mRNA_E-siliculosus-1a_F_contig1229.1439.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Match: A0A6H5KQ94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ94_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 6.930e-21 Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1
Query: 1 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 123
LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM
Sbjct: 265 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 305
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Match: D8LAZ6_ECTSI (RNA exonuclease 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAZ6_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 4.260e-19 Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 1
Query: 1 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 123
LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDG+T+
Sbjct: 265 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGDTI 305
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Match: A0A7R9VDL8_9STRA (RNA exonuclease 4 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VDL8_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.420e-9 Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 1
Query: 1 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 123
+T E ++YVALDCEMVG GP G RS LAR CL+DWDG +
Sbjct: 84 VTEEESSRYVALDCEMVGAGPSGERSLLARACLLDWDGRVL 124
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Match: A0A7R9VC72_9STRA (RNA exonuclease 4 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VC72_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.520e-9 Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 1
Query: 1 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 123
+T E ++YVALDCEMVG GP G RS LAR CL+DWDG +
Sbjct: 275 VTEEESSRYVALDCEMVGAGPSGERSLLARACLLDWDGRVL 315
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Match: A0A1Z5JY85_FISSO (RNA exonuclease 4 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JY85_FISSO) HSP 1 Score: 58.2 bits (139), Expect = 7.830e-9 Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1
Query: 13 EKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 123
EK++YVALDCEMVGVG G +SA+AR +VDWDGN +
Sbjct: 75 EKSRYVALDCEMVGVGENGIQSAVARVTIVDWDGNIV 111
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Match: A0A7S2HLT8_9STRA (RNA exonuclease 4 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HLT8_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.330e-8 Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 1
Query: 1 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 123
+T EKA++VALDCEMVGVGP G +SALAR +V+WDG+ +
Sbjct: 151 ITEEEKARFVALDCEMVGVGPHGEQSALARVSIVNWDGDVI 191
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Match: A0A2N5VP15_9BASI (RNA exonuclease 4 n=2 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5VP15_9BASI) HSP 1 Score: 57.4 bits (137), Expect = 1.390e-8 Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1
Query: 1 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 123
LT ++ YVA+DCEMVGVGPGG SALAR +VD+DGN +
Sbjct: 41 LTKDQQKNYVAIDCEMVGVGPGGTTSALARVSVVDFDGNVL 81
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Match: A0A5B0QPG4_PUCGR (3'-5' exonuclease n=1 Tax=Puccinia graminis f. sp. tritici TaxID=56615 RepID=A0A5B0QPG4_PUCGR) HSP 1 Score: 55.1 bits (131), Expect = 1.400e-8 Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1
Query: 1 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 123
LT A++ +YVA+DCEMVGVGP G SALAR +VD+ GN +
Sbjct: 32 LTKAQQKEYVAIDCEMVGVGPNGSVSALARVSIVDFHGNVL 72
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Match: A0A7S3VB57_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VB57_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 3.000e-8 Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 1
Query: 1 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 123
LT E+ +YVALDCE VGVGPGG SALAR LVDW+ +
Sbjct: 81 LTLDEQGRYVALDCEFVGVGPGGYESALARVSLVDWNNAVL 121
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Match: A0A8J9SW06_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SW06_PHATR) HSP 1 Score: 55.5 bits (132), Expect = 3.070e-8 Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1
Query: 13 EKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 123
E+AQYVA+DCEMVGVG G +SALAR LV+W GN +
Sbjct: 2 EQAQYVAMDCEMVGVGALGTKSALARVVLVNWHGNVL 38 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1229.1439.1 >prot_E-siliculosus-1a_F_contig1229.1439.1 ID=prot_E-siliculosus-1a_F_contig1229.1439.1|Name=mRNA_E-siliculosus-1a_F_contig1229.1439.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=42bp LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM*back to top mRNA from alignment at E-siliculosus-1a_F_contig1229:35060..35185+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1229.1439.1 ID=mRNA_E-siliculosus-1a_F_contig1229.1439.1|Name=mRNA_E-siliculosus-1a_F_contig1229.1439.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=126bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1229:35060..35185+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1229:35060..35185+ >mRNA_E-siliculosus-1a_F_contig1229.1439.1 ID=mRNA_E-siliculosus-1a_F_contig1229.1439.1|Name=mRNA_E-siliculosus-1a_F_contig1229.1439.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=252bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1229:35060..35185+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |