mRNA_E-siliculosus-1a_F_contig1238.1487.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1238.1487.1
Unique NamemRNA_E-siliculosus-1a_F_contig1238.1487.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1487.1 vs. uniprot
Match: D8LIJ4_ECTSI (Pyruvate dehydrogenase E1 component subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIJ4_ECTSI)

HSP 1 Score: 631 bits (1627), Expect = 7.000e-225
Identity = 324/329 (98.48%), Postives = 326/329 (99.09%), Query Frame = 1
Query:    1 QVAVREAINQGLDEEMARDERVFLMGEEVAQYQGAYKVTKGLYQKYGEQRVIDTPITEMGFTGLATGAAYKDLRPVVEFMTFNFSLQAIDQILNSAAKQLYMSAGDCPVPVVFRGPNGAASGVGAQHSQCFAAWYSSVPALKVVSPWSSEDAKGLIKSAIRDPNPVVFLENELLYGVPFPMTDEAQGEDFVIPIGKAKVEQEGTDVSIVTFSKMVGTSLEAAEMLAAQGISVEVVNLRTLRPLDYGTVIKSVQKTNRLVTVEEGWPQNGIGADISAVVCEEAFDHLDAPIERVTGADVPMPYALNLERMALPSKEDIVSAVLRTTYRSK 987
            +VAVREAINQGLDEEM RDERVFLMGEEVAQYQGAYKVTKGLYQKYGEQRVIDTPITEMGFTGLATGAAYKDLRPVVEFMTFNFSLQAIDQILNSAAKQLYMSAGDCPVPVVFRGPNGAASGVGAQHSQCFAAWYSSVPALKVVSPWSSEDAKGLIKSAIRDPNPVVFLENELLYGV FPMTDEAQGEDFVIPIGKAKVEQEGTDVSIVTFSKMVGTSLEAAEMLAAQGIS EV+NLRTLRPLDYGTVIKSVQKTNRLVTVEEGWPQNGIGADISAVVCEEAFDHLDAPIERVTGADVPMPYALNLERMALPSKEDIVSAVLRTTYRSK
Sbjct:   34 EVAVREAINQGLDEEMGRDERVFLMGEEVAQYQGAYKVTKGLYQKYGEQRVIDTPITEMGFTGLATGAAYKDLRPVVEFMTFNFSLQAIDQILNSAAKQLYMSAGDCPVPVVFRGPNGAASGVGAQHSQCFAAWYSSVPALKVVSPWSSEDAKGLIKSAIRDPNPVVFLENELLYGVAFPMTDEAQGEDFVIPIGKAKVEQEGTDVSIVTFSKMVGTSLEAAEMLAAQGISAEVINLRTLRPLDYGTVIKSVQKTNRLVTVEEGWPQNGIGADISAVVCEEAFDHLDAPIERVTGADVPMPYALNLERMALPSKEDIVSAVLRTTYRSK 362          
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1487.1 vs. uniprot
Match: A0A835YH27_9STRA (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH27_9STRA)

HSP 1 Score: 520 bits (1340), Expect = 2.600e-181
Identity = 258/326 (79.14%), Postives = 292/326 (89.57%), Query Frame = 1
Query:   10 VREAINQGLDEEMARDERVFLMGEEVAQYQGAYKVTKGLYQKYGEQRVIDTPITEMGFTGLATGAAYKDLRPVVEFMTFNFSLQAIDQILNSAAKQLYMSAGDCPVPVVFRGPNGAASGVGAQHSQCFAAWYSSVPALKVVSPWSSEDAKGLIKSAIRDPNPVVFLENELLYGVPFPMTDEAQGEDFVIPIGKAKVEQEGTDVSIVTFSKMVGTSLEAAEMLAAQGISVEVVNLRTLRPLDYGTVIKSVQKTNRLVTVEEGWPQNGIGADISAVVCEEAFDHLDAPIERVTGADVPMPYALNLERMALPSKEDIVSAVLRTTYRSK 987
            VREAINQGLDEEM R+E VFL+GEEVAQYQGAYKVTKGLYQKYGE+RV+DTPITEMGFTGLA GAAYKDLRPVVEFMTFNFS+QAIDQ++NSAAKQLYM+AGD PVP+VFRGPNG+A+GV AQHSQCFAAWYSSVP LKVVSPWSSEDAKGLIKSAIRDPNPVV LENE+LYGV FPM+DEAQG+DF++PIG+AKVE+EGTD+++V  S+ VG  + AAE LA +GI  EV+NLRT+RP+DY TVI SV+KTNRLVTVEEGWPQNGIGADISA + EEAFD+LDAPIERVT ADVPMPY+  LE  A+P   DI++AV R  YR K
Sbjct:   33 VREAINQGLDEEMERNENVFLLGEEVAQYQGAYKVTKGLYQKYGEKRVLDTPITEMGFTGLAVGAAYKDLRPVVEFMTFNFSMQAIDQVINSAAKQLYMTAGDIPVPIVFRGPNGSAAGVAAQHSQCFAAWYSSVPGLKVVSPWSSEDAKGLIKSAIRDPNPVVVLENEMLYGVSFPMSDEAQGKDFLVPIGQAKVEKEGTDITLVAHSRAVGHCMAAAEQLAKEGIKAEVINLRTIRPMDYATVIASVKKTNRLVTVEEGWPQNGIGADISANIVEEAFDYLDAPIERVTAADVPMPYSKPLEEAAVPQVPDILAAVKRALYREK 358          
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1487.1 vs. uniprot
Match: A0A7S2ME39_9STRA (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ME39_9STRA)

HSP 1 Score: 500 bits (1288), Expect = 3.760e-173
Identity = 250/330 (75.76%), Postives = 296/330 (89.70%), Query Frame = 1
Query:    1 QVAVREAINQGLDEEMARDERVFLMGEEVAQYQGAYKVTKGLYQKYGEQRVIDTPITEMGFTGLATGAAYKDLRPVVEFMTFNFSLQAIDQILNSAAKQLYMSAGDCPVPVVFRGPNGAASGVGAQHSQCFAAWYSSVPALKVVSPWSSEDAKGLIKSAIRDPNPVVFLENELLYGVPFPMTDEAQGEDFVIPIGKAKVEQEGTDVSIVTFSKMVGTSLEAAEMLAAQ-GISVEVVNLRTLRPLDYGTVIKSVQKTNRLVTVEEGWPQNGIGADISAVVCE-EAFDHLDAPIERVTGADVPMPYALNLERMALPSKEDIVSAVLRTTYRS 984
            +V +REA+N  LDEEMARD+ VF+MGEEVAQYQGAYKVTKGLYQKYG++RVIDTPITEMGFTGLA GAAYKDLRPVVEFMTFNFS+QAIDQ++NSAAKQLYMSAG  PVP+VFRGPNGAA+GV AQHSQCFAAWY+SVP LKVV+PW++ED +GL+K+AIRDPNPV+FLENELLYGVPFP++DEAQ  DF + IGKA VE+EGTDV+IV FSKMVG SLEAA++LA Q  ++VEV+NLR++RPLD   ++KSV+KTNRLVTVEEGWPQ+G+G++I A + E EAFD+LDAP+ RVTGADVPMPY++ LE  ALP  E+IVSAVLRTT R+
Sbjct:   45 EVPLREALNTALDEEMARDDAVFIMGEEVAQYQGAYKVTKGLYQKYGDRRVIDTPITEMGFTGLACGAAYKDLRPVVEFMTFNFSMQAIDQVINSAAKQLYMSAGTIPVPIVFRGPNGAAAGVAAQHSQCFAAWYASVPGLKVVAPWNAEDCRGLLKAAIRDPNPVIFLENELLYGVPFPLSDEAQSPDFTLEIGKANVEKEGTDVTIVAFSKMVGYSLEAAKILAEQHDLNVEVINLRSIRPLDIPAIVKSVKKTNRLVTVEEGWPQHGVGSEICAAMMETEAFDYLDAPVARVTGADVPMPYSVILEACALPQIENIVSAVLRTTART 374          
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1487.1 vs. uniprot
Match: A0A7S2XVY3_9STRA (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVY3_9STRA)

HSP 1 Score: 491 bits (1265), Expect = 7.570e-170
Identity = 243/329 (73.86%), Postives = 289/329 (87.84%), Query Frame = 1
Query:    1 QVAVREAINQGLDEEMARDERVFLMGEEVAQYQGAYKVTKGLYQKYGEQRVIDTPITEMGFTGLATGAAYKDLRPVVEFMTFNFSLQAIDQILNSAAKQLYMSAGDCPVPVVFRGPNGAASGVGAQHSQCFAAWYSSVPALKVVSPWSSEDAKGLIKSAIRDPNPVVFLENELLYGVPFPMTDEAQGEDFVIPIGKAKVEQEGTDVSIVTFSKMVGTSLEAAEMLAAQGISVEVVNLRTLRPLDYGTVIKSVQKTNRLVTVEEGWPQNGIGADISAVVCE-EAFDHLDAPIERVTGADVPMPYALNLERMALPSKEDIVSAVLRTTYRS 984
            +++VREA+NQ +DEEMARDE+VF+MGEEVA YQGAYKVTKGLYQKYG++RVIDTPITEMGFTGLA GA YKDLRP++EFMTFNFS+QAIDQI+NSAAKQ YMSAGD P P+VFRGPNG A+GV AQHSQC+AAW+   P LKVV+PWSSEDAKGL+KSA+RD NPVVFLENELLYGV FPM+DEAQ +DF++P GKAK+E+EG+DV+I TFSK VG SLE AE LA +GISVEV+NLR+LRPLD   VI+SV+KTNRLVTVEEG+P  G+GA+++A++ E +AFD+LDAP+ERVTGADVPMPYA+NLER  +P  EDI  AV R   R+
Sbjct:   34 EMSVREALNQAIDEEMARDEKVFVMGEEVAMYQGAYKVTKGLYQKYGDKRVIDTPITEMGFTGLAIGACYKDLRPILEFMTFNFSMQAIDQIINSAAKQNYMSAGDIPCPIVFRGPNGPAAGVAAQHSQCYAAWFMHCPGLKVVAPWSSEDAKGLMKSAVRDNNPVVFLENELLYGVSFPMSDEAQSDDFLVPFGKAKIEREGSDVTIATFSKPVGLSLEVAEQLAEEGISVEVLNLRSLRPLDRDAVIESVKKTNRLVTVEEGYPHCGVGAELTALIMETDAFDYLDAPVERVTGADVPMPYAINLERATVPQVEDIADAVRRVCNRT 362          
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1487.1 vs. uniprot
Match: A0A6S9FNS6_HETAK (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FNS6_HETAK)

HSP 1 Score: 483 bits (1244), Expect = 4.120e-167
Identity = 242/328 (73.78%), Postives = 282/328 (85.98%), Query Frame = 1
Query:    1 QVAVREAINQGLDEEMARDERVFLMGEEVAQYQGAYKVTKGLYQKYGEQRVIDTPITEMGFTGLATGAAYKDLRPVVEFMTFNFSLQAIDQILNSAAKQLYMSAGDCPVPVVFRGPNGAASGVGAQHSQCFAAWYSSVPALKVVSPWSSEDAKGLIKSAIRDPNPVVFLENELLYGVPFPMTDEAQGEDFVIPIGKAKVEQEGTDVSIVTFSKMVGTSLEAAEMLAAQGISVEVVNLRTLRPLDYGTVIKSVQKTNRLVTVEEGWPQNGIGADISAVVCE-EAFDHLDAPIERVTGADVPMPYALNLERMALPSKEDIVSAVLRTTYR 981
            ++AVREAINQG+DEEM RDE VF MGEEVA YQGAYKVTKGLYQKYGE+RV+DTPITEMGFTGLA GAAY DL+PV+EFMTFNFS+QAID ++NSAAKQ YM+ GD   P+VFRGPNGAA+GVGAQHSQCFAAWYSS P LKVVSPWSSEDAKGLIK+AIRDPNPVV LENELLYGV FPM+D AQ +D+V+PIGKAKVE+EG DVSI+ FS+ V  +LEAA  L  +GIS EV+NLRTLRP+D   +I +V+KTNR+VTVEEGWPQ G+G++I+AV+ E EAFDHLDAP+ERV  AD+PM YALNLER  +P  +DI++A  R  YR
Sbjct:    5 EMAVREAINQGIDEEMERDESVFCMGEEVAMYQGAYKVTKGLYQKYGEKRVVDTPITEMGFTGLAIGAAYADLKPVLEFMTFNFSMQAIDHVVNSAAKQFYMTNGDIACPIVFRGPNGAAAGVGAQHSQCFAAWYSSCPGLKVVSPWSSEDAKGLIKAAIRDPNPVVVLENELLYGVSFPMSDAAQKDDWVVPIGKAKVEREGADVSIIAFSRPVSFALEAAAELEKEGISAEVLNLRTLRPMDRQAIIDTVKKTNRVVTVEEGWPQCGLGSEIAAVIMETEAFDHLDAPVERVAMADIPMAYALNLERATVPQVDDILAAARRACYR 332          
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1487.1 vs. uniprot
Match: A0A7S4E516_9STRA (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E516_9STRA)

