mRNA_E-siliculosus-1a_F_contig12397.1496.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12397.1496.1
Unique NamemRNA_E-siliculosus-1a_F_contig12397.1496.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12397.1496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12397contigE-siliculosus-1a_F_contig12397:858..1493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size330
Model size636
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12397.1496.1prot_E-siliculosus-1a_F_contig12397.1496.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12397 914..1243 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927761.131971-UTR-E-siliculosus-1a_F_contig12397:857..9131622927761.131971-UTR-E-siliculosus-1a_F_contig12397:857..913Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12397 858..913 +
1696318669.382979-UTR-E-siliculosus-1a_F_contig12397:857..9131696318669.382979-UTR-E-siliculosus-1a_F_contig12397:857..913Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12397 858..913 +
1622927761.1792295-UTR-E-siliculosus-1a_F_contig12397:1243..14931622927761.1792295-UTR-E-siliculosus-1a_F_contig12397:1243..1493Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12397 1244..1493 +
1696318669.398033-UTR-E-siliculosus-1a_F_contig12397:1243..14931696318669.398033-UTR-E-siliculosus-1a_F_contig12397:1243..1493Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12397 1244..1493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927761.1507955-CDS-E-siliculosus-1a_F_contig12397:913..12431622927761.1507955-CDS-E-siliculosus-1a_F_contig12397:913..1243Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12397 914..1243 +
1696318669.3904252-CDS-E-siliculosus-1a_F_contig12397:913..12431696318669.3904252-CDS-E-siliculosus-1a_F_contig12397:913..1243Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12397 914..1243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12397.1496.1

>prot_E-siliculosus-1a_F_contig12397.1496.1 ID=prot_E-siliculosus-1a_F_contig12397.1496.1|Name=mRNA_E-siliculosus-1a_F_contig12397.1496.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=110bp
MWFCFLQKKSLEELSIPGCWLLNAPRLEEGDKLLQRQLSKDRNLVSPART
PNFSIIGEVRNRCRHPRVPRGSAETRERERETKTRRQMDMDMDGHGWLRT
HDACMRFML*
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mRNA from alignment at E-siliculosus-1a_F_contig12397:858..1493+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12397.1496.1 ID=mRNA_E-siliculosus-1a_F_contig12397.1496.1|Name=mRNA_E-siliculosus-1a_F_contig12397.1496.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=636bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12397:858..1493+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAAAAACGCCTTCAATAACCGCGGACCAAAAAAAATCAAATCTACATATA
GTAGATATGTGGTTTTGTTTTCTGCAGAAAAAGAGCTTAGAAGAGCTCTC
GATCCCCGGTTGTTGGTTGTTAAACGCCCCCCGGCTGGAGGAGGGTGATA
AACTGCTTCAGAGACAGCTGAGTAAGGATCGAAATCTTGTTAGCCCGGCT
AGAACCCCTAACTTTTCAATTATCGGCGAAGTGCGGAATAGATGCAGGCA
CCCAAGGGTTCCCAGGGGCTCCGCAGAAACGAGAGAGAGAGAGAGAGAGA
CAAAGACAAGAAGACAGATGGACATGGACATGGACGGACATGGCTGGCTC
CGTACGCATGATGCATGCATGCGTTTTATGTTGTAAAAATCGCGCATTGA
TTCCTCTGACTACAAGTGAGTACCATCACCAACAGACTTGAAAATATCAT
TCCCATCCTACCTCAGCCCCCCTGTCCTCCTGCCCAACCGCAGAACGACG
TCACCCCCCCCTGTCTGGCTAGTATTAGTGGTGCCGCAATGTAACCTCAC
ACGATTGATTGATTGATTCCATCGAAAAAAAAAATCAACTACATACGGTA
CGCACACCTTGCGTGACGGCTCTGAGTTACCTCGCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12397:858..1493+

>mRNA_E-siliculosus-1a_F_contig12397.1496.1 ID=mRNA_E-siliculosus-1a_F_contig12397.1496.1|Name=mRNA_E-siliculosus-1a_F_contig12397.1496.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=660bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12397:858..1493+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGGTTTTGTTTTCTGCAGAAAAAGAGCTTAGAAGAGCTCTCGATCCC
CGGTTGTTGGTTGTTAAACGCCCCCCGGCTGGAGGAGGGTGATAAACTGC
TTCAGAGACAGCTGAGTAAGGATCGAAATCTTGTTAGCCCGGCTAGAACC
CCTAACTTTTCAATTATCGGCGAAGTGCGGAATAGATGCAGGCACCCAAG
GGTTCCCAGGGGCTCCGCAGAAACGAGAGAGAGAGAGAGAGAGACAAAGA
CAAGAAGACAGATGGACATGGACATGGACGGACATGGCTGGCTCCGTACG
CATGATGCATGCATGCGTTTTATGTTGTAAATGTGGTTTTGTTTTCTGCA
GAAAAAGAGCTTAGAAGAGCTCTCGATCCCCGGTTGTTGGTTGTTAAACG
CCCCCCGGCTGGAGGAGGGTGATAAACTGCTTCAGAGACAGCTGAGTAAG
GATCGAAATCTTGTTAGCCCGGCTAGAACCCCTAACTTTTCAATTATCGG
CGAAGTGCGGAATAGATGCAGGCACCCAAGGGTTCCCAGGGGCTCCGCAG
AAACGAGAGAGAGAGAGAGAGAGACAAAGACAAGAAGACAGATGGACATG
GACATGGACGGACATGGCTGGCTCCGTACGCATGATGCATGCATGCGTTT
TATGTTGTAA
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