mRNA_E-siliculosus-1a_F_contig1234.1463.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1463.1 vs. uniprot
Match: D7FZK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZK6_ECTSI) HSP 1 Score: 387 bits (993), Expect = 8.290e-136 Identity = 194/198 (97.98%), Postives = 196/198 (98.99%), Query Frame = 1
Query: 1 MRRRRVAAGGVGGLQAAFEVELGRGLEIGSVLVAGADNYGSMTFKAVALVYENGEGGPSRAVCVDKGLDFTIGEMSTGDLGPLSNNRLFRGGDDGGEAAIMIHPHDIMGSRPLGDTGLFVGGFVTALDLVEENKAKPGDFKFFFNHLSWPAGALQEQVDKGLWKVVRLPNDVLLETKRMRDMELWGRIEFALQKKAEQ 594
MRRRRVAAGGVGGLQA+FEVEL RGLEIGSVLVAGADNYGSMTFKAVALVYE+GEGGPSRAVCVDKGLDFTIGEMSTGDLGPLSNNRLFRGGDDGGEAAIMIHPHDIMGSRPLGDTGLFVGGFVTALDLVEENKAKPGDFKFFFNHLSWPAGALQEQV KGLWKVVRLPNDVLLETKRMRDMELWGRIEFALQKKAEQ
Sbjct: 1 MRRRRVAAGGVGGLQASFEVELDRGLEIGSVLVAGADNYGSMTFKAVALVYEHGEGGPSRAVCVDKGLDFTIGEMSTGDLGPLSNNRLFRGGDDGGEAAIMIHPHDIMGSRPLGDTGLFVGGFVTALDLVEENKAKPGDFKFFFNHLSWPAGALQEQVGKGLWKVVRLPNDVLLETKRMRDMELWGRIEFALQKKAEQ 198
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1463.1 vs. uniprot
Match: A0A6H5KYX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYX8_9PHAE) HSP 1 Score: 374 bits (961), Expect = 5.450e-130 Identity = 188/193 (97.41%), Postives = 189/193 (97.93%), Query Frame = 1
Query: 16 VAAGGVGGLQAAFEVELGRGLEIGSVLVAGADNYGSMTFKAVALVYENGEGGPSRAVCVDKGLDFTIGEMSTGDLGPLSNNRLFRGGDDGGEAAIMIHPHDIMGSRPLGDTGLFVGGFVTALDLVEENKAKPGDFKFFFNHLSWPAGALQEQVDKGLWKVVRLPNDVLLETKRMRDMELWGRIEFALQKKAEQ 594
VAAGGVGGLQAAFEVEL RGLEIGSVLVAGADNYGSMTFKAVALVYE+GEGGPSRAVCVDKGLDFTIGEMSTGDLGPLSNNRLFRGGDDGGEAAIMIHPHDIMGSRPLGDTGLFVGGFVTALDLVEENKAKP DFKFFFNHLSWPAGALQEQV KGLWKVVRLP DVLLETKRMRDMELWGRIEFALQKKAEQ
Sbjct: 67 VAAGGVGGLQAAFEVELDRGLEIGSVLVAGADNYGSMTFKAVALVYEHGEGGPSRAVCVDKGLDFTIGEMSTGDLGPLSNNRLFRGGDDGGEAAIMIHPHDIMGSRPLGDTGLFVGGFVTALDLVEENKAKPSDFKFFFNHLSWPAGALQEQVGKGLWKVVRLPKDVLLETKRMRDMELWGRIEFALQKKAEQ 259
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1463.1 vs. uniprot
Match: A0A835YY37_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY37_9STRA) HSP 1 Score: 156 bits (394), Expect = 1.420e-44 Identity = 79/170 (46.47%), Postives = 111/170 (65.29%), Query Frame = 1
Query: 49 AFEVELGRGLEIGSVLVAGADNYGSMTFKAVALVYENGEGGPSRAVCVDKGLDFTIGEMSTGDLGPLSNNRLFRGGDDGGEAAIMIHPH-DIMGSRPLGDTGLFVGGFVTALDLVEENKAKPGDFKFFFNHLSWPAGALQEQVDKGLWKVVRLPNDVLLETKRMRDMELW 555
A V+ GL+ G VLVA ++YG T K+VALV+E S+AV +D+G FTIGEM++ D+GPL+NNRL+RGG+DGG A +MIH D+ G++ +GD+ LFVGG A + V +A+ +FKFFFN + W G L+EQV+KG W + L ++ +D ELW
Sbjct: 42 ALSVQPVEGLDAGVVLVASKNDYGHFTMKSVALVFEYSMEA-SKAVVLDRGSPFTIGEMTSLDMGPLANNRLYRGGEDGGSAVVMIHMRGDLAGAQQIGDSDLFVGGLQAAKEAVASGQAQASEFKFFFNFMRWSPGGLEEQVEKGKWSTIFLDKSAIMAQASNKDQELW 210
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1463.1 vs. uniprot
Match: A0A8J6CH84_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CH84_DIALT) HSP 1 Score: 106 bits (265), Expect = 1.330e-25 Identity = 60/145 (41.38%), Postives = 90/145 (62.07%), Query Frame = 1
Query: 64 LGRGLEIGSVLVAGADNYGSMTFKAVALVYENGEGGPSRAVCVDKGLDFTIGEMSTGDLGPLSNNRLFRGGDDGGEAAIMIHPH-DIMGSRPLGDTGLFVGGFVTALDLVEENKAKPGDFKFFFNHLSWPAGALQEQVDKGLWKV 495
L R L G+VLV+ D Y +AV LV E+ E G SR V +++ FT+GEM++G +G + + RGG+ G + +M+H D+ GS+P+G +GL++GG A LV + A+P +FKFFFN W GAL++Q+ + LW V
Sbjct: 7 LSRSLRAGTVLVSQPDQYDHFFHEAVVLVCEHSEHG-SRGVLLNRETPFTMGEMASG-MGCFDEHSVHRGGNGGADTVLMLHARADVAGSKPIGSSGLYLGGLRHAQQLVADGLAEPSEFKFFFNSEVWAPGALEQQL-RTLWWV 148
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1463.1 vs. uniprot
Match: A0A7S4A408_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A408_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 3.360e-21 Identity = 62/162 (38.27%), Postives = 87/162 (53.70%), Query Frame = 1
Query: 85 GSVLVAGADNYGSMTFKAVALVYENGEGGPSRAVCVDKGLDFTIGEMSTGDL--GPLSNNRLFRGGDDGGEAAIMIHP-HDIMGSRPLGDTGLFVGGFVTALDLVEENKAKPGDFKFFFNHLSWPAGALQEQVDKGLWKVVR-LPNDVLLETKRMRDM-ELW 555
G V++A + Y +A LV E+ E G S V +D TIGE + G L L+ NRLF GG+ GG++A MIH D+ G+R LG + LF+GG A V +P DFKFFFN W G L + + G W+ + +P +V+L+ D +LW
Sbjct: 57 GQVVLAPRNEYNHFLRQAAVLVVEHTERG-SLGVSLDSPTLLTIGEAAKGLLEDSELAENRLFMGGEYGGDSATMIHACEDVAGARRLGGSDLFLGGLADAAKRVNAGINRPEDFKFFFNFCKWAPGELDDAIADGRWRALTGVPREVVLDQDPFADRGKLW 217
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1463.1 vs. uniprot
Match: A0A7S3HFL0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HFL0_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.200e-20 Identity = 47/115 (40.87%), Postives = 70/115 (60.87%), Query Frame = 1
Query: 235 DLGPLSNNRLFRGGDDGGEAAIMIHPHDIMG-SRPLGDTGLFVGGFVTALDLVEENKAKPGDFKFFFNHLSWPAGALQEQVDKGLWKVVRLPNDVLLETKRMRDMELWGRIEFAL 576
+ G N LF+GG++G + A+MIH +D+ G SRPLG+ G+FVGG A + V P DFKF FN++ WP GAL+ +++ G W V ++P D+L++ LW + AL
Sbjct: 7 ETGEFKGNLLFKGGENGQDTAVMIHKYDLGGYSRPLGN-GVFVGGSKQAREKVRTLVTHPRDFKFIFNNIQWPPGALKSEIENGDWDVCQVPVDMLIQQDEEWVDRLWLTLRTAL 120
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1463.1 vs. uniprot
Match: A0A7S1BRH4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BRH4_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 8.120e-17 Identity = 56/149 (37.58%), Postives = 79/149 (53.02%), Query Frame = 1
Query: 76 LEIGSVLVAGADNYGSMTFKAVALVY-----ENGEGGPSRAVCVDKGLDFTIGEM-------STGDLGPLSNNRLFRGGDDGGEAAIMIHP-HDIMGSRPLGDTG-LFVGGFVTALDLVEENKAKPGDFKFFFNHLSWPAGALQEQVDK 480
L G++LVA D Y K+ V+ ENG+G RA VD FT+GEM + LG L +N LFRGG+ G A +MIH + GS P+G+ G ++ GG + + VEE A+ FKF FN++ + L+E +DK
Sbjct: 68 LREGTLLVAPLDEYDHFLMKSAVYVFDIGEDENGDGTVVRAAIVDHPTAFTVGEMMGDGGEAAVSPLGGLGDNALFRGGESGDRAVLMIHSVPGLEGSVPIGEEGGMYQGGVGSGVRAVEEGAAEKSQFKFLFNYMEFGFEELRELMDK 216
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1463.1 vs. uniprot
Match: A0A7S1GIC2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GIC2_CYCTE) HSP 1 Score: 79.7 bits (195), Expect = 2.940e-15 Identity = 46/147 (31.29%), Postives = 78/147 (53.06%), Query Frame = 1
Query: 178 RAVCVDKGLDFTIGEMSTGDL-GPLSNNRLFRGGDDGGEAAIMIHPHDIM------------GSRPLGDTGLFVGGFVTALDLVEENKAKPGDFKFFFNHLSWPAGALQ------EQVDKGLWKVVRLPNDVLLETKRMRDMELWGR 561
