mRNA_E-siliculosus-1a_F_contig12407.1511.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12407.1511.1
Unique NamemRNA_E-siliculosus-1a_F_contig12407.1511.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12407.1511.1 vs. uniprot
Match: A0A1I9LVJ7_9PHAE (30S ribosomal protein S14, chloroplastic n=5 Tax=Ectocarpales TaxID=2877 RepID=A0A1I9LVJ7_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.220e-34
Identity = 55/60 (91.67%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 MQLHKKIEKLPRNSSRIRLRNRCWRTGRSRGIYRDFGLCRHMIRDMAHNGMLPGVRKASW 180
            M LHKKIEKLPRNSSRIRLRNRCWRTGRSRG+Y+DFGLCRHMIR+MAHNG+LPGVRKASW
Sbjct:   41 MGLHKKIEKLPRNSSRIRLRNRCWRTGRSRGVYKDFGLCRHMIREMAHNGILPGVRKASW 100
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BLAST of mRNA_E-siliculosus-1a_F_contig12407.1511.1 vs. uniprot
Match: A0A0R6M4Q0_UNDPI (30S ribosomal protein S14, chloroplastic n=31 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M4Q0_UNDPI)

HSP 1 Score: 118 bits (295), Expect = 2.870e-33
Identity = 52/60 (86.67%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 MQLHKKIEKLPRNSSRIRLRNRCWRTGRSRGIYRDFGLCRHMIRDMAHNGMLPGVRKASW 180
            M++HKKIEKLPRNSSRIRLRNRCWRTGRSRG+YRDFGLCRHM+R+M HN +LPGVRKASW
Sbjct:   41 MEVHKKIEKLPRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMVREMGHNCLLPGVRKASW 100
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BLAST of mRNA_E-siliculosus-1a_F_contig12407.1511.1 vs. uniprot
Match: A0A8F0FAM9_9PHAE (Ribosomal protein S14 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAM9_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 4.070e-33
Identity = 52/60 (86.67%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 MQLHKKIEKLPRNSSRIRLRNRCWRTGRSRGIYRDFGLCRHMIRDMAHNGMLPGVRKASW 180
            M++HKKIEKLPRNS++IRLRNRCWRTGRSRG+YRDFGLCRHMIR+MAHN +LPGVRKASW
Sbjct:   41 MEIHKKIEKLPRNSAKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCILPGVRKASW 100
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12407.1511.1 vs. uniprot
Match: A0A7S6U9W6_9STRA (30S ribosomal protein S14, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9W6_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.070e-33
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 MQLHKKIEKLPRNSSRIRLRNRCWRTGRSRGIYRDFGLCRHMIRDMAHNGMLPGVRKASW 180
            M LHKKIEKLPRNSSRIRLRNRCWRTGRSRG YRDFGLCRHMIR+M HNG+LPG+RK+SW
Sbjct:   41 MLLHKKIEKLPRNSSRIRLRNRCWRTGRSRGTYRDFGLCRHMIREMGHNGLLPGLRKSSW 100
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12407.1511.1 vs. uniprot
Match: A0A2R4QPV6_9PHAE (30S ribosomal protein S14 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPV6_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 5.780e-33
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 MQLHKKIEKLPRNSSRIRLRNRCWRTGRSRGIYRDFGLCRHMIRDMAHNGMLPGVRKASW 180
            M++ KKIEKLPRNSSRIRLRNRCWRTGRSRG+YRDFGLCRHMIR+MAHN +LPGVRKASW
Sbjct:   41 MEIRKKIEKLPRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVRKASW 100
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12407.1511.1 vs. uniprot
Match: A0A2I4Q2G1_9PHAE (30S ribosomal protein S14, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2G1_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.660e-32
Identity = 50/58 (86.21%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    7 LHKKIEKLPRNSSRIRLRNRCWRTGRSRGIYRDFGLCRHMIRDMAHNGMLPGVRKASW 180
