mRNA_E-siliculosus-1a_F_contig1234.1464.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1464.1 vs. uniprot
Match: D7FZK7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZK7_ECTSI) HSP 1 Score: 207 bits (528), Expect = 5.310e-65 Identity = 176/189 (93.12%), Postives = 177/189 (93.65%), Query Frame = 1
Query: 55 MALSLVGDYGGSXXXXXXXXXXXXXXXXXXXXXVSLPSAADLFDSVDTSSASFLSAPATSAADAPLTTPKRKKTDGGGSSNKKNKDSKGGTGSANKGLVPPQMSRPNIVTEDSALWSSDASRKXXXXXXXXXXXXXXXXXXXXXXXXXXXAKELTFKQREKAKRDKGQASRGKSYVEEEKRLLRELGSS 621
MALSLVGDYGGSXXXXXXXXXXXXXXXXXXXXX PSAADLFDSVDTSSASFLSAPATSA DAPLTTPKRKKTDG +KDSKGG GSANKGLVPPQMSRPNIVTEDSALWSSDASRKXXXXXXXXXXXXXXXXXXXXXXXXXXXAKELTFKQREKAKRDKGQASRGKSYVEEEKRLLRELGSS
Sbjct: 1 MALSLVGDYGGSXXXXXXXXXXXXXXXXXXXXXXXXPSAADLFDSVDTSSASFLSAPATSATDAPLTTPKRKKTDGXXXXXXXSKDSKGGAGSANKGLVPPQMSRPNIVTEDSALWSSDASRKXXXXXXXXXXXXXXXXXXXXXXXXXXXAKELTFKQREKAKRDKGQASRGKSYVEEEKRLLRELGSS 189
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1464.1 vs. uniprot
Match: A0A7S2R5U2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5U2_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 1.490e-12 Identity = 68/159 (42.77%), Postives = 83/159 (52.20%), Query Frame = 1
Query: 160 LPSAADLFDSVDTSSASFLS-APATSAADAPLTTPKRKKT----DGGGSSNKKNKDSKGGTGSANKGLVPPQMS-RPNIVTEDSALWSSDASRKXXXXXXXXXXXXXXXXXXXXXXXXXXXAKELTFKQREKAKRDKGQASRGKSYVEEEKRLLRELGS 618
LPSAA+LF SV ASFLS A T A + P K++KT D GG S K + +K + LVPPQ+S RPNI TED + WS+ S ++L+F QREK KRD G SRGKS+VEEEKRLLR+ S
Sbjct: 44 LPSAAELFSSVG--EASFLSVASPTPAPEIPPIQAKKRKTATASDVGGGSGDKPRRTK------SSHLVPPQLSSRPNIATEDVSQWSTSKSSAALKKKDK---------------------EKLSFNQREKRKRDNGMQSRGKSFVEEEKRLLRQAES 173
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1464.1 vs. uniprot
Match: A0A7S2HPJ6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HPJ6_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 8.490e-9 Identity = 60/158 (37.97%), Postives = 78/158 (49.37%), Query Frame = 1
Query: 154 VSLPSAADLFDSVDTSSASFLSA--PATSAADAPLTTPKRKKTDGGGSSNKKNKDS--KGGTGSANKGLVPPQMSRPNIVTEDSALWSSDASRKXXXXXXXXXXXXXXXXXXXXXXXXXXXAKELTFKQREKAKRDKGQASRGKSYVEEEKRLLRELG 615
V+LPSA++LF SV+ ASFL+A P + APL PK+KK KKN D+ + L+PPQ++RPN+ TED WS+ S +F REK KRD G SR K++VEEEKRLLR+ G
Sbjct: 44 VALPSASELFSSVE--GASFLTAASPVPTPEVAPLQ-PKKKK--------KKNTDAFQPASRRKMREQLLPPQLARPNLSTEDYRQWSTTKSADAHNDSKKKDKSSKDAK---------------SFNSREKRKRDLGMQSRHKNFVEEEKRLLRQAG 175
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1464.1 vs. uniprot
Match: A0A6V3BDJ3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3BDJ3_HETAK) HSP 1 Score: 58.2 bits (139), Expect = 6.340e-7 Identity = 37/91 (40.66%), Postives = 48/91 (52.75%), Query Frame = 1
Query: 346 LVPPQMS--RPNIVTEDSALWSSDASRKXXXXXXXXXXXXXXXXXXXXXXXXXXXAKELTFKQREKAKRDKGQASRGKSYVEEEKRLLREL 612
LVPPQM RPN VTE + LW+ + K +F+ +EK KRD+GQASRGK+YVEEEKR+LR++
Sbjct: 138 LVPPQMQLKRPNHVTEATELWTKNKQGSKQQD------------------------KNKSFRHKEKLKRDRGQASRGKNYVEEEKRILRQM 204
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1464.1 vs. uniprot
Match: A0A484NNZ0_9ASTE (Uncharacterized protein n=2 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484NNZ0_9ASTE) HSP 1 Score: 55.1 bits (131), Expect = 5.150e-6 Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1
Query: 508 KELTFKQREKAKRDKGQASRGKSYVEEEKRLLRELG 615
K L+F Q+EK KRD GQASRGKSYVEEEKRLLRE G
