mRNA_E-siliculosus-1a_F_contig12387.1489.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12387.1489.1
Unique NamemRNA_E-siliculosus-1a_F_contig12387.1489.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12387.1489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12387contigE-siliculosus-1a_F_contig12387:346..1327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size150
Model size150
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927758.2995458-CDS-E-siliculosus-1a_F_contig12387:345..4181622927758.2995458-CDS-E-siliculosus-1a_F_contig12387:345..418Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12387 346..418 -
1696318668.8579586-CDS-E-siliculosus-1a_F_contig12387:345..4181696318668.8579586-CDS-E-siliculosus-1a_F_contig12387:345..418Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12387 346..418 -
1622927758.3126223-CDS-E-siliculosus-1a_F_contig12387:1250..13271622927758.3126223-CDS-E-siliculosus-1a_F_contig12387:1250..1327Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12387 1251..1327 -
1696318668.8672047-CDS-E-siliculosus-1a_F_contig12387:1250..13271696318668.8672047-CDS-E-siliculosus-1a_F_contig12387:1250..1327Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12387 1251..1327 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12387.1489.1prot_E-siliculosus-1a_F_contig12387.1489.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12387 346..1327 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12387.1489.1

>prot_E-siliculosus-1a_F_contig12387.1489.1 ID=prot_E-siliculosus-1a_F_contig12387.1489.1|Name=mRNA_E-siliculosus-1a_F_contig12387.1489.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=50bp
GSIPPELGELAALQYLNLSDNDLVGEPIPPELGNLAALEGLYLQGNQLNG
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mRNA from alignment at E-siliculosus-1a_F_contig12387:346..1327-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12387.1489.1 ID=mRNA_E-siliculosus-1a_F_contig12387.1489.1|Name=mRNA_E-siliculosus-1a_F_contig12387.1489.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=982bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12387:346..1327- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTTCCATCCCCCCGGAGCTTGGAGAGCTCGCCGCACTGCAGTACCTCAA
CCTTTCGGATAACGACCTAGTCGGTGAGTTTGTTCATCATCACGTTTGAA
GCATGAATCCCGCGCACGCAGTGGGTGAGTACGAAATTTCGCAATTTGGG
AACTCGCGGGATATCTTTTGCTACGCGTGTGTTCTCGAAAGCCGGGGCAA
TTAAGTTTGTTTTCTCCCGCTACTCCCTCTTCCGATTGCAGGTTCCATCC
CGCCGGAGCTTGGAGAGCTCGCCGCGCTGCAGTACCTCTACCTCTCGGAT
AACCAGCCAACCGGTGAGTTTGTTCAGCAGTACGTGTTTGAAGCATGAAT
CTCGCCGATGCGTGCGCGGGATTTCATGCTTCAAACATGAACTGCTGAGC
AAACTCACCGGTTAGCTGGTTACGCGCGAATTTGAGTTCAACTAGTGCGG
CGAGCTTTCCAGCTCCGGCGGGATGGAACCTGCAATCGGAAGAGAGAGTA
GCGGGAGAAAACAAATTGAAATGCCCCGGATTTCGAGAACCCCGGCTTTC
GAGAACACACGCGTAGCAAAAGATATCCCGCGAGTTCCCAAATGGCGAAA
TTTCGTACCCGCCTACTAGTAGGCGTCCACGAAACTTCAGAACTCGCAAG
AAAACAAAACTCTTTTCGATCTATTCCAACTCACCATCTAACTTGTTTCT
GAAGAGACCGAGGACCTGGAGGGCGCCAAGCTGTCCGAGCTGCGGCGGAA
TGTGGCCTGTAGATGAACGAGTCAACGTAGGGCAATTTGGAAGAGTACAG
AAAAAGTTATCCCGCGAGTTGTGAAATTTCGTGGACGCCAACTGCGTAGG
TGAGTAGGTGTGTTCTAGAAGCCGGGATGAAATCATTTGGCTTTATATTC
TGCTTGCAGACCCATTCCCCCAGAGCTGGGAAACCTCGCAGCACTGGAGG
GGCTCTACCTGCAGGGAAACCAGCTCAACGGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12387:346..1327-

>mRNA_E-siliculosus-1a_F_contig12387.1489.1 ID=mRNA_E-siliculosus-1a_F_contig12387.1489.1|Name=mRNA_E-siliculosus-1a_F_contig12387.1489.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=300bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12387:346..1327- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTTCCATCCCCCCGGAGCTTGGAGAGCTCGCCGCACTGCAGTACCTCAA
CCTTTCGGATAACGACCTAGTCGGTGAGGTTCCATCCCCCCGGAGCTTGG
AGAGCTCGCCGCACTGCAGTACCTCAACCTTTCGGATAACGACCTAGTCG
GTGAACCCATTCCCCCAGAGCTGGGAAACCTCGCAGCACTGGAGGGGCTC
TACCTGCAGGGAAACCAGCTCAACGGTACCCATTCCCCCAGAGCTGGGAA
ACCTCGCAGCACTGGAGGGGCTCTACCTGCAGGGAAACCAGCTCAACGGT
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