mRNA_E-siliculosus-1a_F_contig12389.1490.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12389.1490.1
Unique NamemRNA_E-siliculosus-1a_F_contig12389.1490.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12389.1490.1 vs. uniprot
Match: D7FGP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGP4_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.960e-28
Identity = 52/58 (89.66%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    1 TKVDESVRRAWQIDGSLLGLSNEFAQAVGKKYALHAAEKLGLRAKALGLEARLYKLVM 174
            TKVDES+RRAWQIDGSLLGLSNE AQAVGKKYALHAAE+LGLR KALG+EARLYKLV+
Sbjct:    5 TKVDESLRRAWQIDGSLLGLSNEVAQAVGKKYALHAAEELGLRTKALGVEARLYKLVI 62
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12389.1490.1 vs. uniprot
Match: D7FJ30_ECTSI (Catalase is an enzyme, present in all aerobic cells, that decomposes hydrogen peroxide to molecular n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ30_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 2.780e-27
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    1 TKVDESVRRAWQIDGSLLGLSNEFAQAVGKKYALHAAEKLGLRAKALGLEARLYKLVM 174
            TKVDESVRRAWQID SLLGLSNEFAQAVGKKYALHAA KLGLRAKALG+EARLYKLVM
Sbjct:   87 TKVDESVRRAWQIDASLLGLSNEFAQAVGKKYALHAAGKLGLRAKALGVEARLYKLVM 144
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12389.1490.1 vs. uniprot
Match: D7FJ33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ33_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.300e-10
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 TKVDESVRRAWQIDGSLLGLSNEFAQAVGKKYALHAAEKLGLRAKALG 144
            TKVDESVRRAWQIDGSLLGLSNEFA + G++  L    K G  ++ LG
Sbjct:   88 TKVDESVRRAWQIDGSLLGLSNEFAPSRGEEVRLARCGKAGAESQGLG 135
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12389.1490.1 vs. uniprot
Match: D8RUL2_SELML (2OG-FeII_Oxy_3 domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RUL2_SELML)

HSP 1 Score: 48.5 bits (114), Expect = 5.330e-5
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:    1 TKVDESVRRAWQIDGSLLGLSN--EFAQAVGKKYALHAAEKLGLRAKALGLEARLYKLVM 174
            T  D ++RRAWQ++ S +      +F  AV    A+ A E+LG+ A ALGL+ RLYKL++
Sbjct:   69 TLFDTTIRRAWQVEASKVSCPQMPDFFSAVVLNLAVPAMEELGIDAAALGLDVRLYKLLL 128
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig12389.1490.1 vs. uniprot
Match: D8RNN1_SELML (2OG-FeII_Oxy_3 domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RNN1_SELML)

HSP 1 Score: 47.8 bits (112), Expect = 9.980e-5
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:    1 TKVDESVRRAWQIDGSLLGLSN--EFAQAVGKKYALHAAEKLGLRAKALGLEARLYKLVM 174
            T +D  VRRAWQ+D S +      +F   V    A+ A E++G+ A ALGL+ RLYKL++
Sbjct:   81 TLLDTDVRRAWQVDASKVSCPQIPDFFSKVVLDMAVPAMEEMGIDAAALGLDVRLYKLLL 140
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12389.1490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FGP4_ECTSI2.960e-2889.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJ30_ECTSI2.780e-2794.83Catalase is an enzyme, present in all aerobic cell... [more]
D7FJ33_ECTSI1.300e-1064.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8RUL2_SELML5.330e-543.332OG-FeII_Oxy_3 domain-containing protein n=2 Tax=S... [more]
D8RNN1_SELML9.980e-543.332OG-FeII_Oxy_3 domain-containing protein n=2 Tax=S... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12389contigE-siliculosus-1a_F_contig12389:942..1118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size177
Model size177
Exons1
Ec32 orthologEc-00_000020.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927758.3458042-CDS-E-siliculosus-1a_F_contig12389:941..11181622927758.3458042-CDS-E-siliculosus-1a_F_contig12389:941..1118Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12389 942..1118 +
1696318668.8772166-CDS-E-siliculosus-1a_F_contig12389:941..11181696318668.8772166-CDS-E-siliculosus-1a_F_contig12389:941..1118Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12389 942..1118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12389.1490.1prot_E-siliculosus-1a_F_contig12389.1490.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12389 942..1118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12389.1490.1

>prot_E-siliculosus-1a_F_contig12389.1490.1 ID=prot_E-siliculosus-1a_F_contig12389.1490.1|Name=mRNA_E-siliculosus-1a_F_contig12389.1490.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=59bp
TKVDESVRRAWQIDGSLLGLSNEFAQAVGKKYALHAAEKLGLRAKALGLE
ARLYKLVM*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig12389:942..1118+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12389.1490.1 ID=mRNA_E-siliculosus-1a_F_contig12389.1490.1|Name=mRNA_E-siliculosus-1a_F_contig12389.1490.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=177bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12389:942..1118+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACGAAGGTGGACGAGAGCGTGCGTCGTGCGTGGCAGATCGACGGCTCCCT
CCTCGGGCTCTCGAACGAGTTTGCTCAAGCCGTAGGGAAGAAGTACGCCT
TGCACGCCGCGGAAAAGCTGGGGTTGAGGGCCAAGGCCTTGGGCCTGGAG
GCCAGGCTGTACAAGCTCGTGATGTGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12389:942..1118+

>mRNA_E-siliculosus-1a_F_contig12389.1490.1 ID=mRNA_E-siliculosus-1a_F_contig12389.1490.1|Name=mRNA_E-siliculosus-1a_F_contig12389.1490.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=354bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12389:942..1118+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACGAAGGTGGACGAGAGCGTGCGTCGTGCGTGGCAGATCGACGGCTCCCT
CCTCGGGCTCTCGAACGAGTTTGCTCAAGCCGTAGGGAAGAAGTACGCCT
TGCACGCCGCGGAAAAGCTGGGGTTGAGGGCCAAGGCCTTGGGCCTGGAG
GCCAGGCTGTACAAGCTCGTGATGTGAACGAAGGTGGACGAGAGCGTGCG
TCGTGCGTGGCAGATCGACGGCTCCCTCCTCGGGCTCTCGAACGAGTTTG
CTCAAGCCGTAGGGAAGAAGTACGCCTTGCACGCCGCGGAAAAGCTGGGG
TTGAGGGCCAAGGCCTTGGGCCTGGAGGCCAGGCTGTACAAGCTCGTGAT
GTGA
back to top