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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1243.1520.1 vs. uniprot
Match: D8LHE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE1_ECTSI) HSP 1 Score: 328 bits (841), Expect = 1.090e-107 Identity = 187/229 (81.66%), Postives = 196/229 (85.59%), Query Frame = 1
Query: 106 GVENDEERAFREAGVNRVVDGLRAENTRLRQRLRSAERAAESGEDRANVEAERADALEAELGRVXXXXXXXXXXXXXXXXXXXXXADRAVAEKKGFMVQWEEDVDALRNQLGAERKAREDDRRDLESVIFDLEDEVDDLKERYRQRRKPVAKKKKRGEAASGDNEQRSREAGPSGTGLMGRSDAGNGSRRRRTEREXXXXXXXXSKKISDERDAAGQWRKAMTLLQYLD 792
G ENDEERAFREAGVNRVV GLRAENTRLRQRLRSAERA+ESGEDRANVEAERADALEAELGRV ADRAVAEK+GFMVQWEEDVDALRNQLGAERKARE+DRRDLESVIFDLEDEVD LKER+RQR+KPVAKKKKRGEA+SGDNEQRSREAGPSGTGLM RSDA NGSRRRR+ERE X SKK+SDE+DAAGQWRKAMTLLQYLD
Sbjct: 22 GNENDEERAFREAGVNRVVQGLRAENTRLRQRLRSAERASESGEDRANVEAERADALEAELGRVRATVKGRVRALKAALEEAEEDADRAVAEKEGFMVQWEEDVDALRNQLGAERKAREEDRRDLESVIFDLEDEVDGLKERFRQRKKPVAKKKKRGEASSGDNEQRSREAGPSGTGLMRRSDAENGSRRRRSERETEERSXERSKKMSDEKDAAGQWRKAMTLLQYLD 250
BLAST of mRNA_E-siliculosus-1a_F_contig1243.1520.1 vs. uniprot
Match: A0A6H5KCM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM1_9PHAE) HSP 1 Score: 312 bits (799), Expect = 1.730e-95 Identity = 198/230 (86.09%), Postives = 211/230 (91.74%), Query Frame = 1
Query: 109 VENDEERAFREAGVNRVVDGLRAENTRLRQRLRSAERAAESGEDRANVEAERADALEAELGRVXXXXXXXXXXXXXXXXXXXXXADRAVAEKKGFMVQWEEDVDALRNQLGAERKAREDDRRDLESVIFDLEDEVDDLKERYRQRRKPVAKKKKRGEAASGDNEQ--RSREAGPSGTGLMGRSDAGNGSRRRRTEREXXXXXXXXSKKISDERDAAGQWRKAMTLLQYLD 792
V+NDEERAFREAGV+RVV+GLRAENTR+R+RLRSAERAAESGEDRA VEAERADALE ELGR XXXXXXXXXXXXXXXXXXXXX DRAVAEK+GFM+QWE+DVDALRNQLGAERKAR++DRRDLESVIFDLEDEVDDLKERYRQR+KPVAKKKKRGE +SGDNEQ R RE GPSGTGLM RSDA NGSRRRRTERE SKKISDE+DAAGQWRKAMTLLQYLD
Sbjct: 483 VKNDEERAFREAGVHRVVEGLRAENTRVRERLRSAERAAESGEDRAKVEAERADALEEELGRXXXXXXXXXXXXXXXXXXXXXXXDRAVAEKEGFMIQWEQDVDALRNQLGAERKARQEDRRDLESVIFDLEDEVDDLKERYRQRKKPVAKKKKRGETSSGDNEQHSRGRETGPSGTGLMDRSDAENGSRRRRTERETAERSEERSKKISDEKDAAGQWRKAMTLLQYLD 712
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 402 |
| Model size | 1390 |
| Exons | 4 |
| Hectar predicted targeting category | other localisation |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927766.5841568-CDS-E-siliculosus-1a_F_contig1243:29882..30152 | 1622927766.5841568-CDS-E-siliculosus-1a_F_contig1243:29882..30152 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1243 29883..30152 - |
| 1696318671.1827989-CDS-E-siliculosus-1a_F_contig1243:29882..30152 | 1696318671.1827989-CDS-E-siliculosus-1a_F_contig1243:29882..30152 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1243 29883..30152 - |
| 1622927766.5945418-CDS-E-siliculosus-1a_F_contig1243:31927..32059 | 1622927766.5945418-CDS-E-siliculosus-1a_F_contig1243:31927..32059 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1243 31928..32059 - |
| 1696318671.1977308-CDS-E-siliculosus-1a_F_contig1243:31927..32059 | 1696318671.1977308-CDS-E-siliculosus-1a_F_contig1243:31927..32059 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1243 31928..32059 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1243.1520.1 >prot_E-siliculosus-1a_F_contig1243.1520.1 ID=prot_E-siliculosus-1a_F_contig1243.1520.1|Name=mRNA_E-siliculosus-1a_F_contig1243.1520.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=134bp
MVQWEEDVDALRNQLGAERKAREDDRRDLESVIFDLEDEVDDLKERYRQR
RKPVAKKKKRGEAASGDNEQRSREAGPSGTGLMGRSDAGNGSRRRRTERE
TEERSQERSKKISDERDAAGQWRKAMTLLQYLD* back to topmRNA from alignment at E-siliculosus-1a_F_contig1243:29288..33546- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1243.1520.1 ID=mRNA_E-siliculosus-1a_F_contig1243.1520.1|Name=mRNA_E-siliculosus-1a_F_contig1243.1520.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4259bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1243:29288..33546- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGATCGACAGGGAGTCATCATCATCGCCGTCGTCGAAACAGACGATAAC
GCCTCCTTCTACAACGGGGATCTCAGCTGCTGCTGCTGCTGCGGCGGCGG
CGGCGGGCGTCGAGAACGATGAGGAGAGAGCGTTCAGGGAGGCCGGCGTG
AACAGGGTGGTGGACGGGCTGAGGGCGGAGAACACGAGGCTGCGGCAGAG
GTTGCGGTCGGCGGAGCGCGCCGCAGAGTCGGGGGAAGATCGGGCCAACG
GTGAGATGCAGAGCGATATATCGGTTTTACAATATCAACGGTACATGCAG
GTTTTTCGCTGTCACACTACATCCTACCGGTATACCAAAACGATATAGAT
ATACCACTCCGAATCCTATACATCACAGGGAGAGGGAGGGCGCGAGAGCT
GCGTCGAGCAGCGGTAAAGAAGTGCCGTGTGAGGTGGAGACATGTCACCC
CCCCCCCGGACCGATTTTCCAAACTCAATTGTTCCACAACCAAGCTTGTG
CCAACACCTAGACAATCTGGAAACATCTCGCCGACGGGGTTCCATAGAAT
TTTCTGGCTCTACGCGGAGAGAGAGACTGTCGATTCAGGTCTGGCGTCAC
ATACTATCTCCTTGTAGTATCAAACAGTGGAGGCAGAGAGACGCTGGGCC
GATGATTTGTTTTCCGGCTACATGTGCATACGTGTATATCGCTATTATGC
ATACTTGTATCAAACGGTGGAGGCGGAGGGAGGCTGAGCCGATGATTTGT
TTTCCCGCTACATGTGTACATATGCATATCGCTTTCATGCCTACTTGTAT
CAAACGGTGGAGGCGGAGGGAGGCTGAGCCGATGATTTGTTTTCCCGCTA
