mRNA_E-siliculosus-1a_F_contig12391.1494.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12391.1494.1
Unique NamemRNA_E-siliculosus-1a_F_contig12391.1494.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12391.1494.1 vs. uniprot
Match: D8LFB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFB9_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 5.100e-20
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 LLGTLLVKPRLAYLLVVCSIWPYPGAVSSSRVYVRWVPSHMIADVPCSHHTRFF 162
            LLGTLLVKPRLA LLVVCSI PYPGAVSSS VYVRWVPSH++ADV  +H+T  F
Sbjct:    4 LLGTLLVKPRLACLLVVCSILPYPGAVSSSVVYVRWVPSHIVADVH-AHNTPVF 56
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12391.1494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFB9_ECTSI5.100e-2079.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12391contigE-siliculosus-1a_F_contig12391:692..853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size162
Model size162
Exons1
Hectar predicted targeting categorysignal peptide
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927760.9963224-CDS-E-siliculosus-1a_F_contig12391:691..8531622927760.9963224-CDS-E-siliculosus-1a_F_contig12391:691..853Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12391 692..853 -
1696318669.3572662-CDS-E-siliculosus-1a_F_contig12391:691..8531696318669.3572662-CDS-E-siliculosus-1a_F_contig12391:691..853Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12391 692..853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12391.1494.1prot_E-siliculosus-1a_F_contig12391.1494.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12391 692..853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12391.1494.1

>prot_E-siliculosus-1a_F_contig12391.1494.1 ID=prot_E-siliculosus-1a_F_contig12391.1494.1|Name=mRNA_E-siliculosus-1a_F_contig12391.1494.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=54bp
LLGTLLVKPRLAYLLVVCSIWPYPGAVSSSRVYVRWVPSHMIADVPCSHH
TRFF
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mRNA from alignment at E-siliculosus-1a_F_contig12391:692..853-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12391.1494.1 ID=mRNA_E-siliculosus-1a_F_contig12391.1494.1|Name=mRNA_E-siliculosus-1a_F_contig12391.1494.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=162bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12391:692..853- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTCCTTGGAACTTTGCTGGTGAAACCCCGCTTGGCCTACCTACTTGTTGT
TTGCTCGATCTGGCCATACCCTGGTGCTGTATCATCTTCACGAGTCTATG
TACGCTGGGTGCCATCTCATATGATTGCAGATGTTCCATGCTCACACCAC
ACCCGATTTTTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12391:692..853-

>mRNA_E-siliculosus-1a_F_contig12391.1494.1 ID=mRNA_E-siliculosus-1a_F_contig12391.1494.1|Name=mRNA_E-siliculosus-1a_F_contig12391.1494.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=324bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12391:692..853- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTCCTTGGAACTTTGCTGGTGAAACCCCGCTTGGCCTACCTACTTGTTGT
TTGCTCGATCTGGCCATACCCTGGTGCTGTATCATCTTCACGAGTCTATG
TACGCTGGGTGCCATCTCATATGATTGCAGATGTTCCATGCTCACACCAC
ACCCGATTTTTTCTCCTTGGAACTTTGCTGGTGAAACCCCGCTTGGCCTA
CCTACTTGTTGTTTGCTCGATCTGGCCATACCCTGGTGCTGTATCATCTT
CACGAGTCTATGTACGCTGGGTGCCATCTCATATGATTGCAGATGTTCCA
TGCTCACACCACACCCGATTTTTT
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