mRNA_E-siliculosus-1a_F_contig124.1500.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig124.1500.1
Unique NamemRNA_E-siliculosus-1a_F_contig124.1500.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig124.1500.1 vs. uniprot
Match: A0A6H5L334_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L334_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 4.610e-43
Identity = 82/94 (87.23%), Postives = 83/94 (88.30%), Query Frame = 3 
Query:    3 SVVSCTQADVDFGGGSGSTTTGRQGSTDDTSARVGQDGDSPCPERSGRASLDCTNVGDRGEGQDEAPRSGEGQHLALSGNRVYSIDQGSTTISA 284
            S VSCTQA+VDF GGSGSTTTGRQGSTDD  ARVGQDGDSPCPER G ASLDCTNVG RGEGQ EAPRSGEGQHLA  GN VYSIDQGSTTISA
Sbjct:  267 SAVSCTQAEVDFSGGSGSTTTGRQGSTDDKFARVGQDGDSPCPERLGSASLDCTNVGGRGEGQGEAPRSGEGQHLASRGNGVYSIDQGSTTISA 360
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BLAST of mRNA_E-siliculosus-1a_F_contig124.1500.1 vs. uniprot
Match: D7FZV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV8_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 6.230e-42
Identity = 82/95 (86.32%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    1 RQSFPAHKRTWILAGGVAAPQQAAKAAQTTRLLASDRTAIHLALNGRAELVLTAPTSGTAGKGRTRRLVAVKGNTLH*AEIEFIPSTRVRRRYQR 285
            RQ FPA KR W+LAG VA PQQAAKAA+TTRLLASDRTAIHLALN RA LVLTA TSGTAGKGRTRRLVAVKGNTL  AE EFIPSTRVRRRYQR
Sbjct:  204 RQPFPARKRRWVLAGEVAVPQQAAKAARTTRLLASDRTAIHLALNCRAVLVLTATTSGTAGKGRTRRLVAVKGNTLLRAEKEFIPSTRVRRRYQR 298
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig124.1500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L334_9PHAE4.610e-4387.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZV8_ECTSI6.230e-4286.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig124contigE-siliculosus-1a_F_contig124:19206..19490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size234
Model size285
Exons1
Hectar predicted targeting categoryother localisation
Ec32 orthologEc-22_003900.1
Ec32 ortholog descriptionEF-hand domain pair
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927761.5243556-CDS-E-siliculosus-1a_F_contig124:19205..194391622927761.5243556-CDS-E-siliculosus-1a_F_contig124:19205..19439Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig124 19206..19439 +
1696318669.519135-CDS-E-siliculosus-1a_F_contig124:19205..194391696318669.519135-CDS-E-siliculosus-1a_F_contig124:19205..19439Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig124 19206..19439 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927761.5353029-UTR-E-siliculosus-1a_F_contig124:19439..194901622927761.5353029-UTR-E-siliculosus-1a_F_contig124:19439..19490Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig124 19440..19490 +
1696318669.527584-UTR-E-siliculosus-1a_F_contig124:19439..194901696318669.527584-UTR-E-siliculosus-1a_F_contig124:19439..19490Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig124 19440..19490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig124.1500.1prot_E-siliculosus-1a_F_contig124.1500.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig124 19206..19439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig124.1500.1

>prot_E-siliculosus-1a_F_contig124.1500.1 ID=prot_E-siliculosus-1a_F_contig124.1500.1|Name=mRNA_E-siliculosus-1a_F_contig124.1500.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=78bp
RQSFPAHKRTWILAGGVAAPQQAAKAAQTTRLLASDRTAIHLALNGRAEL
VLTAPTSGTAGKGRTRRLVAVKGNTLH*
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mRNA from alignment at E-siliculosus-1a_F_contig124:19206..19490+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig124.1500.1 ID=mRNA_E-siliculosus-1a_F_contig124.1500.1|Name=mRNA_E-siliculosus-1a_F_contig124.1500.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=285bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig124:19206..19490+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGTCAGTCGTTTCCTGCACACAAGCGGACGTGGATTTTGGCGGGGGGAGT
GGCAGCACCACAACAGGCCGCCAAGGCAGCACAGACGACACGTCTGCTCG
CGTCGGACAGGACGGCGATTCACCTTGCCCTGAACGGTCGGGCAGAGCTA
GTCTTGACTGCACCAACGTCGGGGACCGCGGGGAAGGGCAGGACGAGGCG
CCTCGTAGCGGTGAAGGGCAACACCTTGCATTGAGCGGAAATAGAGTTTA
TTCCATCGACCAGGGTTCGACGACGATATCAGCGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig124:19206..19490+

>mRNA_E-siliculosus-1a_F_contig124.1500.1 ID=mRNA_E-siliculosus-1a_F_contig124.1500.1|Name=mRNA_E-siliculosus-1a_F_contig124.1500.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig124:19206..19490+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGTCAGTCGTTTCCTGCACACAAGCGGACGTGGATTTTGGCGGGGGGAGT
GGCAGCACCACAACAGGCCGCCAAGGCAGCACAGACGACACGTCTGCTCG
CGTCGGACAGGACGGCGATTCACCTTGCCCTGAACGGTCGGGCAGAGCTA
GTCTTGACTGCACCAACGTCGGGGACCGCGGGGAAGGGCAGGACGAGGCG
CCTCGTAGCGGTGAAGGGCAACACCTTGCATTGACGTCAGTCGTTTCCTG
CACACAAGCGGACGTGGATTTTGGCGGGGGGAGTGGCAGCACCACAACAG
GCCGCCAAGGCAGCACAGACGACACGTCTGCTCGCGTCGGACAGGACGGC
GATTCACCTTGCCCTGAACGGTCGGGCAGAGCTAGTCTTGACTGCACCAA
CGTCGGGGACCGCGGGGAAGGGCAGGACGAGGCGCCTCGTAGCGGTGAAG
GGCAACACCTTGCATTGA
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