mRNA_E-siliculosus-1a_F_contig1229.1439.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1229.1439.1
Unique NamemRNA_E-siliculosus-1a_F_contig1229.1439.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Match: A0A6H5KQ94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ94_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.930e-21
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1
Query:    1 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 123
            LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM
Sbjct:  265 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 305          
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Match: D8LAZ6_ECTSI (RNA exonuclease 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAZ6_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 4.260e-19
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 1
Query:    1 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 123
            LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDG+T+
Sbjct:  265 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGDTI 305          
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Match: A0A7R9VDL8_9STRA (RNA exonuclease 4 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VDL8_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.420e-9
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 1
Query:    1 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 123
            +T  E ++YVALDCEMVG GP G RS LAR CL+DWDG  +
Sbjct:   84 VTEEESSRYVALDCEMVGAGPSGERSLLARACLLDWDGRVL 124          
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Match: A0A7R9VC72_9STRA (RNA exonuclease 4 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VC72_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.520e-9
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 1
Query:    1 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 123
            +T  E ++YVALDCEMVG GP G RS LAR CL+DWDG  +
Sbjct:  275 VTEEESSRYVALDCEMVGAGPSGERSLLARACLLDWDGRVL 315          
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Match: A0A1Z5JY85_FISSO (RNA exonuclease 4 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JY85_FISSO)

HSP 1 Score: 58.2 bits (139), Expect = 7.830e-9
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1
Query:   13 EKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 123
            EK++YVALDCEMVGVG  G +SA+AR  +VDWDGN +
Sbjct:   75 EKSRYVALDCEMVGVGENGIQSAVARVTIVDWDGNIV 111          
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Match: A0A7S2HLT8_9STRA (RNA exonuclease 4 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HLT8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.330e-8
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 1
Query:    1 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 123
            +T  EKA++VALDCEMVGVGP G +SALAR  +V+WDG+ +
Sbjct:  151 ITEEEKARFVALDCEMVGVGPHGEQSALARVSIVNWDGDVI 191          
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Match: A0A2N5VP15_9BASI (RNA exonuclease 4 n=2 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5VP15_9BASI)

HSP 1 Score: 57.4 bits (137), Expect = 1.390e-8
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1
Query:    1 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 123
            LT  ++  YVA+DCEMVGVGPGG  SALAR  +VD+DGN +
Sbjct:   41 LTKDQQKNYVAIDCEMVGVGPGGTTSALARVSVVDFDGNVL 81          
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Match: A0A5B0QPG4_PUCGR (3'-5' exonuclease n=1 Tax=Puccinia graminis f. sp. tritici TaxID=56615 RepID=A0A5B0QPG4_PUCGR)

HSP 1 Score: 55.1 bits (131), Expect = 1.400e-8
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1
Query:    1 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 123
            LT A++ +YVA+DCEMVGVGP G  SALAR  +VD+ GN +
Sbjct:   32 LTKAQQKEYVAIDCEMVGVGPNGSVSALARVSIVDFHGNVL 72          
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Match: A0A7S3VB57_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VB57_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.000e-8
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 1
Query:    1 LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 123
            LT  E+ +YVALDCE VGVGPGG  SALAR  LVDW+   +
Sbjct:   81 LTLDEQGRYVALDCEFVGVGPGGYESALARVSLVDWNNAVL 121          
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Match: A0A8J9SW06_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SW06_PHATR)

HSP 1 Score: 55.5 bits (132), Expect = 3.070e-8
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1
Query:   13 EKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM 123
            E+AQYVA+DCEMVGVG  G +SALAR  LV+W GN +
Sbjct:    2 EQAQYVAMDCEMVGVGALGTKSALARVVLVNWHGNVL 38          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1229.1439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQ94_9PHAE6.930e-21100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LAZ6_ECTSI4.260e-1995.12RNA exonuclease 4 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A7R9VDL8_9STRA1.420e-963.41RNA exonuclease 4 n=1 Tax=Pseudictyota dubia TaxID... [more]
A0A7R9VC72_9STRA1.520e-963.41RNA exonuclease 4 n=1 Tax=Pseudictyota dubia TaxID... [more]
A0A1Z5JY85_FISSO7.830e-967.57RNA exonuclease 4 n=2 Tax=Fistulifera solaris TaxI... [more]
A0A7S2HLT8_9STRA1.330e-863.41RNA exonuclease 4 n=1 Tax=Helicotheca tamesis TaxI... [more]
A0A2N5VP15_9BASI1.390e-863.41RNA exonuclease 4 n=2 Tax=Puccinia coronata f. sp.... [more]
A0A5B0QPG4_PUCGR1.400e-860.983'-5' exonuclease n=1 Tax=Puccinia graminis f. sp.... [more]
A0A7S3VB57_9STRA3.000e-863.41Hypothetical protein (Fragment) n=2 Tax=Chaetocero... [more]
A0A8J9SW06_PHATR3.070e-867.57Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1229contigE-siliculosus-1a_F_contig1229:35060..35185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size126
Model size126
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000,ko01000,ko03009
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.L
EggNOG OGsCOG0847@1,KOG2249@2759
EggNOG free text desc.exonuclease activity
KEGG koko:K18327
Seed eggNOG ortholog2880.D8LAZ6
Seed ortholog evalue4.5e-16
Seed ortholog score89.4
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927748.146467-CDS-E-siliculosus-1a_F_contig1229:35059..351851622927748.146467-CDS-E-siliculosus-1a_F_contig1229:35059..35185Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1229 35060..35185 +
1696318665.1757774-CDS-E-siliculosus-1a_F_contig1229:35059..351851696318665.1757774-CDS-E-siliculosus-1a_F_contig1229:35059..35185Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1229 35060..35185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1229.1439.1prot_E-siliculosus-1a_F_contig1229.1439.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1229 35060..35185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1229.1439.1

>prot_E-siliculosus-1a_F_contig1229.1439.1 ID=prot_E-siliculosus-1a_F_contig1229.1439.1|Name=mRNA_E-siliculosus-1a_F_contig1229.1439.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=42bp
LTAAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGNTM*
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mRNA from alignment at E-siliculosus-1a_F_contig1229:35060..35185+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1229.1439.1 ID=mRNA_E-siliculosus-1a_F_contig1229.1439.1|Name=mRNA_E-siliculosus-1a_F_contig1229.1439.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=126bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1229:35060..35185+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTGACGGCGGCAGAAAAGGCGCAGTACGTGGCGCTGGACTGCGAGATGGT TGGCGTCGGGCCTGGGGGCTGCCGGAGTGCGCTCGCGCGATGTTGCCTCG TGGACTGGGACGGGAACACCATGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1229:35060..35185+

>mRNA_E-siliculosus-1a_F_contig1229.1439.1 ID=mRNA_E-siliculosus-1a_F_contig1229.1439.1|Name=mRNA_E-siliculosus-1a_F_contig1229.1439.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=252bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1229:35060..35185+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTGACGGCGGCAGAAAAGGCGCAGTACGTGGCGCTGGACTGCGAGATGGT
TGGCGTCGGGCCTGGGGGCTGCCGGAGTGCGCTCGCGCGATGTTGCCTCG
TGGACTGGGACGGGAACACCATGTGATTGACGGCGGCAGAAAAGGCGCAG
TACGTGGCGCTGGACTGCGAGATGGTTGGCGTCGGGCCTGGGGGCTGCCG
GAGTGCGCTCGCGCGATGTTGCCTCGTGGACTGGGACGGGAACACCATGT
GA
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