Sbjct: 130 KNLSFSQKEKRKRDMGQASRGKSYVEEEKRLLRESG 165
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1464.1 vs. uniprot
Match: A0A444EQ59_ENSVE (Uncharacterized protein n=2 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444EQ59_ENSVE) HSP 1 Score: 53.5 bits (127), Expect = 7.870e-6 Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1
Query: 508 KELTFKQREKAKRDKGQASRGKSYVEEEKRLLRELG 615
K L+F Q+EK KRD GQASRGK+YVEEEKRLLRE G
Sbjct: 81 KNLSFSQKEKRKRDLGQASRGKNYVEEEKRLLRESG 116
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1464.1 vs. uniprot
Match: A0A5A7NWG9_STRAF (UPF0690 protein C1orf52 homolog n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7NWG9_STRAF) HSP 1 Score: 54.7 bits (130), Expect = 8.090e-6 Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1
Query: 505 AKELTFKQREKAKRDKGQASRGKSYVEEEKRLLRELG 615
A L+F+Q+EK KRD GQASRGKSYVEEEKRLLRE G
Sbjct: 138 ANNLSFQQKEKRKRDLGQASRGKSYVEEEKRLLRESG 174
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1464.1 vs. uniprot
Match: UPI001C4AD994 (UPF0690 protein C1orf52 homolog isoform X1 n=4 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4AD994) HSP 1 Score: 54.7 bits (130), Expect = 8.660e-6 Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1
Query: 508 KELTFKQREKAKRDKGQASRGKSYVEEEKRLLRELG 615
K L+F Q+EK KRD GQASRGKSYVEEEKRLLRE G
Sbjct: 144 KNLSFSQKEKRKRDLGQASRGKSYVEEEKRLLRESG 179
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1464.1 vs. uniprot
Match: A0A6P6WL81_COFAR (uncharacterized protein LOC113716146 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6WL81_COFAR) HSP 1 Score: 54.3 bits (129), Expect = 1.220e-5 Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1
Query: 508 KELTFKQREKAKRDKGQASRGKSYVEEEKRLLRELG 615
+EL+F Q+EK KRD GQASRGK+YVEEEKRLLRE G
Sbjct: 146 RELSFSQKEKRKRDLGQASRGKNYVEEEKRLLRESG 181
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1464.1 vs. uniprot
Match: UPI00125D6EC0 (uncharacterized protein LOC116004549 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125D6EC0) HSP 1 Score: 53.9 bits (128), Expect = 1.310e-5 Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1
Query: 508 KELTFKQREKAKRDKGQASRGKSYVEEEKRLLRELG 615
K L+F Q+EK KRD GQASRGK+YVEEEKRLLRE G
Sbjct: 128 KNLSFSQKEKRKRDMGQASRGKNYVEEEKRLLRESG 163 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1234.1464.1 >prot_E-siliculosus-1a_F_contig1234.1464.1 ID=prot_E-siliculosus-1a_F_contig1234.1464.1|Name=mRNA_E-siliculosus-1a_F_contig1234.1464.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=208bp QQYAPVPARPYACFPASGMALSLVGDYGGSGSSSEESEEESEEEQKPKKPback to top mRNA from alignment at E-siliculosus-1a_F_contig1234:22857..24831- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1234.1464.1 ID=mRNA_E-siliculosus-1a_F_contig1234.1464.1|Name=mRNA_E-siliculosus-1a_F_contig1234.1464.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1975bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1234:22857..24831- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1234:22857..24831- >mRNA_E-siliculosus-1a_F_contig1234.1464.1 ID=mRNA_E-siliculosus-1a_F_contig1234.1464.1|Name=mRNA_E-siliculosus-1a_F_contig1234.1464.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1248bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1234:22857..24831- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |