mRNA_E-siliculosus-1a_F_contig12334.1461.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12334.1461.1
Unique NamemRNA_E-siliculosus-1a_F_contig12334.1461.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12334.1461.1 vs. uniprot
Match: A0A7M1RSX7_9CAUD (Uncharacterized protein n=1 Tax=crAssphage cr53_1 TaxID=2772080 RepID=A0A7M1RSX7_9CAUD)

HSP 1 Score: 60.5 bits (145), Expect = 8.890e-9
Identity = 29/77 (37.66%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:  133 FKEQAKRRNIAVSISLDEYSSLLRAACWYCGEFT-----------YEGYSGVDRVQNTGTYERDNVVACCKTCNFMK 330
            +K  AK+RNI  ++S +E+ +++  +C YCGE             +E  +G+DRV  T  Y ++N V CCK CN MK
Sbjct:   84 YKNNAKQRNIEWNLSEEEFKNIITQSCIYCGEAPDITKTSSYRDKHEKITGIDRVDTTKGYFKENCVPCCKMCNIMK 160
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BLAST of mRNA_E-siliculosus-1a_F_contig12334.1461.1 vs. uniprot
Match: A0A6C0JK05_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JK05_9ZZZZ)

HSP 1 Score: 60.8 bits (146), Expect = 1.840e-8
Identity = 33/113 (29.20%), Postives = 60/113 (53.10%), Query Frame = 1 
Query:    1 IVENAPEYNVRRIRALQKKRYRRSPAYQRHLKARKSDVLYRWRVFKEQAKRRNIAVSISLDEYSSLLRAACWYCGEFTYEGYSGVDRVQNTGTYERDNVVACCKTCNFMKGPL 339
            I E+  +Y+      ++K R       Q   + +  ++ Y +  +K  A  + +   IS +EY  L+ + C YCG    +G++G+DR+ ++  Y ++N V+CC  CN+MKG L
Sbjct:  245 IEEDIDKYHSHNAETIKKWRDSHPEKVQEINEQKNKNMNYSYTNYKYSASLKQLMFEISKEEYLLLVVSPCNYCGIIQEKGFNGIDRLNSSIGYVKNNCVSCCAMCNYMKGCL 357
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BLAST of mRNA_E-siliculosus-1a_F_contig12334.1461.1 vs. uniprot
Match: M1I622_PBCVI (Uncharacterized protein n=2 Tax=Chlorovirus TaxID=181083 RepID=M1I622_PBCVI)

HSP 1 Score: 58.5 bits (140), Expect = 1.010e-7
Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 1 
Query:  106 SDVLYRWRVFKEQAKRRNIAVSISLDEYSSLLRAACWYCGEFTYEG-YSGVDRVQNTGTYERDNVVACCKTCNFMKGPL 339
            ++V  R    K+QAK +     +  +E ++L+   C+YCG    +   +G+DR+ NT  Y ++N V CC TCNFMK  L
Sbjct:   99 TNVNRRLSAIKQQAKNKGYVWELMDEEATTLMTTECFYCGYLELDTTVNGIDRMDNTIGYTKENCVGCCGTCNFMKKAL 177
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BLAST of mRNA_E-siliculosus-1a_F_contig12334.1461.1 vs. uniprot
Match: A0A6C0ITL0_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ITL0_9ZZZZ)

HSP 1 Score: 55.1 bits (131), Expect = 1.940e-6
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:  121 RWRVFKEQAKRRNIAVSISLDEYSSLLRAACWYCGEFTYEGY-SGVDRVQNTGTYERDNVVACCKTCNFMKGPL 339
            R++ ++  A ++ I   +S DE  +L   +C+YC      G+ +G+DR  +   Y +DNVV CCK CN++KG L
Sbjct:  274 RFKYYERCAIQKGINFDLSKDECCNLFDKSCYYCKHKDDNGFLNGIDRKSSYLGYIKDNVVTCCKMCNYIKGSL 347
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BLAST of mRNA_E-siliculosus-1a_F_contig12334.1461.1 vs. uniprot
Match: A0A3C2CGI7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Nomurabacteria bacterium TaxID=2052152 RepID=A0A3C2CGI7_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 7.530e-6
Identity = 24/80 (30.00%), Postives = 45/80 (56.25%), Query Frame = 1 
Query:  124 WRVFKEQAKRRNIAVSISLDEYSSLLRAACWYCGEFTYEGY-----------SGVDRVQNTGTYERDNVVACCKTCNFMK 330
            ++ + + AK R ++  ++ +E+ SL+  +C+YC E   E +           +G+DR+ ++  Y  +NVV CCK CN+ K
Sbjct:   83 FKTYADSAKNRCLSFELTKEEFVSLISKSCFYCNEPPSERWHEARGNGHMLSNGLDRIDSSKGYTTNNVVPCCKKCNYAK 162
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BLAST of mRNA_E-siliculosus-1a_F_contig12334.1461.1 vs. uniprot
Match: A0A0F9F6T2_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9F6T2_9ZZZZ)

HSP 1 Score: 52.0 bits (123), Expect = 2.060e-5
Identity = 28/77 (36.36%), Postives = 39/77 (50.65%), Query Frame = 1 
Query:  142 QAKRRNIAVSISLDEYSSLLRAACWYCG---------EFTYEGY--SGVDRVQNTGTYERDNVVACCKTCNFMKGPL 339
            ++K+R I  ++S D +  L    C+YCG         E     Y  +G+DRV N   Y  DNVV CCK CN+ K  +
Sbjct:  204 RSKKRKINFTLSFDTFVELTSQHCFYCGTKPSNITVNEAGNGDYVSNGIDRVDNNKGYIEDNVVPCCKVCNYAKNTM 280
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BLAST of mRNA_E-siliculosus-1a_F_contig12334.1461.1 vs. uniprot
Match: A0A0F9LCY2_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9LCY2_9ZZZZ)

HSP 1 Score: 48.9 bits (115), Expect = 4.210e-5
Identity = 27/78 (34.62%), Postives = 37/78 (47.44%), Query Frame = 1 
Query:  133 FKEQAKRRNIAVSISLDEYSSLLRAACWYCGEFTYEGY-----------SGVDRVQNTGTYERDNVVACCKTCNFMKG 333
            +K  AK R+    ++  ++  L R  C YCG      Y           +G+DRV N+  Y +DN V CCK CN  KG
Sbjct:   10 YKYSAKVRDRVFELTKTQFRILTRQKCVYCGSEPKNVYHRKNTNGPYICNGIDRVDNSVGYTKDNCVPCCKFCNRAKG 87
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12334.1461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7M1RSX7_9CAUD8.890e-937.66Uncharacterized protein n=1 Tax=crAssphage cr53_1 ... [more]
A0A6C0JK05_9ZZZZ1.840e-829.20Uncharacterized protein n=1 Tax=viral metagenome T... [more]
M1I622_PBCVI1.010e-736.71Uncharacterized protein n=2 Tax=Chlorovirus TaxID=... [more]
A0A6C0ITL0_9ZZZZ1.940e-636.49Uncharacterized protein (Fragment) n=1 Tax=viral m... [more]
A0A3C2CGI7_9BACT7.530e-630.00Uncharacterized protein n=1 Tax=Candidatus Nomurab... [more]
A0A0F9F6T2_9ZZZZ2.060e-536.36Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A0F9LCY2_9ZZZZ4.210e-534.62Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12334contigE-siliculosus-1a_F_contig12334:1217..1555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size339
Model size339
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927751.74203-CDS-E-siliculosus-1a_F_contig12334:1216..15551622927751.74203-CDS-E-siliculosus-1a_F_contig12334:1216..1555Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12334 1217..1555 -
1696318666.8704543-CDS-E-siliculosus-1a_F_contig12334:1216..15551696318666.8704543-CDS-E-siliculosus-1a_F_contig12334:1216..1555Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12334 1217..1555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12334.1461.1prot_E-siliculosus-1a_F_contig12334.1461.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12334 1217..1555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12334.1461.1

>prot_E-siliculosus-1a_F_contig12334.1461.1 ID=prot_E-siliculosus-1a_F_contig12334.1461.1|Name=mRNA_E-siliculosus-1a_F_contig12334.1461.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=113bp
IVENAPEYNVRRIRALQKKRYRRSPAYQRHLKARKSDVLYRWRVFKEQAK
RRNIAVSISLDEYSSLLRAACWYCGEFTYEGYSGVDRVQNTGTYERDNVV
ACCKTCNFMKGPL
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mRNA from alignment at E-siliculosus-1a_F_contig12334:1217..1555-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12334.1461.1 ID=mRNA_E-siliculosus-1a_F_contig12334.1461.1|Name=mRNA_E-siliculosus-1a_F_contig12334.1461.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=339bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12334:1217..1555- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATCGTGGAGAATGCTCCAGAGTACAACGTGCGCCGCATCAGAGCCTTGCA
AAAGAAGAGATACCGAAGGTCCCCAGCGTACCAGAGGCACTTGAAAGCCA
GGAAAAGTGATGTGCTGTACAGGTGGCGCGTGTTCAAGGAGCAAGCTAAG
AGGCGAAACATTGCAGTGTCGATTAGCTTAGACGAATACAGTAGCCTTCT
ACGCGCAGCCTGCTGGTACTGCGGGGAATTCACATACGAGGGGTACTCAG
GCGTAGACCGTGTGCAGAACACGGGAACGTACGAAAGAGACAACGTTGTG
GCATGTTGTAAGACTTGCAACTTCATGAAAGGGCCACTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12334:1217..1555-

>mRNA_E-siliculosus-1a_F_contig12334.1461.1 ID=mRNA_E-siliculosus-1a_F_contig12334.1461.1|Name=mRNA_E-siliculosus-1a_F_contig12334.1461.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=678bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12334:1217..1555- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATCGTGGAGAATGCTCCAGAGTACAACGTGCGCCGCATCAGAGCCTTGCA
AAAGAAGAGATACCGAAGGTCCCCAGCGTACCAGAGGCACTTGAAAGCCA
GGAAAAGTGATGTGCTGTACAGGTGGCGCGTGTTCAAGGAGCAAGCTAAG
AGGCGAAACATTGCAGTGTCGATTAGCTTAGACGAATACAGTAGCCTTCT
ACGCGCAGCCTGCTGGTACTGCGGGGAATTCACATACGAGGGGTACTCAG
GCGTAGACCGTGTGCAGAACACGGGAACGTACGAAAGAGACAACGTTGTG
GCATGTTGTAAGACTTGCAACTTCATGAAAGGGCCACTCATCGTGGAGAA
TGCTCCAGAGTACAACGTGCGCCGCATCAGAGCCTTGCAAAAGAAGAGAT
ACCGAAGGTCCCCAGCGTACCAGAGGCACTTGAAAGCCAGGAAAAGTGAT
GTGCTGTACAGGTGGCGCGTGTTCAAGGAGCAAGCTAAGAGGCGAAACAT
TGCAGTGTCGATTAGCTTAGACGAATACAGTAGCCTTCTACGCGCAGCCT
GCTGGTACTGCGGGGAATTCACATACGAGGGGTACTCAGGCGTAGACCGT
GTGCAGAACACGGGAACGTACGAAAGAGACAACGTTGTGGCATGTTGTAA
GACTTGCAACTTCATGAAAGGGCCACTC
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