            +H+KIEKLPRNSS IR+RNRCW+TGRSRG+YRDFGLCRHM+R+MAHNGMLPGVRKASW
Sbjct:   43 IHQKIEKLPRNSSNIRIRNRCWQTGRSRGVYRDFGLCRHMLREMAHNGMLPGVRKASW 100
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12407.1511.1 vs. uniprot
Match: A0A8F0F7A7_9PHAE (Ribosomal protein S14 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7A7_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 6.750e-32
Identity = 52/60 (86.67%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 MQLHKKIEKLPRNSSRIRLRNRCWRTGRSRGIYRDFGLCRHMIRDMAHNGMLPGVRKASW 180
            M++HKKIE+LPRNSS IRLRNRCWRTGRSRGIYRDFGLCRHMIR+MAH+ +LPGVRKASW
Sbjct:   41 MEIHKKIEQLPRNSSMIRLRNRCWRTGRSRGIYRDFGLCRHMIREMAHDCILPGVRKASW 100
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12407.1511.1 vs. uniprot
Match: A0A8E5XRG5_9PHAE (30S ribosomal protein S14, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRG5_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.120e-30
Identity = 47/60 (78.33%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 MQLHKKIEKLPRNSSRIRLRNRCWRTGRSRGIYRDFGLCRHMIRDMAHNGMLPGVRKASW 180
            M+ H+KIE+LP+NSS+IRLRNRCWRTGRSRG+YRDFGLCRHMIR+M H G LPG+RK+SW
Sbjct:   41 METHRKIERLPKNSSKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMGHTGTLPGIRKSSW 100
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12407.1511.1 vs. uniprot
Match: A0A1L2F1U9_9PHAE (Ribosomal protein S14 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1U9_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 3.210e-30
Identity = 47/60 (78.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 MQLHKKIEKLPRNSSRIRLRNRCWRTGRSRGIYRDFGLCRHMIRDMAHNGMLPGVRKASW 180
            MQ++++I+KLPRNSS+IRL+NRCWRTGR+RG+YRDFGLCRHMIR+MAHN +LPGV+KASW
Sbjct:   41 MQINRRIQKLPRNSSKIRLKNRCWRTGRTRGVYRDFGLCRHMIREMAHNCILPGVKKASW 100
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12407.1511.1 vs. uniprot
Match: A0A141BSF2_9PHAE (30S ribosomal protein S14, chloroplastic n=13 Tax=Sargassum TaxID=3015 RepID=A0A141BSF2_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.850e-29
Identity = 48/60 (80.00%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 MQLHKKIEKLPRNSSRIRLRNRCWRTGRSRGIYRDFGLCRHMIRDMAHNGMLPGVRKASW 180
            MQ+++KI+KLPRNSS+IRLRNRCWRTGR+RG+YRDFGLCRHMIR+MA N +LPGV+KASW
Sbjct:   41 MQINRKIQKLPRNSSKIRLRNRCWRTGRTRGVYRDFGLCRHMIREMALNCILPGVKKASW 100
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12407.1511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1I9LVJ7_9PHAE1.220e-3491.6730S ribosomal protein S14, chloroplastic n=5 Tax=E... [more]
A0A0R6M4Q0_UNDPI2.870e-3386.6730S ribosomal protein S14, chloroplastic n=31 Tax=... [more]
A0A8F0FAM9_9PHAE4.070e-3386.67Ribosomal protein S14 n=1 Tax=Desmarestia aculeata... [more]
A0A7S6U9W6_9STRA4.070e-3388.3330S ribosomal protein S14, chloroplastic n=1 Tax=S... [more]
A0A2R4QPV6_9PHAE5.780e-3388.3330S ribosomal protein S14 n=3 Tax=Fucaceae TaxID=3... [more]
A0A2I4Q2G1_9PHAE1.660e-3286.2130S ribosomal protein S14, chloroplastic n=1 Tax=D... [more]
A0A8F0F7A7_9PHAE6.750e-3286.67Ribosomal protein S14 n=1 Tax=Protohalopteris sp. ... [more]
A0A8E5XRG5_9PHAE1.120e-3078.3330S ribosomal protein S14, chloroplastic n=1 Tax=I... [more]
A0A1L2F1U9_9PHAE3.210e-3078.33Ribosomal protein S14 n=1 Tax=Coccophora langsdorf... [more]
A0A141BSF2_9PHAE1.850e-2980.0030S ribosomal protein S14, chloroplastic n=13 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12407contigE-siliculosus-1a_F_contig12407:15..197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size183
Model size183
Exons1
Hectar predicted targeting categoryother localisation
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03019
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EC3.6.4.13
EggNOG OGsCOG0199@1,KOG1741@2759
EggNOG free text desc.structural constituent of ribosome
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003735,GO:0003824,GO:0004004,GO:0004386,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006139,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0042623,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070035,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
KEGG ModuleM00178,M00179
KEGG Pathwayko03010,map03010
KEGG koko:K02954,ko:K20101
Preferred namerps14
Seed eggNOG ortholog2880.D1J7A5
Seed ortholog evalue2.5e-28
Seed ortholog score130.6
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927763.469939-CDS-E-siliculosus-1a_F_contig12407:14..1971622927763.469939-CDS-E-siliculosus-1a_F_contig12407:14..197Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12407 15..197 +
1696318670.514764-CDS-E-siliculosus-1a_F_contig12407:14..1971696318670.514764-CDS-E-siliculosus-1a_F_contig12407:14..197Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12407 15..197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12407.1511.1prot_E-siliculosus-1a_F_contig12407.1511.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12407 15..197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12407.1511.1

>prot_E-siliculosus-1a_F_contig12407.1511.1 ID=prot_E-siliculosus-1a_F_contig12407.1511.1|Name=mRNA_E-siliculosus-1a_F_contig12407.1511.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=61bp
MQLHKKIEKLPRNSSRIRLRNRCWRTGRSRGIYRDFGLCRHMIRDMAHNG
MLPGVRKASW*
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mRNA from alignment at E-siliculosus-1a_F_contig12407:15..197+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12407.1511.1 ID=mRNA_E-siliculosus-1a_F_contig12407.1511.1|Name=mRNA_E-siliculosus-1a_F_contig12407.1511.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=183bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12407:15..197+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAACTCCATAAAAAAATAGAAAAACTACCACGAAATAGTTCCCGAAT
AAGATTACGTAATCGATGCTGGCGAACTGGTCGTAGTAGAGGTATTTATA
GAGATTTTGGATTATGTCGTCATATGATTAGAGATATGGCACATAATGGT
ATGTTACCAGGTGTACGAAAAGCTAGTTGGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12407:15..197+

>mRNA_E-siliculosus-1a_F_contig12407.1511.1 ID=mRNA_E-siliculosus-1a_F_contig12407.1511.1|Name=mRNA_E-siliculosus-1a_F_contig12407.1511.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=366bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12407:15..197+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAACTCCATAAAAAAATAGAAAAACTACCACGAAATAGTTCCCGAAT
AAGATTACGTAATCGATGCTGGCGAACTGGTCGTAGTAGAGGTATTTATA
GAGATTTTGGATTATGTCGTCATATGATTAGAGATATGGCACATAATGGT
ATGTTACCAGGTGTACGAAAAGCTAGTTGGTAAATGCAACTCCATAAAAA
AATAGAAAAACTACCACGAAATAGTTCCCGAATAAGATTACGTAATCGAT
GCTGGCGAACTGGTCGTAGTAGAGGTATTTATAGAGATTTTGGATTATGT
CGTCATATGATTAGAGATATGGCACATAATGGTATGTTACCAGGTGTACG
AAAAGCTAGTTGGTAA
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