mRNA_E-siliculosus-1a_F_contig1237.1475.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1237.1475.1
Unique NamemRNA_E-siliculosus-1a_F_contig1237.1475.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1237.1475.1 vs. uniprot
Match: D8LL38_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL38_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 1.010e-46
Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 1 
Query:    1 AGVARRREQERFARGAAEAQQARLDDLKREVAALRDEHLRAEKSVWSLKSEVSSLSARRDDASRRDRQXXXXXXXXXDXXXXXXXXXXXXXERLRVATVARERLEAEMDELDARACDLRAEVARATQDGA 390
            AGVARRREQERFARGAAEAQQARLDDLKREVAALRDEHLRAEKSVWSLKSEVSSLSARRD+ASRRDR XXXXXXXXX XXXXXXXXXXXXX RLRVATVARERLEAEMDELDARACDLRAEVARATQDGA
Sbjct:  778 AGVARRREQERFARGAAEAQQARLDDLKREVAALRDEHLRAEKSVWSLKSEVSSLSARRDNASRRDRXXXXXXXXXXXXXXXXXXXXXXXXXRLRVATVARERLEAEMDELDARACDLRAEVARATQDGA 907
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1237.1475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LL38_ECTSI1.010e-4696.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1237contigE-siliculosus-1a_F_contig1237:1613..3044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size390
Model size392
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1237.1475.1prot_E-siliculosus-1a_F_contig1237.1475.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1237 1613..3042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927756.7159545-CDS-E-siliculosus-1a_F_contig1237:1612..17021622927756.7159545-CDS-E-siliculosus-1a_F_contig1237:1612..1702Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1237 1613..1702 +
1696318668.106292-CDS-E-siliculosus-1a_F_contig1237:1612..17021696318668.106292-CDS-E-siliculosus-1a_F_contig1237:1612..1702Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1237 1613..1702 +
1622927756.7280238-CDS-E-siliculosus-1a_F_contig1237:2228..24591622927756.7280238-CDS-E-siliculosus-1a_F_contig1237:2228..2459Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1237 2229..2459 +
1696318668.1181502-CDS-E-siliculosus-1a_F_contig1237:2228..24591696318668.1181502-CDS-E-siliculosus-1a_F_contig1237:2228..2459Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1237 2229..2459 +
1622927756.7379763-CDS-E-siliculosus-1a_F_contig1237:2973..30421622927756.7379763-CDS-E-siliculosus-1a_F_contig1237:2973..3042Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1237 2974..3042 +
1696318668.1268005-CDS-E-siliculosus-1a_F_contig1237:2973..30421696318668.1268005-CDS-E-siliculosus-1a_F_contig1237:2973..3042Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1237 2974..3042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1237.1475.1

>prot_E-siliculosus-1a_F_contig1237.1475.1 ID=prot_E-siliculosus-1a_F_contig1237.1475.1|Name=mRNA_E-siliculosus-1a_F_contig1237.1475.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=130bp
AGVARRREQERFARGAAEAQQARLDDLKREVAALRDEHLRAEKSVWSLKS
EVSSLSARRDDASRRDRQREREEEALSDRREAVAAAAEREEERLRVATVA
RERLEAEMDELDARACDLRAEVARATQDGA