R V +D FT+GEM+ G + GPL++N L+RGG+ GGE+A+++H + + G +P+G +G++ GG A+D E ++ GD+KFFFN+ + L ++ D W V +P ++L +LW +
Sbjct: 9 RGVVLDNPTPFTMGEMAPGSIVGPLAHNLLWRGGNMGGESAMLLHCRNELLLEGSSSGSGRSGIKPIGSSGIYEGGLQQAMDSCNEGTSENGDYKFFFNYCEFSRTELDKILSEIDEDDGDAWISVEVPPAIILN-------DLWNK 148
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1463.1 vs. uniprot
Match: B8BQX9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQX9_THAPS) HSP 1 Score: 75.5 bits (184), Expect = 1.740e-13 Identity = 47/167 (28.14%), Postives = 82/167 (49.10%), Query Frame = 1
Query: 85 GSVLVAGADNYGSMTFKAVALVYENGEGGPSRAVCVDKGLDFTI--GEMSTGDLGPLSNNRLFRGGDDGGEAAIMIHP-HDIMGSRPLGDTGLFVGGFVTALDLVEENKAKPGDFKFFFNHLSWPAGALQEQV----DKGLWKVVRLPNDVLLETKRMRDMELWGRI 564
G VLV+ Y KA VY A+ +D D I GEMS +G LS N L+RGG+ G + A+M+H + +G++G++ GG V+A++ + P + KFFFN++ + + + D W + +P++ +L++ R +W ++
Sbjct: 27 GVVLVSPVHEYDHFLMKAAVFVY---------AIGLDDNEDMVIRVGEMSPNVMGNLSQNMLYRGGNSGSDTAMMLHSASSLQSGEMIGNSGIYEGGIVSAMEAADAGIISPNNCKFFFNYMQFRELEIDDMFATVEDGDAWVSLEVPSEYVLDSDLDRGA-MWSKL 183
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1463.1 vs. uniprot
Match: A0A7S0PMA6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0PMA6_9CHLO) HSP 1 Score: 73.2 bits (178), Expect = 6.290e-12 Identity = 54/164 (32.93%), Postives = 85/164 (51.83%), Query Frame = 1
Query: 79 EIGSVLVAGADNYGSMT----FKAVALVYENGEGGPSRAVCVDKGLDFTIGEMSTGDLGPLSNNRLFRGGDDGGEAAIMIHPH-DIMGSRPLGDTGLFVGGFVTALDLVEENKAKPGDFKFFFNHLSWPAGALQEQVDKGLWKVVRLPNDVLLETKRMRDMELW 555
E G +LVA AD+ M+ +AV LV E+ E G S V +++ + +G +S G + N L+ GGD G +H D+ GS + G+++GG+ +A LVEE AKP +FKFF + W G L+ + ++G+W V ++ L+ LW
Sbjct: 155 EKGCLLVA-ADHEFRMSQQYFHQAVILVLEHHENG-SMGVILNRPTQYDMGYVSGDVDGVFAKNALYFGGDVGDGTVSFLHGREDVKGSVEV-LPGMYLGGYDSACALVEEQGAKPDEFKFFARYCGWAPGQLESECERGVWFPVAGAKELALKQVIQLPKPLW 315 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1234.1463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1234.1463.1 >prot_E-siliculosus-1a_F_contig1234.1463.1 ID=prot_E-siliculosus-1a_F_contig1234.1463.1|Name=mRNA_E-siliculosus-1a_F_contig1234.1463.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=199bp MRRRRVAAGGVGGLQAAFEVELGRGLEIGSVLVAGADNYGSMTFKAVALVback to top mRNA from alignment at E-siliculosus-1a_F_contig1234:18907..22056+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1234.1463.1 ID=mRNA_E-siliculosus-1a_F_contig1234.1463.1|Name=mRNA_E-siliculosus-1a_F_contig1234.1463.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3150bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1234:18907..22056+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1234:18907..22056+ >mRNA_E-siliculosus-1a_F_contig1234.1463.1 ID=mRNA_E-siliculosus-1a_F_contig1234.1463.1|Name=mRNA_E-siliculosus-1a_F_contig1234.1463.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1194bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1234:18907..22056+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |