Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1245 23086..23211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1245.1529.1prot_E-siliculosus-1a_F_contig1245.1529.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1245 18175..23211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1245.1529.1

>prot_E-siliculosus-1a_F_contig1245.1529.1 ID=prot_E-siliculosus-1a_F_contig1245.1529.1|Name=mRNA_E-siliculosus-1a_F_contig1245.1529.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=208bp
MPTDTLSNDDLTRLYTWVDEIKLSRPKRNITRDFSDGVLVAEVVAFYFPK
LVDLHNYAAANAVGQKTYNWNTLNEKVLKKMQYQIPKADVDAVVQCKPGA
IEKVLYTLQLKMAQYRERCKAGWGASSSSRAEQDAKTSSGSGGVGGEVAM
SLEDKQALADREEETQELRETNELLRLKITKLEQLLRLKDAKIQRLTEAA
EVGGMLP*
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mRNA from alignment at E-siliculosus-1a_F_contig1245:18096..23239-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1245.1529.1 ID=mRNA_E-siliculosus-1a_F_contig1245.1529.1|Name=mRNA_E-siliculosus-1a_F_contig1245.1529.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5144bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1245:18096..23239- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGAACGGCTGCGTGCAGAGAAGCTATCATGCCCACCGACACGCTGAGTA
ACGATGATCTGACGCGGTTATATACGTGGGTGGACGAAATCAAGCTGTCC
AGGCCGAAGCGCAACATCACGAGAGACTTCAGCGATGGCGTCCTCGTCGC
TGAGGTGAGAGCTAAACACAGCAGACACGGCGGATACCGCCCGCGTAACG
GTTGAAGTTTGACATGATGATGACCCCCGAGGCCGACCCCGTCTGCATTT
CAGCAGGTACGTGCTGCCTGAGGTGAGTTACGGGAAATGTGTGTCATGGT
GGCAAATGTACTGTTGAAGACATGCCTCGATCGTTGTTACAGTACACAAG
TGGACGTCTAACGCACTTCCCCACAATGTCGGATGCCCTCGTCCCCTTGT
GGAGGCCTTGACAAGGTCGAACACCTTGGAGAAGACAACTAAGGCCTCGA
AAGGGGAGAATCGAGGTAATTTTGAGGCCTTGCCTTGGTTGTCTTCTCCA
AGGCGTTCGACCTTGTCAAGGTCTCCACAAGGGGGCGAGGGCATCCGACA
CTTTGACGAAGGGGGTCGACCTCCACCTGTGGCAAGTACTGCTTTAGATC
CTTTGGGGTGTACAGCAGTAGACGATCTTTTGCCCCCCCTGCTGGCAACA
CGCAGCAGAGACATCGTAGCCCCGGTCGTTGGGATTGATTTGCACGTAAT
AAGATGTTGGAAATAATATGGCGCATCTGTGCCACTTGTTGTTCGTTTTT
GGGTGGTGGCGCTGTGATACATCAGAGCTACAGCAGTGATTCACGTCCCG
CCGGCTGTGAACTATACATCTCTAGTCTACAGCTTGTAGCGGGCAGAGTA
CGAATATTTTTTCATTGGTCTATCCTTGCCACCTCACACGGAACTGTGGC
ACATCAGTACCCAGTCTATTTTTTTCTCTCCAGTGTACTGCATGATTAGA
GCATGCCGCTCAGTAGGTTCTTGCAATGTATGTAGCGTCTGATGATCAAT
TTTCCCAAAAGCATATATTTTCCCAAAGGCTTGCCCTCGTCCTCCTGATA
ACACAAGTCGGACTGCGAATCCGCTGCACAATCCACTGCCGCCCACGGCA
GCCTTTCAATCCACCACTGTTGCCGTCTTCGGTCAACTCGCGCGACCATC
GCAGGTTGTGGCGTTTTACTTCCCGAAGCTGGTAGACCTCCACAACTACG
CTGCTGCTAATGCGGTGGGCCAGAAAACCTACAACTGGAACACATTAAAT
GAAAAGGTAAGACGCAAAGCCACAACAAACTACCAGTAGGCGTAGCTGCG
GAAATGCGTCGAATAAGAGCCACCCGGATCCCTATCCCTATGAACGACCC
CCTAACCCCATGTACCTCCCAGTGAATGTATCATTGTCATGGGGGGTGCA
TGAGGGATTTGCACTGCCCCTTGTCCCTGGGTCAACCATTGTTGTTGTTG
TTGTTGTTGTCTTCACATTAAACTCGTGTCAGTTGCTAATCCCAAAATCT
AGCAAAGACGCGGTCCGTGGTCACAAAAATGCTAGAGCCATCAGAAGATC
TAAAGAACACGCAAACTAGCAAGAAAAGGGTACACAATCCCGAAGAGGTA
CACCTACATCCCTGCAGCACGTTTGCGTGCCCAAAACTGAACTACACGCC
CACACACTGCATTCGACTACAGCAGCATCATCCCCCCTGTCCCACACTTT
ACCACAATGAACGTCTTGTCGACTACAGCGTATACAGCTGTCTGGAGTGC
TGCCTGTACCATAACACTATGCATGGTAAGCATGGCTCAAGTTCGGGGCG
CGCAACTGCTGTCTGAAGTGCTGTCAGAATGCGTCCGTGGACATATAGTG
AAAAAGAACACCCAACCAAAGCCATCATTGCAATTGACAATCACCGAATC
TACCCCCGATCATCTATGTTGGACACAGCGGTGATAATAATCGACACTGA
CTAGGAATCGTTCCACATTGAAGGGGTCTTACACGATGCAGGTACACAAT
AAAGGCACCCGGGGTATCCGCGCCATCTCTGCCGCGTCTCTCTACAAAAC
CAGTGACGTCATTACACACACCCAACACCGATGTTCAGGAAAAAAAAACG
GAAAATATTTGACAACACAAAATGTTCGTCCGTGCGTCACGGTTCGATGT
CGTCTGTGTGCTCCGGTGCCGCTGCTCCGATGCCGCTGCTGCGATGCCGC
TGCTCCGGTGCCGCTGCTCCAGCGTCGCTGCGGCCAGTCCTAGCACGACC
AACCTTGACCCGCTCCGTCCGTACACGCTCTCGTTGCTATCCTTCCCAGT
CGGTTCCTCGCTTTCTCCCTCGCTGCACTTAGGGTTCTTGGTCTGAAAAT
TCCCGCGTCGAAGGGTCAACAAGCCCACTCAGCTCGTCACCACCTGCTCC
CTCCTTCCCTTTGATGGTGGAGCCTGAGACAGTACAGCTCCCTCTAGCAA
ACGTAGGGCCGTGTACATTGTGTCCATCCACGTTTCTGATGACGTCTGCC
TCCGCGCACAAAACTGAGATGGACATTGCTGTCTACACCGACGGCCATGA
GGCCCGCGCATCTGCATTTTTGTACCTGACGCACCAGTGCCGACCCAACT
CTACCACTACGCACGCCTCGCGGCGGGTGCGCCACAGCAAGAAGGTATCG
GTCCCTTGAGGGTGAGTCTAGCCATGCTCGCTAGATTGACCCCCCCCTCG
CTATGGGCCATGCCTAAGCAAAAGCCTTGCCGAGGCTGCGAGGGGAAGAA
GGAAGGGCTTGCCCGGATGGGTTCGCGCACACCACGTACGCGCGATATAC
GTCATGATGTTTCGTCTTCTGCGATAGCGTGTACGTTGAACCCGCATACT
GGGCCCTGTCTCCCAACCTCCTCCGAACCCCCCCCCGTTTAGGGGGGGGC
AGATGACTTGAAATAGTGCTCTCGTTCTTTGTCTCGTTATTGTGTAGACT
GATGCGTTTTCATTAGGCACCCGGTTAGCGTGGTCGATGCCACGGAAACA
AACACGCGTGCGCCCAAACGTCGCAAACCACCCGATGTGGTGCCAACACT
GGTGAGTCCTACACGTTACAACGACAACGATACCGGTACCGCTGCTTGCT
GTCGCCCTTTTGTAGGCGAAGGTTTCTTACAGTCTATGGTGGTGAAAATT
GGGTGCGAGAAACGGTCGTGAGAACGTGAGGAAACAAGTGACAAACTACA
GACAAGGAGCACGTGACAGCAACAACAGAGGAAATCAGGAGAATGGCTTC
AAAGAAAAAACGAAGCTCCGTTCCAAATATCTCAACGGCTTGAGCTGGTT
TTTCGGCCCAATGATGACGTTGCTTGTCATCTCCAGGCCCCCAACTGTAG
CGGTGCTGATACTTGCGAGAGTGTAGCCGTACTGTACTGCTGTAGTATCG
TTGCTGGGGGACGACAAAGACCGCGGAATACAAAACTACTTTCAATAGAC
TGCTGTCGTGATGCTCTGGTATACTGTGGTCAACCCTCCTTCCGATAGGT
CTGTCCGCAGCATTCTATCGAGTTCTTGCTCCCCTTCAAGCCTGACTTCT
GGGTCACTTGTGGCCTTCCAAACACAAGAATGACGGCTCTGTACTCATAC
CCTACCCTATGCCCGGACAGGTTCTGAAAAAGATGCAGTACCAGATTCCA
AAGGCAGACGTGGACGCGGTGGTGCAATGCAAGCCGGGAGCGATCGAGAA
GGTGCCTCAGTCTGAGGTCCCAGGTTTTGGTATTGCGTAGACACTGCGTA
TGTATGTACTTATCAACCAGTTGTGTGCGAGATATATTCATCTCGTCTAT
CTTCTTTCTCTGCATCAAAGTGGTTATCTTTCTTGGCTTCCTTCATGACA
CAATAAATGGCACCGATAATATCTCAGAGGACTAGCACGGTTGTCCGAGG
CAAGCTTCGTTGAAAAACAGTCCACACAATCGTGATCTCTTACACCGAGG
CTATCACAGCCTCCCTTGGTACCCTATTGGTCCATCCATCATAGCTACAG
TACCAGCTCGATGACACCCCCCCCTGCCCTCCGCCCCATCCCTTTCCAAC
TGTGCTACGCACGCACGCCCACCCACCCCCTGATACACCGCACGCTAAAC
TCCCTCCATACAGGTTTTGTACACGCTGCAGCTGAAAATGGCTCAGTATC
GAGAGCGATGTAAAGCTGGCTGGGGAGCTTCCTCTTCTTCCCGAGCAGAG
CAGGATGCGAAAACCTCCAGCGGAAGCGGCGGGGTGGGGGGCGAAGTCGC
CATGTCCCTCGAGGACAAGCAGGCGCTGGCGGACAGAGAGGAGGAGACTC
AGGTGCGGGACGGTTTTAAGAACGGATCGGACAAGTTGGTGAAGTAGGTC
CGAATCTTGCACGATAGACGTGCTCTTGAAATGACGTCCACAACGTGAGC
AAATAAAGGTAGACTAGAGCAATAGCTCGAGAGGCTTAGAGCTTGCCACA
TTGATCGATGAACGTGTGCATACGTGTTTTTCTGGTGGGCTTCGATTGGC
TGTTTTGATTCGCCATGAATCCGGTGTGTGTTGTAGGACCCGAACAAGTT
CGTGGGGCAGACTCTCGTATCGCCGTGGTTGCATGCAGCGCTACAAGAGC
CGGTACACCTTGGTGGCCACAATCCATGTTCCCAGCGGCCTACGACCAGC
AGGTCGACATGCGAGCAGGCCAACGCGCGTAGATTGATGTAGACTAAACT
GCAATACTTCCATGGTCTAGAGTCAACCTTCTCTTCTCTGCGCTTCTCAC
AAGAAGCTGCGGCGTCCCAACACGATCGATTTGATCCGACCTACTTGTTT
GTCATTTGCTGCGCAATGCGTGTGTCGCCGGCGTATTCCTTGTAGACCAT
ACATAACCTAGGCGGTACCAATACCGAGTCGAACGCATCTAACCGTACTT
CCGGGCCCTCGTTGACCGTGGCTCCGTGGTGGACGGCAGGAACTCCGGGA
GACGAACGAACTGCTCCGTCTCAAGATTACCAAGCTCGAGCAGCTGCTGC
GCCTCAAAGACGCAAAGATCCAGAGACTGACGGAAGCCGCGGAGGTTGGG
GGCATGCTGCCATAGCCTCGGTTGCTCTTGGCTTGCGCGTGTGTGTGCGG
CACTTGAGTACTGTAGGAGGGGGTATAGTGCACGAACGTGTTTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1245:18096..23239-

>mRNA_E-siliculosus-1a_F_contig1245.1529.1 ID=mRNA_E-siliculosus-1a_F_contig1245.1529.1|Name=mRNA_E-siliculosus-1a_F_contig1245.1529.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1248bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1245:18096..23239- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCCACCGACACGCTGAGTAACGATGATCTGACGCGGTTATATACGTG
GGTGGACGAAATCAAGCTGTCCAGGCCGAAGCGCAACATCACGAGAGACT
TCAGCGATGGCGTCCTCGTCGCTGAGATGCCCACCGACACGCTGAGTAAC
GATGATCTGACGCGGTTATATACGTGGGTGGACGAAATCAAGCTGTCCAG
GCCGAAGCGCAACATCACGAGAGACTTCAGCGATGGCGTCCTCGTCGCTG
AGGTTGTGGCGTTTTACTTCCCGAAGCTGGTAGACCTCCACAACTACGCT
GCTGCTAATGCGGTGGGCCAGAAAACCTACAACTGGAACACATTAAATGA
AAAGGTTGTGGCGTTTTACTTCCCGAAGCTGGTAGACCTCCACAACTACG
CTGCTGCTAATGCGGTGGGCCAGAAAACCTACAACTGGAACACATTAAAT
GAAAAGGTTCTGAAAAAGATGCAGTACCAGATTCCAAAGGCAGACGTGGA
CGCGGTGGTGCAATGCAAGCCGGGAGCGATCGAGAAGGTTCTGAAAAAGA
TGCAGTACCAGATTCCAAAGGCAGACGTGGACGCGGTGGTGCAATGCAAG
CCGGGAGCGATCGAGAAGGTTTTGTACACGCTGCAGCTGAAAATGGCTCA
GTATCGAGAGCGATGTAAAGCTGGCTGGGGAGCTTCCTCTTCTTCCCGAG
CAGAGCAGGATGCGAAAACCTCCAGCGGAAGCGGCGGGGTGGGGGGCGAA
GTCGCCATGTCCCTCGAGGACAAGCAGGCGCTGGCGGACAGAGAGGAGGA
GACTCAGGTTTTGTACACGCTGCAGCTGAAAATGGCTCAGTATCGAGAGC
GATGTAAAGCTGGCTGGGGAGCTTCCTCTTCTTCCCGAGCAGAGCAGGAT
GCGAAAACCTCCAGCGGAAGCGGCGGGGTGGGGGGCGAAGTCGCCATGTC
CCTCGAGGACAAGCAGGCGCTGGCGGACAGAGAGGAGGAGACTCAGGAAC
TCCGGGAGACGAACGAACTGCTCCGTCTCAAGATTACCAAGCTCGAGCAG
CTGCTGCGCCTCAAAGACGCAAAGATCCAGAGACTGACGGAAGCCGCGGA
GGTTGGGGGCATGCTGCCATAGGAACTCCGGGAGACGAACGAACTGCTCC
GTCTCAAGATTACCAAGCTCGAGCAGCTGCTGCGCCTCAAAGACGCAAAG
ATCCAGAGACTGACGGAAGCCGCGGAGGTTGGGGGCATGCTGCCATAG
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