HSP 1 Score: 484 bits (1246), Expect = 5.390e-167
Identity = 242/327 (74.01%), Postives = 286/327 (87.46%), Query Frame = 1
Query:    4 VAVREAINQGLDEEMARDERVFLMGEEVAQYQGAYKVTKGLYQKYGEQRVIDTPITEMGFTGLATGAAYKDLRPVVEFMTFNFSLQAIDQILNSAAKQLYMSAGDCPVPVVFRGPNGAASGVGAQHSQCFAAWYSSVPALKVVSPWSSEDAKGLIKSAIRDPNPVVFLENELLYGVPFPMTDEAQGEDFVIPIGKAKVEQEGTDVSIVTFSKMVGTSLEAAEMLAAQGISVEVVNLRTLRPLDYGTVIKSVQKTNRLVTVEEGWPQNGIGADISAVVCE-EAFDHLDAPIERVTGADVPMPYALNLERMALPSKEDIVSAVLRTTYR 981
            V +REA+N  +DEEM  D+ VF+MGEEVAQYQGAYKVTKGL+QKYGE+RVIDTPITEMGF G+ TGAAYKDL+PV EFMTFNF++QAIDQI+NSAAKQ YMS GD  VP+VFRGPNGAA+GV AQHSQCFA+W+S  P LKVV+P+++EDAKGL+K+AIRDPNPVVFLENELLYG  FP++DEAQ +DFV+P+GKA +E+EGTDV++VTFSKMVG  L+AAE LAAQGIS EV+NLR+LRPLD   +I SV+KTNRLV VEEGWPQ GI A+I AVV E +AFD+LDAP+ERVTGADVPM YA+ LE+M+LP  EDIV+AV RTT R
Sbjct:   29 VTIREALNMAMDEEMEADDAVFVMGEEVAQYQGAYKVTKGLFQKYGERRVIDTPITEMGFAGICTGAAYKDLKPVCEFMTFNFAMQAIDQIVNSAAKQAYMSNGDMNVPIVFRGPNGAAAGVAAQHSQCFASWFSQCPGLKVVAPYNAEDAKGLLKAAIRDPNPVVFLENELLYGTSFPLSDEAQSKDFVLPLGKAHIEREGTDVTLVTFSKMVGYCLDAAEELAAQGISAEVLNLRSLRPLDRDAIINSVKKTNRLVAVEEGWPQCGIAAEICAVVMESDAFDYLDAPVERVTGADVPMAYAIPLEKMSLPQVEDIVAAVSRTTER 355          
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1487.1 vs. uniprot
Match: A0A7S3V3V1_9STRA (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V3V1_9STRA)

HSP 1 Score: 479 bits (1234), Expect = 3.560e-165
Identity = 237/328 (72.26%), Postives = 286/328 (87.20%), Query Frame = 1
Query:    4 VAVREAINQGLDEEMARDERVFLMGEEVAQYQGAYKVTKGLYQKYGEQRVIDTPITEMGFTGLATGAAYKDLRPVVEFMTFNFSLQAIDQILNSAAKQLYMSAGDCPVPVVFRGPNGAASGVGAQHSQCFAAWYSSVPALKVVSPWSSEDAKGLIKSAIRDPNPVVFLENELLYGVPFPMTDEAQGEDFVIPIGKAKVEQEGTDVSIVTFSKMVGTSLEAAEMLAAQGISVEVVNLRTLRPLDYGTVIKSVQKTNRLVTVEEGWPQNGIGADISAVVCE-EAFDHLDAPIERVTGADVPMPYALNLERMALPSKEDIVSAVLRTTYRS 984
            + VREAINQG+DEEM RDE VF++GEEVAQYQGAYK+TKGLYQKYG++RVIDTPITEMGF GLA GA+YK+LRP+VEFMT NFS+QAIDQ++NSAAKQ YMSAGD   P+VFRGPNG A+G  AQHSQCFAAWYSS P LKVV+P+SSEDAKGL+K+AIRD NPVV LE+ELLYG  FPM+DEAQ +DFVIP GKAK+E+EGTDV+IV FSKMVG +LE+AE LAA+GIS EVVNL ++RPLD   ++KS +KT R+V++E GWPQ GIG++I+AV+ E +AF++LDAP ERVTGAD+PMPYA  LE+ +LP  ED+V+AV RTTYR+
Sbjct:   31 MTVREAINQGIDEEMERDESVFILGEEVAQYQGAYKITKGLYQKYGDKRVIDTPITEMGFAGLAIGASYKNLRPIVEFMTMNFSMQAIDQVINSAAKQYYMSAGDIACPIVFRGPNGNAAGTAAQHSQCFAAWYSSCPGLKVVAPYSSEDAKGLMKAAIRDNNPVVILEHELLYGTEFPMSDEAQSKDFVIPFGKAKIEREGTDVTIVAFSKMVGLALESAEALAAKGISCEVVNLLSIRPLDRDAIVKSAKKTGRVVSIETGWPQCGIGSEIAAVLMETDAFNYLDAPFERVTGADIPMPYATELEKASLPQVEDVVAAVERTTYRN 358          
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1487.1 vs. uniprot
Match: B8LC08_THAPS (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LC08_THAPS)

HSP 1 Score: 476 bits (1226), Expect = 2.390e-164
Identity = 237/328 (72.26%), Postives = 288/328 (87.80%), Query Frame = 1
Query:    1 QVAVREAINQGLDEEMARDERVFLMGEEVAQYQGAYKVTKGLYQKYGEQRVIDTPITEMGFTGLATGAAYKDLRPVVEFMTFNFSLQAIDQILNSAAKQLYMSAGDCPVPVVFRGPNGAASGVGAQHSQCFAAWYSSVPALKVVSPWSSEDAKGLIKSAIRDPNPVVFLENELLYGVPFPMTDEAQGEDFVIPIGKAKVEQEGTDVSIVTFSKMVGTSLEAAEMLAAQGISVEVVNLRTLRPLDYGTVIKSVQKTNRLVTVEEGWPQNGIGADISAVVCE-EAFDHLDAPIERVTGADVPMPYALNLERMALPSKEDIVSAVLRTTYR 981
            +V VR+AINQ +DEEM RDE+VF++GEEVAQYQGAYKVTKGL+QKYG +RVIDTPITEMGFTG+A GAAYKDLRPVVEFMT+NFS+QAIDQI+NSAAKQ YMSAGD   P+VFRGPNG A+G  AQHSQCFAAWYSSVP LKVV+P++SEDAKGL+K+AIRD NPVV LE+EL+YGV FPM++EAQ  +FVIPIGKAK+E+EGTDV+IVTFSKMVG +LEAAE+LAA G S EV+NLRT+RP+D  T+I SV+KT R+V++E GWPQ GIG++I+A++ E +AF+ LDAP+ER+TGAD+PMPYA +LE  +LP  ED+V+ V R T R
Sbjct:    5 EVTVRDAINQAIDEEMERDEKVFILGEEVAQYQGAYKVTKGLFQKYGSKRVIDTPITEMGFTGMAIGAAYKDLRPVVEFMTWNFSMQAIDQIVNSAAKQYYMSAGDIACPIVFRGPNGNAAGTSAQHSQCFAAWYSSVPGLKVVAPYNSEDAKGLMKAAIRDNNPVVVLEHELMYGVSFPMSEEAQSSEFVIPIGKAKIEREGTDVTIVTFSKMVGLALEAAEVLAAAGTSCEVINLRTIRPIDRETIIDSVKKTGRVVSIETGWPQCGIGSEIAAIMMESDAFNWLDAPMERITGADIPMPYATDLENASLPQVEDVVATVNRLTAR 332          
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1487.1 vs. uniprot
Match: A0A1Z5KRH5_FISSO (Pyruvate dehydrogenase E1 component subunit beta n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRH5_FISSO)

HSP 1 Score: 472 bits (1215), Expect = 2.820e-162
Identity = 234/328 (71.34%), Postives = 286/328 (87.20%), Query Frame = 1
Query:    1 QVAVREAINQGLDEEMARDERVFLMGEEVAQYQGAYKVTKGLYQKYGEQRVIDTPITEMGFTGLATGAAYKDLRPVVEFMTFNFSLQAIDQILNSAAKQLYMSAGDCPVPVVFRGPNGAASGVGAQHSQCFAAWYSSVPALKVVSPWSSEDAKGLIKSAIRDPNPVVFLENELLYGVPFPMTDEAQGEDFVIPIGKAKVEQEGTDVSIVTFSKMVGTSLEAAEMLAAQGISVEVVNLRTLRPLDYGTVIKSVQKTNRLVTVEEGWPQNGIGADISAVVCE-EAFDHLDAPIERVTGADVPMPYALNLERMALPSKEDIVSAVLRTTYR 981
            Q+AVREAIN  +DEEM RDE VF++GEEVAQYQGAYKVTKGLY+KYG++RVIDTPITEMGFTGLA GAAYKDLRP+VEFMT NFS+QA+DQ++NSAAKQ YMSAGD   P+VFRGPNG ++G  AQHSQCF AWYSSVP LKVVSP+SSEDAKGL+K+AIRDPNPVV LE+EL+YGV FPM++EA  +DFVIPIG+AK+E  G+DV++++FSK VG  LEAAE L A+GIS EV+NLR+LRPLD  T+I S +KT R+V VE+GWPQ GI ++I+A++ E +AF++LDAP+ERVTGADVPMPYA++LE  +LP  ED+++AV RTTYR
Sbjct:   31 QMAVREAINAAIDEEMERDESVFILGEEVAQYQGAYKVTKGLYEKYGDKRVIDTPITEMGFTGLAIGAAYKDLRPIVEFMTMNFSMQAMDQVINSAAKQYYMSAGDLACPIVFRGPNGFSAGTAAQHSQCFGAWYSSVPGLKVVSPYSSEDAKGLMKAAIRDPNPVVVLEHELMYGVSFPMSEEAMSKDFVIPIGQAKIEIPGSDVTLISFSKTVGLCLEAAEALKAEGISAEVINLRSLRPLDRKTIIASAKKTGRVVCVEQGWPQCGICSEIAAILMETDAFNYLDAPMERVTGADVPMPYAVDLENASLPQVEDVLAAVRRTTYR 358          
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1487.1 vs. uniprot
Match: F0YEJ7_AURAN (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEJ7_AURAN)

HSP 1 Score: 469 bits (1208), Expect = 1.430e-161
Identity = 238/328 (72.56%), Postives = 279/328 (85.06%), Query Frame = 1
Query:    4 VAVREAINQGLDEEMARDERVFLMGEEVAQYQGAYKVTKGLYQKYGEQRVIDTPITEMGFTGLATGAAYKDLRPVVEFMTFNFSLQAIDQILNSAAKQLYMSAGDCPVPVVFRGPNGAASGVGAQHSQCFAAWYSSVPALKVVSPWSSEDAKGLIKSAIRDPNPVVFLENELLYGVPFPMTDEAQGEDFVIPIGKAKVEQEGTDVSIVTFSKMVGTSLEAAEMLAAQ-GISVEVVNLRTLRPLDYGTVIKSVQKTNRLVTVEEGWPQNGIGADISAVVCE-EAFDHLDAPIERVTGADVPMPYALNLERMALPSKEDIVSAVLRTTYR 981
            V +REA+N  +DEEM  DE +F+MGEEVAQYQGAYKVTKGL+QKYGE+RVIDTPITEMGF G+ATGAAYKDL+P+ EFMTFNF++QAIDQI+NSAAKQ YM+ GD   P+VFRGPNGAA+GV AQHSQCFAAW+S  P LKVV+P+ +EDAKGL+K+AIRDPNPVVFLENELLYG  FP++D AQ +DFV+P+GKA V +EGTDV+ VTFSKMVGT L+AA  L A  GIS EVVNLRTLRPLD   VI SV+KTNRLV VEEGWPQ GI ++I A+V E EAFD+LDAP+ERVTGADVPM YA+ LE+M+LP  +DIV+A LRT  R
Sbjct:    6 VTIREALNMAMDEEMETDESIFVMGEEVAQYQGAYKVTKGLFQKYGERRVIDTPITEMGFAGIATGAAYKDLKPICEFMTFNFAMQAIDQIVNSAAKQAYMTNGDFGCPIVFRGPNGAAAGVAAQHSQCFAAWFSQCPGLKVVAPYDAEDAKGLLKAAIRDPNPVVFLENELLYGASFPLSDAAQSKDFVLPLGKAHVAKEGTDVTFVTFSKMVGTCLDAAAKLEADHGISAEVVNLRTLRPLDRDAVIDSVKKTNRLVAVEEGWPQCGITSEICAIVMESEAFDYLDAPVERVTGADVPMAYAIPLEKMSLPQVDDIVAAALRTNDR 333          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIJ4_ECTSI7.000e-22598.48Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A835YH27_9STRA2.600e-18179.14Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A7S2ME39_9STRA3.760e-17375.76Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A7S2XVY3_9STRA7.570e-17073.86Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A6S9FNS6_HETAK4.120e-16773.78Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A7S4E516_9STRA5.390e-16774.01Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A7S3V3V1_9STRA3.560e-16572.26Pyruvate dehydrogenase E1 component subunit beta n... [more]
B8LC08_THAPS2.390e-16472.26Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A1Z5KRH5_FISSO2.820e-16271.34Pyruvate dehydrogenase E1 component subunit beta n... [more]
F0YEJ7_AURAN1.430e-16172.56Pyruvate dehydrogenase E1 component subunit beta n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1238contigE-siliculosus-1a_F_contig1238:29252..33897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size945
Model size1459
Exons6
Ec32 orthologEc-18_003420.1
Ec32 ortholog descriptionpyruvate dehydrogenase
Hectar predicted targeting categoryother localisation
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03000,ko03019,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelBacillariophyta
COG Functional cat.C
EC1.2.4.1,2.1.1.43
EggNOG OGs2XBMH@2836,COG0022@1,KOG0524@2759
EggNOG free text desc.The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2
GOsGO:0003674,GO:0003824,GO:0004738,GO:0004739,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0005773,GO:0005774,GO:0005967,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006091,GO:0006099,GO:0006101,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009060,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009295,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0015980,GO:0016020,GO:0016491,GO:0016624,GO:0016903,GO:0016999,GO:0017144,GO:0018130,GO:0019362,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0031090,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0042645,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045254,GO:0045333,GO:0046390,GO:0046483,GO:0046496,GO:0048046,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0071616,GO:0071704,GO:0072350,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0098542,GO:0098588,GO:0098798,GO:0098805,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204
KEGG ModuleM00307,M00392
KEGG Pathwayko00010,ko00020,ko00310,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko03018,ko04066,ko04922,ko05230,map00010,map00020,map00310,map00620,map01100,map01110,map01120,map01130,map01200,map03018,map04066,map04922,map05230
KEGG ReactionR00014,R00209,R01699,R03270,R03875,R03938,R04866,R04867
KEGG koko:K00162,ko:K09189,ko:K12599
KEGG rclassRC00003,RC00004,RC00027,RC00060,RC00181,RC00496,RC00627,RC02742,RC02744,RC02882
Preferred namePDHB
Seed eggNOG ortholog35128.Thaps8778
Seed ortholog evalue1.1e-127
Seed ortholog score463.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1238.1487.1prot_E-siliculosus-1a_F_contig1238.1487.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1238 29721..33852 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927758.1252418-UTR-E-siliculosus-1a_F_contig1238:29251..297201622927758.1252418-UTR-E-siliculosus-1a_F_contig1238:29251..29720Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1238 29252..29720 -
1696318668.7383938-UTR-E-siliculosus-1a_F_contig1238:29251..297201696318668.7383938-UTR-E-siliculosus-1a_F_contig1238:29251..29720Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1238 29252..29720 -
1622927758.2131321-UTR-E-siliculosus-1a_F_contig1238:33852..338971622927758.2131321-UTR-E-siliculosus-1a_F_contig1238:33852..33897Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1238 33853..33897 -
1696318668.811369-UTR-E-siliculosus-1a_F_contig1238:33852..338971696318668.811369-UTR-E-siliculosus-1a_F_contig1238:33852..33897Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1238 33853..33897 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927758.1355398-CDS-E-siliculosus-1a_F_contig1238:29720..298341622927758.1355398-CDS-E-siliculosus-1a_F_contig1238:29720..29834Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1238 29721..29834 -
1696318668.7486596-CDS-E-siliculosus-1a_F_contig1238:29720..298341696318668.7486596-CDS-E-siliculosus-1a_F_contig1238:29720..29834Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1238 29721..29834 -
1622927758.1476576-CDS-E-siliculosus-1a_F_contig1238:30523..307001622927758.1476576-CDS-E-siliculosus-1a_F_contig1238:30523..30700Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1238 30524..30700 -
1696318668.756906-CDS-E-siliculosus-1a_F_contig1238:30523..307001696318668.756906-CDS-E-siliculosus-1a_F_contig1238:30523..30700Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1238 30524..30700 -
1622927758.1643095-CDS-E-siliculosus-1a_F_contig1238:30964..310561622927758.1643095-CDS-E-siliculosus-1a_F_contig1238:30964..31056Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1238 30965..31056 -
1696318668.7656953-CDS-E-siliculosus-1a_F_contig1238:30964..310561696318668.7656953-CDS-E-siliculosus-1a_F_contig1238:30964..31056Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1238 30965..31056 -
1622927758.1807666-CDS-E-siliculosus-1a_F_contig1238:31651..318881622927758.1807666-CDS-E-siliculosus-1a_F_contig1238:31651..31888Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1238 31652..31888 -
1696318668.775395-CDS-E-siliculosus-1a_F_contig1238:31651..318881696318668.775395-CDS-E-siliculosus-1a_F_contig1238:31651..31888Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1238 31652..31888 -
1622927758.193513-CDS-E-siliculosus-1a_F_contig1238:32728..329871622927758.193513-CDS-E-siliculosus-1a_F_contig1238:32728..32987Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1238 32729..32987 -
1696318668.784503-CDS-E-siliculosus-1a_F_contig1238:32728..329871696318668.784503-CDS-E-siliculosus-1a_F_contig1238:32728..32987Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1238 32729..32987 -
1622927758.2029154-CDS-E-siliculosus-1a_F_contig1238:33786..338521622927758.2029154-CDS-E-siliculosus-1a_F_contig1238:33786..33852Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1238 33787..33852 -
1696318668.8001049-CDS-E-siliculosus-1a_F_contig1238:33786..338521696318668.8001049-CDS-E-siliculosus-1a_F_contig1238:33786..33852Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1238 33787..33852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1238.1487.1

>prot_E-siliculosus-1a_F_contig1238.1487.1 ID=prot_E-siliculosus-1a_F_contig1238.1487.1|Name=mRNA_E-siliculosus-1a_F_contig1238.1487.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=315bp
MARDERVFLMGEEVAQYQGAYKVTKGLYQKYGEQRVIDTPITEMGFTGLA
TGAAYKDLRPVVEFMTFNFSLQAIDQILNSAAKQLYMSAGDCPVPVVFRG
PNGAASGVGAQHSQCFAAWYSSVPALKVVSPWSSEDAKGLIKSAIRDPNP
VVFLENELLYGVPFPMTDEAQGEDFVIPIGKAKVEQEGTDVSIVTFSKMV
GTSLEAAEMLAAQGISVEVVNLRTLRPLDYGTVIKSVQKTNRLVTVEEGW
PQNGIGADISAVVCEEAFDHLDAPIERVTGADVPMPYALNLERMALPSKE
DIVSAVLRTTYRSK*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1238:29252..33897-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1238.1487.1 ID=mRNA_E-siliculosus-1a_F_contig1238.1487.1|Name=mRNA_E-siliculosus-1a_F_contig1238.1487.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4646bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1238:29252..33897- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGTGGCCGTAAGGGAGGCCATCAACCAGGGGCTTGACGAGGAAATGGC CCGGGACGAGCGGGTGTTTCTCATGGGAGAGGAAGTTGCACAGTACCAAG GGGCGTACAAGGTGGGCGGCTCGTGATGGGAGGAAGGAAATCCCTGCTGA TGAGCACTGCTGTTGTTGTTGTCGTTGCCGTTGTAACATGCCCAATACTT TACGGGGAACGCCGTTCTTGCCTTTGGAACCATTGTGGAGCGTGCCTTCG TCGCGGTGTGGTAGCAAAGAAATATCGCGACAAAACTCGGAAACTATGGA GGTTGAAGCACGGGCGAGAAACCGTCAACATTGTAGCACTTGACTGGCTA GAGCCTTAGCTAGAATTCCACTTCTGACGCGCGGTTGACGCGTGTTCCCC TTTGTTTTTTCTTCCTGGAAGCTGTGCTCCAAGTTCACAGGGCTCGGCTA GAGTTAACGAGGGCAGTGGGCGTTTACCGTATATGACACAAGATAACACA CCCCCTGGCACGATTTTCAAAGCTCGATTACTCGACGACGAAGAGGATAC ATAAACGAAATGATACATTTTCGAAAAGCTCTCAACGAGACGGTTTCAAC GTCGCCGTTTTCGGCGCTGTGAGTCTTCCTGCTGTTGAGAAATCGAGCTT TGAAAATCGGTCAAGGGGGTGTGTTATCTTGTGTCATATACGGTAAACCG CACATTTGTCCTTGAACCAAACTTAATTTTCAAGCACAAGCCAACGACCA GGCATGCCTGAGTGTTTCAATCACAGAAAGACAACACAGGAAGAATTTTT ATGCGTTTGGCTGACAGACTTCTTTTCAAACCCTGCGATTTTTTGCTGCT GCCTCGAATCGTTTCCCCTCCCGAACCACTGCTGCAACACCCTACACCGC ACCCCAAAAGGTCACCAAGGGGCTTTACCAAAAGTACGGGGAGCAGAGGG TGATCGACACCCCCATCACGGAGATGGGATTCACGGGGCTCGCCACGGGG GCGGCCTACAAGGATCTCCGTCCGGTAGTGGAGTTCATGACGTTCAACTT TTCCCTCCAGGCCATCGACCAGATCCTCAACTCTGCGGCAAAGCAGCTGT ACATGTCTGCGGGGGACTGCCCGGTGCCCGTCGTGTTCCGCGGGCCTAAC GGGGCTGCTTCCGGCGTAGGTGCGTTAATCGCGCTTGTGTGTGCTTGATT ATTGGCGTATTTTGGGGTCAAGTCGGTGGGGGTGTACTCATAGCCGTGCA TGCCGTAGTCGTTTGACCATTGGCCTCGCACCCCTACAAAGCCGGGACGG AGTACGCCGGGTTCTCACCGGACCAGGCTCTTACATCACCAAGCGCAAAG CTCCGAGAGGTATTCGGCGAGTGGCCGGGGGGGGGGCCCCCCCCGCCCGC CCCGGCCCACAGCCCCCAAGAGCGCGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTGAGAGGGGAAGGGAATGGG CACGATTAGTGTCGGACTTGAAGGTCGTCCTCACGATTATGGGAGCATAC GCAATTCCAGGCGGCAATTCCAGGCGCCTACGCTTCCGCTGCCACTGCTG CTTGTGCTGCTGTAGACTCTGAGCGACGCCCTTAGTCCGTCCGTGCTCCA AGTTTTGAAGATTCGCAGGCCTTACGCACGCAGTGGAGACGACCTACGGC ACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCC CTCCCCCCCCCCCCCGCCCCCACNNNNNNNNNNCCCCTTAGTCCCGCGCG GCTCCCCGGTTTGGAACTTCGCCGGCCCTCCCCCCCCGGGGGAGACGCCC CCCGGCCCCCCCCCCCCCCCCCCCTCTGGAGGACGCTTACTCAACGGGCT GGTCGCTCCGGCGTGCAGAACACGAACACCCCCCCCCTGCGCACTTTCCA CCACCATCCTAAAACCCCCCCTTTCCCGCCCCCGCTCGACTACCCGTGCC TGCAAACAGGCGCGCAGCACTCTCAGTGTTTCGCGGCGTGGTACTCGTCG GTCCCGGCACTGAAGGTGGTCTCCCCGTGGTCCAGCGAGGACGCCAAGGG CCTCATCAAGTCCGCGATTCGGGACCCCAACCCGGTGGTGTTCCTGGAGA ACGAGTTGCTTTACGGGGTGCCGTTCCCCATGACGGACGAGGCCCAGGGG GAGGACTTCGTGATTCCCATCGGGAAGGCGAAGGTCGAGCAGGAGGGTGA GTTTGTTTGTTTTTTTTGTTCGTAAAGGTTGTTCCACACAACAACCCCGT AGACCGACTCTGCGATGAGCCGATTGTCCCGAAACCGTGAGGATGACGAT GCCGGGAAAATACCAGAAAGCGGTCTTGGGACGAGAGCTTTCCTTGCGCG TGTTGGTTGGTTTTGCGCATGTCTTGAGTTGTGGAGCAATTGAGCTTTGA AAGTAGGCCTATAAGGGGCGTGCGAGCGACTACTCCCACCTTTACGGTAG TATTCTACTCACCTGCGTAGCCGTCGCGTAAACAACTTTGTATACAGTAC GCCTCTGCATGCTCACGTGGCGGAAACAATTCTGCTGTCGCGAAACTCGG TGTACCTTTCTACCGCTTCCGAAGCAAGGGCACGGACACATTCGACAGCA GTGGTCCCCTTGCCAAGGGGAACAAAAGTAGCGTCGTGCGTGGTCCTCTA TTGCTTCATCTGTCCCTCCTGTGTTATTTTGTCTGTCCTTATTTTCTGTT TTGTCTGTCCTCTTGTCACTTCATCTGTCCTTCAGTTATTTCATATGTCC TCTGTTTTGTCTTCTGTCTTTCTCCGTGTGTATCATCGCAGGTACGGACG TGTCGATCGTGACTTTCTCGAAGATGGTGGGCACCTCGCTCGAGGCCGCG GAAATGCTGGCGGCGCAGGGCATTAGCGTCGAGGTAAAGCAGCAGACAAA GGAGGAACATTGTTTTTGTCATTCTTGCAGCCTTACTTTTATCCGCTCGT GCCCGCTTCCTGACTGACGCGGTTAAGTTGTAGGCGGTGATGAGATGGCC ATTCTTTCAAGATGGTCTTGAAACCGGTGACAGCAGCTTTCATCATGACA TTGACGTGAAAAAAACGCAGTAATAGAGTTCGGCAACGCGCTTCCCACCG CCACCTCCAACGCCCTCGTCGTCACCGTTCGCCCCCGTTCCCTGCAGGTA GTCAACCTCCGCACGTTGCGCCCGCTGGACTACGGCACGGTGATCAAGTC GGTCCAGAAGACGAACAGGCTCGTGACGGTGGAGGAGGGCTGGCCGCAGA ACGGCATCGGGGCCGACATCTCGGCCGTTGTTTGCGAGGAGGCGTTTGAC CACCTCGACGCACCCATCGAGCGGGTGAGTGAGGGGGCCCACCCTCCCTC TCTTGTTGCTGTCGTTGGTGTAAAAGACGCTGCTGTTTTGAGAGGTTTGG CGTGACTGCTCTGATCAAGAGGTCACGCGGATTCAAATACTGGAAGTGCT GCCACAAACTGGATTAAGGACCAGATCAGGGGGGAGGACGCGTTGAACAA ACTGGATTAAGCGCCCGAAAAAATGCCGGGGGGGGAGGGGGTAGCAGTGC TTCCAGCATTTGAATCCGCGTGCCCTCTTGCTCTGATGGGTGGGGGGGCA CATGGTTGGGACACACTACAGGGGCTCACCTCGTTTTTTTTTGTTGTCCG CGAGAGACCCCCCTCGGTTCCATACATCCGTTGAGACCTTTGCCACTTTG ATTTTACATCATGTATTTCGCGCGCGAGGTTTTAGGTGTTATGCCGGCGA CTCCGCAGCTTCAAGATGTGCACTTGGCCTTTGTTCGATCCCTGTCTGTG TCTGATCCATCCATCCACTTCGAAATTTGTCTTGGCGTGGCGGGTCTCTC GCCAAAACCACAGCGTTTACCCCCCCGACTCTCACACAAGAATATTGAGC CCTTGGACTTCGATGTGGGCGGGCAGACAGTCGCCCTTGGCCGCATTCCT TCCAACCCCAAGAAATGCCTCCGTCGAACAACCCCTTGTGCGTGTGCGTC TTTTTTTTTTCAGGTGACGGGCGCGGACGTGCCCATGCCGTATGCGCTCA ACCTCGAGCGGATGGCCTTGCCGTCCAAGGAAGACATCGTCTCCGCCGTC CTCCGGACAACATACCGCAGCAAATAAAACAAAAACGTACCATGTTTAGT CTATTGGTGCACTTTTGACCGTTTTTGGTAAACTAGGATAACCCGGCTGA AGTGGGGGCGAGCTGCAGTGTAAGGTAGCGAAGCAGGCCTTTGTGTGACC ATGCGCAGCATGCAATTGTCTTGGGTCGTTGCGCTTTTTATCAGAAGCAG AGGGGGGCGTTAGTTGCCCTATCTGGGAGCGTGGTTGAGACTGGTCGGCT CGTTCTGCGGCGGGGTCTATCGATAGTACCGATGCGTCGAGCTGTATATT CCGTTTTTTCCGAACAATTTTGAAAGCTGAGGACGAGTTGATGCGCCGCG ACAACCAAATAAACTGCTGTTTTTGACGCTGAGGAGAAACAGCAAAAGTC AACGCCGTGGGTTCGCTCGAGAGATGTTCCACGAAGTCCTCATGGATAAA GAGGTAGCGTGAGATGCCGTGCGACGACGTACTCATGAGCCCCGTG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1238:29252..33897-

>mRNA_E-siliculosus-1a_F_contig1238.1487.1 ID=mRNA_E-siliculosus-1a_F_contig1238.1487.1|Name=mRNA_E-siliculosus-1a_F_contig1238.1487.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1890bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1238:29252..33897- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCCCGGGACGAGCGGGTGTTTCTCATGGGAGAGGAAGTTGCACAGTA
CCAAGGGGCGTACAAGATGGCCCGGGACGAGCGGGTGTTTCTCATGGGAG
AGGAAGTTGCACAGTACCAAGGGGCGTACAAGGTCACCAAGGGGCTTTAC
CAAAAGTACGGGGAGCAGAGGGTGATCGACACCCCCATCACGGAGATGGG
ATTCACGGGGCTCGCCACGGGGGCGGCCTACAAGGATCTCCGTCCGGTAG
TGGAGTTCATGACGTTCAACTTTTCCCTCCAGGCCATCGACCAGATCCTC
AACTCTGCGGCAAAGCAGCTGTACATGTCTGCGGGGGACTGCCCGGTGCC
CGTCGTGTTCCGCGGGCCTAACGGGGCTGCTTCCGGCGTAGGTCACCAAG
GGGCTTTACCAAAAGTACGGGGAGCAGAGGGTGATCGACACCCCCATCAC
GGAGATGGGATTCACGGGGCTCGCCACGGGGGCGGCCTACAAGGATCTCC
GTCCGGTAGTGGAGTTCATGACGTTCAACTTTTCCCTCCAGGCCATCGAC
CAGATCCTCAACTCTGCGGCAAAGCAGCTGTACATGTCTGCGGGGGACTG
CCCGGTGCCCGTCGTGTTCCGCGGGCCTAACGGGGCTGCTTCCGGCGTAG
GCGCGCAGCACTCTCAGTGTTTCGCGGCGTGGTACTCGTCGGTCCCGGCA
CTGAAGGTGGTCTCCCCGTGGTCCAGCGAGGACGCCAAGGGCCTCATCAA
GTCCGCGATTCGGGACCCCAACCCGGTGGTGTTCCTGGAGAACGAGTTGC
TTTACGGGGTGCCGTTCCCCATGACGGACGAGGCCCAGGGGGAGGACTTC
GTGATTCCCATCGGGAAGGCGAAGGTCGAGCAGGAGGGCGCGCAGCACTC
TCAGTGTTTCGCGGCGTGGTACTCGTCGGTCCCGGCACTGAAGGTGGTCT
CCCCGTGGTCCAGCGAGGACGCCAAGGGCCTCATCAAGTCCGCGATTCGG
GACCCCAACCCGGTGGTGTTCCTGGAGAACGAGTTGCTTTACGGGGTGCC
GTTCCCCATGACGGACGAGGCCCAGGGGGAGGACTTCGTGATTCCCATCG
GGAAGGCGAAGGTCGAGCAGGAGGGTACGGACGTGTCGATCGTGACTTTC
TCGAAGATGGTGGGCACCTCGCTCGAGGCCGCGGAAATGCTGGCGGCGCA
GGGCATTAGCGTCGAGGTACGGACGTGTCGATCGTGACTTTCTCGAAGAT
GGTGGGCACCTCGCTCGAGGCCGCGGAAATGCTGGCGGCGCAGGGCATTA
GCGTCGAGGTAGTCAACCTCCGCACGTTGCGCCCGCTGGACTACGGCACG
GTGATCAAGTCGGTCCAGAAGACGAACAGGCTCGTGACGGTGGAGGAGGG
CTGGCCGCAGAACGGCATCGGGGCCGACATCTCGGCCGTTGTTTGCGAGG
AGGCGTTTGACCACCTCGACGCACCCATCGAGCGGGTAGTCAACCTCCGC
ACGTTGCGCCCGCTGGACTACGGCACGGTGATCAAGTCGGTCCAGAAGAC
GAACAGGCTCGTGACGGTGGAGGAGGGCTGGCCGCAGAACGGCATCGGGG
CCGACATCTCGGCCGTTGTTTGCGAGGAGGCGTTTGACCACCTCGACGCA
CCCATCGAGCGGGTGACGGGCGCGGACGTGCCCATGCCGTATGCGCTCAA
CCTCGAGCGGATGGCCTTGCCGTCCAAGGAAGACATCGTCTCCGCCGTCC
TCCGGACAACATACCGCAGCAAATAAGTGACGGGCGCGGACGTGCCCATG
CCGTATGCGCTCAACCTCGAGCGGATGGCCTTGCCGTCCAAGGAAGACAT
CGTCTCCGCCGTCCTCCGGACAACATACCGCAGCAAATAA
back to top