CATGTGTACATATGCATATCGCTTTCATGCCTACTTGTATCAAATAGTGG
AGGCGGAGAGGGCCGATGCTCTGGAGGCAGAGCTGGGTCGAGTTCGGGCT
ACTGTGAAGGGGAGAGTCCGGGCACTCAAGGCGGCCCTGGAAGAGGCGGA
GGAAGACGCAGACAGGCAAGATCAAGGGGGGGGGGGGGGGGGGTACTCAT
GCCCAGGAGGGTCTATTGTTTACCAGGATTTAGTGAGATTTTAGTACACT
CATGTATTGTAATTGCTTGCCTTGTAGGATTTAGTGTGGTATAGAAAAGC
GTACATGTCATTATTGTCTACTGGTAGGATTTTAGTGCGATGTATTTGAG
TGGGAGGGTCCGGGTAGAGAAGGAGTCCAATGTAGTGGACTGCTTTTCGC
AAAAATACGCGTAAAGTTAAAGTTTTCGTTCTACATCCTTCTCAGCGACA
GACAGCCCTGTCGGCACTAAATCTTTCATTTTTTATTGAGTTACTGTCCT
TTACCTCAGCATCCACGTCATGTGTATAATAGCAAGCATTTTCGACCGTA
CGACAACACCAACAAGTCACCCACCCCCCCACCTGATATTGTTCTTTCTT
TGTGCGCAACAGGGCTGTCGCTGAAAAGAAGGGGTTCATGGTTCAGTGGG
AGGAGGACGTGGACGCGCTGAGAAATCAGCTTGGCGCGGAGAGGAAGGCG
AGGGAGGACGACAGGCGGGATCTGGAGAGCGTCATCTTCGACTTGGAGGA
CGAGGTTGACGATCTAAAGGTGAACGAATCGCCTCATTTTAGCTAACCCT
GTCCCTAACCCTAGCCCTAAGAAAATGAATACTCTAGCAGTAGAGAGATT
CGCCTAGCTTCCTCCACCAAGAGGAACTGACGCAACCAATCGAACAGGGC
ACCGAACAACGTGTTTGTTTTCTTGTCTTTTGGTGCATCCGTAAGAATAA
CGATCATTTAAACATCACACGGTGTTGGCGGGCTTCCCCTACATCGGCAT
CAAGACGATGTGAATTATGCAAAATCTAGGATTGAGGCATGGCGCTACGT
CAAGGGGGTGAAGAAAAGCATGGCAAAAATACCTCTCTGAACCGGAACAA
AAAACTGCCTGAAACCGCTGAAAAATACGTGTTCGCGGAGAGATTCGCCT
AGCTACCCAACCACATGATTTTTATTTTTTCGTTTTGGTGCATCGTTTAT
TGACGGAAGTGTGTGGGTTTAGGCCGTGTTTTTCGGTGGCGGTTGCTGCT
GCGGTAAGCAGGCTTGCGTGACTCAATGAATAAGATGGCGGCAGAAGAAC
TAGCATGTTCGTGAACAGGCTTTTCGCTAGCCAGAGGAATGTTTCTGATC
GTTTCGCTAGCCAGAGGAATGTTTCTGACCCGTCCAGGTTCACCTACACA
TGCTGCTCAATAAGGGCTTTTCGCTTGGAAGAATAATTTATGTCACCCCT
TGAGTCCTTTTTGCACTACTCATGCTGCTCGTGAAGAGCTTCACGCTGCA
GTGGTCAGAAAACCTCGTGTTCCCCCTGGAGTCCATTTTCAACTACAGAT
GCTGTTTGTGACGGGCAGAGACAGCGCTGTCCAGGCAACTGCCTCCGTTC
CCCCTCGAGTCGTTTTTTTAGCTTCACATGCTACTTGTGAAGGGCTCATC
GCTGTCCAGACAGCTGTTTCTGTTCCCCTCGAGGCCATTTTCAACTGTCT
ACCCATGCTGCTCATGAAGGACATTTCTCTTCTCGCCAGCTAGACTTGTG
CCATCTGTCAACGATGTGCAACACCATCTGGAAAGATTTGGCTGAGACAC
TGCTGTTTATTTTTATTTTTGTTTTGAAGCAGTCCAAAACCCACGGTAGG
AACCGTGTTGCATCTGGTATTCGTTATGTGGTACCGCTCTGTACGGTAGT
CTCCACGCAAACACGCTCGACTCATTAGTAAGTTCCAGGTACTGTTCCCT
AAATATTCTACCCCGTGGATCTAGGACGTTACGCGTATCCTTTGTTGTGG
TTGCTTCCCGTTTCTCCTCCCTCCCGCTACCCCCGATTCAGCATCCGTCT
TCAGCCTCCCCCCCCCCCGCCCCAAAGTAGTCGCCAACCGCGTGCCGGCT
TGGAATTTGATTGAGATGTTGAAAGACGGCCAATGTGTGCGGGGAAACAA
CATGTTGTCGGTGCGACACCATGTTACTCTTCACAATGCAAGGTTGGGCA
GTGCCGATGGCTTTTGGCGGACACACTCTCTGAATCATGAGGTAATTCAG
TACTTTGAAAGCGCCGGTTCCTCTGAGTGGTGCCGTTGTTCTGGTCTGGT
CCAGGGAGGGCTCCTACTGTTACAGATTACGCCCTCCACTTGAACCCCAA
CAAGACGTCATGTTCAACATCATTGCGGCAAAGAAGCCCAGCACCATTGC
TAGCCCGGTTTCAAGACCCCCTTCACTAAATTGGACCTATGTTTGTGGCC
ATTTGCGGCCGACTAAGAACCTCAGCCTCGACCAAAACTAGAGGTTCTTA
ACTGCCGAGCGCTATCTTGATTGGTTGATTCTCCTCGGGCGCAGGAGCGC
TACCGGCAGCGGAGGAAGCCGGTCGCCAAGAAAAAGAAGCGAGGAGAAGC
AGCTTCGGGAGACAACGAACAACGTTCGCGGGAGGCTGGGCCGTCCGGCA
CTGGGCTCATGGGTAGAAGTGACGCGGGGAACGGTTCGCGACGGCGGAGA
ACGGAACGGGAGACGGAAGAACGTTCCCAGGAAAGGTCCAAGAAAATATC
CGACGAGAGGGACGCCGCGGGGCAGTGGCGGAAGGCCATGACTCTGTTGC
AATACTTGGACTGAAAATCAACGTCTGTGCGATTCGTGTTTTTTTTTAGC
ACACGGTCGGTGTGTGTTTTCGGTCGTCCTTGTTCTGCCGGTATTTTTCT
GCATTCCGAAGACGTCGTTGTACCATATTTTTTTCGTTGTCGGGAGGTCG
ATTTGAACCACTTCCGTAAAGCTGCCTCGGATTTCCATTTTCGTACCGTG
GAACCTTCCGCGCACTCAACACCGTTTTCCGGCATAGTTTTTACATCTCA
GGTAAGGCGAAAGTGGGATGTTGCAAATTGGAAGCGAAGGACGGCATTTT
GTCACGGACGCGAATTTTTTTTCTCAAAAGGGTTTTCGACGATTTTTGCG
ATTCTGGTGGTGTTTTTTTTTAGTTTTTTTAGCGTGTACCAATCGGGGTG
TGTGTCAAGAGCCCTCAGAAAGTGACATCGTTTTAGAGAAAGGGTGCGGG
ACCCGCAGCAAAAAAACAACAGTATAAAAAAAAGAGACAAGTGTTTTTAT
GATGCATGGATCGAAAAATCGGAGGCAAGCACCGCAGGAGGGGTGGGTAT
GGCAGGAACCCTTCTGTGTGACCACAGGTTGGGGGCTGAAAAGGACATGC
TATGAACAC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1243:29288..33546- >mRNA_E-siliculosus-1a_F_contig1243.1520.1 ID=mRNA_E-siliculosus-1a_F_contig1243.1520.1|Name=mRNA_E-siliculosus-1a_F_contig1243.1520.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=804bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1243:29288..33546- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTTCAGTGGGAGGAGGACGTGGACGCGCTGAGAAATCAGCTTGGCGC
GGAGAGGAAGGCGAGGGAGGACGACAGGCGGGATCTGGAGAGCGTCATCT
TCGACTTGGAGGACGAGGTTGACGATCTAAAGATGGTTCAGTGGGAGGAG
GACGTGGACGCGCTGAGAAATCAGCTTGGCGCGGAGAGGAAGGCGAGGGA
GGACGACAGGCGGGATCTGGAGAGCGTCATCTTCGACTTGGAGGACGAGG
TTGACGATCTAAAGGAGCGCTACCGGCAGCGGAGGAAGCCGGTCGCCAAG
AAAAAGAAGCGAGGAGAAGCAGCTTCGGGAGACAACGAACAACGTTCGCG
GGAGGCTGGGCCGTCCGGCACTGGGCTCATGGGTAGAAGTGACGCGGGGA
ACGGTTCGCGACGGCGGAGAACGGAACGGGAGACGGAAGAACGTTCCCAG
GAAAGGTCCAAGAAAATATCCGACGAGAGGGACGCCGCGGGGCAGTGGCG
GAAGGCCATGACTCTGTTGCAATACTTGGACTGAGAGCGCTACCGGCAGC
GGAGGAAGCCGGTCGCCAAGAAAAAGAAGCGAGGAGAAGCAGCTTCGGGA
GACAACGAACAACGTTCGCGGGAGGCTGGGCCGTCCGGCACTGGGCTCAT
GGGTAGAAGTGACGCGGGGAACGGTTCGCGACGGCGGAGAACGGAACGGG
AGACGGAAGAACGTTCCCAGGAAAGGTCCAAGAAAATATCCGACGAGAGG
GACGCCGCGGGGCAGTGGCGGAAGGCCATGACTCTGTTGCAATACTTGGA
CTGA back to top
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