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mRNA from alignment at E-siliculosus-1a_F_contig1237:1613..3044+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1237.1475.1 ID=mRNA_E-siliculosus-1a_F_contig1237.1475.1|Name=mRNA_E-siliculosus-1a_F_contig1237.1475.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1432bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1237:1613..3044+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCGGGGTCGCGCGGAGGAGGGAGCAGGAGAGGTTCGCGAGAGGGGCGGC
GGAGGCGCAGCAGGCCCGGCTGGACGACCTGAAGCGCGAGGTGTGTGCGT
GATGAACGGCGTCTCTTCCGAGCGAGCGGGGGCATCGTTGACGTGTTGTT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTGTTGTTGTTGG
GGTGTCGGGAGATTTCTCGTGCCGTCTGCGTGTGTGCTGCACAATACTGC
CACGCACCCTCCCCCGGCGGTAGGATAGCAGGTCAGCTTGTTGTATGCCT
AGAAAAACAGAACACTTCAATCGGTGTGTCGTGGTGTATGGTATTTTTTT
CCTCTGGGGGTGTGACGACGAAGCAGAGGCGTCACAGCGTGAGTGTGTAG
CATATGGTTTGTTGTCTTCAGAGAAAGTGGATGCGCTTTCTCAGGCGTGG
GAGATCGAAGAGCATTCAGCGCTAGGAACGCACGGCATGCCGTGCGGCTT
GCCAAAGCGGCTATTTCCGAAACTCCCCAAGTCTTGACTCGCTCACTCCC
TCGCCCCGCCCCCTCCTTGACGCGGCACCGGTCGAAACCTCACGGATCCG
ACCATATCGGCCACAGGTCGCCGCGCTACGCGACGAGCACCTGCGCGCGG
AGAAGAGCGTCTGGTCCCTCAAGAGCGAGGTGAGCTCCCTGTCCGCCAGG
AGGGACGACGCCTCGAGGCGAGACCGGCAGCGAGAGAGGGAGGAGGAGGC
GCTCTCGGACAGGCGGGAGGCGGTCGCGGCCGCGGCGGAGCGCGAGGAGG
AGCGGCTCCGCGTGGCGACGGTCGCCAGGGAACGGCTGGAGGCGGAGGTT
AGTCGGGTCAGAGACAGGACGACCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCGCCCGGCGCTTCCGCTTGTTCGTGTTTGTGGTGCCTCTC
CTCTTTCTGTCGGGCGCGTCGGGTGNNNNNNNNNNCCACCCCCACTCCCC
CCTCCCCCCCCCCCCCCCCCCCCCCCTCCCCCGCCACACCCCCCCCCCCC
CCCCCCCCCCCCCCGGGTGTTTCGACGGTGTGTCGTCTTTCTTTCTTTTG
TTTTTGGGGACGCCTCTTCAGTACACAATGGCGACAGCGTGGTGGGCACC
TGAGCGCGGGTGCGTCGCGTGCGAGATTTGGACAGCATGTAGACACGTTG
TTTGGGGAGCGCGTGTAAATGTTTTTGTACGTACACTGGAGAGAGGTCTC
TGTGCGCCTTGTGCATCACAATGACGTTCACTTGTCGCAGCCACGAACAA
CCCCTCATTTGTGTATCACCGGCTTCTTTTCCTCCCTTCTCTCGCAAAAA
AAAAAAAAAAGATGGACGAGCTCGACGCTCGCGCCTGCGACCTGCGAGCG
GAGGTCGCCAGAGCCACGCAGGACGGAGCGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1237:1613..3044+

>mRNA_E-siliculosus-1a_F_contig1237.1475.1 ID=mRNA_E-siliculosus-1a_F_contig1237.1475.1|Name=mRNA_E-siliculosus-1a_F_contig1237.1475.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=780bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1237:1613..3044+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCGGGGTCGCGCGGAGGAGGGAGCAGGAGAGGTTCGCGAGAGGGGCGGC
GGAGGCGCAGCAGGCCCGGCTGGACGACCTGAAGCGCGAGGCCGGGGTCG
CGCGGAGGAGGGAGCAGGAGAGGTTCGCGAGAGGGGCGGCGGAGGCGCAG
CAGGCCCGGCTGGACGACCTGAAGCGCGAGGTCGCCGCGCTACGCGACGA
GCACCTGCGCGCGGAGAAGAGCGTCTGGTCCCTCAAGAGCGAGGTGAGCT
CCCTGTCCGCCAGGAGGGACGACGCCTCGAGGCGAGACCGGCAGCGAGAG
AGGGAGGAGGAGGCGCTCTCGGACAGGCGGGAGGCGGTCGCGGCCGCGGC
GGAGCGCGAGGAGGAGCGGCTCCGCGTGGCGACGGTCGCCAGGGAACGGC
TGGAGGCGGAGGTCGCCGCGCTACGCGACGAGCACCTGCGCGCGGAGAAG
AGCGTCTGGTCCCTCAAGAGCGAGGTGAGCTCCCTGTCCGCCAGGAGGGA
CGACGCCTCGAGGCGAGACCGGCAGCGAGAGAGGGAGGAGGAGGCGCTCT
CGGACAGGCGGGAGGCGGTCGCGGCCGCGGCGGAGCGCGAGGAGGAGCGG
CTCCGCGTGGCGACGGTCGCCAGGGAACGGCTGGAGGCGGAGATGGACGA
GCTCGACGCTCGCGCCTGCGACCTGCGAGCGGAGGTCGCCAGAGCCACGC
AGGACGGAGCGATGGACGAGCTCGACGCTCGCGCCTGCGACCTGCGAGCG
GAGGTCGCCAGAGCCACGCAGGACGGAGCG
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