mRNA_E-siliculosus-1a_F_contig12285.1435.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12285.1435.1
Unique NamemRNA_E-siliculosus-1a_F_contig12285.1435.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12285.1435.1 vs. uniprot
Match: D8LF18_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF18_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 6.170e-42
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 2 
Query:    2 RNKVATAKQTMDVNHLQLENLLYERDYLSRETQLCRDFTMTELNKMEEEEEQGFLEDVDTLQTAEEHAGNLAILKEQKEQRI 247
            RNKVATAKQTMDVNHLQLENLLYERDYLSRETQLCRDFTMTELNKMEE+EEQGFLEDVDTLQTAEEHAGNLAILK+QKEQRI
Sbjct:   85 RNKVATAKQTMDVNHLQLENLLYERDYLSRETQLCRDFTMTELNKMEEDEEQGFLEDVDTLQTAEEHAGNLAILKDQKEQRI 166
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BLAST of mRNA_E-siliculosus-1a_F_contig12285.1435.1 vs. uniprot
Match: W7UBK5_9STRA (Tho complex subunit 5 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7UBK5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 6.580e-7
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 2 
Query:    2 RNKVATAKQTMDVNHLQLENLLYERDYLSRETQLCRDFTMTELNKMEEEEEQGFLEDVDT-----LQTAEEHAGNLAILKEQKEQRI 247
            R ++ + K+ +D  HLQL+NL+YE+D+L R  Q  RDF M EL K+EE+E    L  +       L   EEH  +L  L+E+K  RI
Sbjct:  110 RTEMQSKKKEVDDRHLQLQNLMYEKDHLQRTIQSLRDFPMAELTKIEEDEGAPLLPGLTEGGQVRLLPVEEHRLSLERLQEEKGARI 196
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BLAST of mRNA_E-siliculosus-1a_F_contig12285.1435.1 vs. uniprot
Match: A0A835YW19_9STRA (Fms-interacting protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW19_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 8.970e-7
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 2 
Query:   11 VATAKQTMDVNHLQLENLLYERDYLSRETQLCRDFTMTELNKMEEEEEQGFLEDVDTLQTAEEHAGN 211
            V   ++ +D  HLQL+NLLYERD+L RE QLCRD    +L+KM  +E    L  +D   +A+ HA +
Sbjct:   55 VVERRRELDGVHLQLQNLLYERDHLLREIQLCRDHPTPQLDKMARDEGAPILPSMDDAVSADAHANH 121
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BLAST of mRNA_E-siliculosus-1a_F_contig12285.1435.1 vs. uniprot
Match: A0A7S2Y031_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y031_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 4.250e-6
Identity = 24/50 (48.00%), Postives = 36/50 (72.00%), Query Frame = 2 
Query:    2 RNKVATAKQTMDVNHLQLENLLYERDYLSRETQLCRDFTMTELNKMEEEE 151
            R  + +AK+++D   LQL+NLLYE+ +L R+  LCRDF   EL+KM ++E
Sbjct:   64 RKDIVSAKESVDKQQLQLQNLLYEKAHLQRQIMLCRDFATPELDKMAKDE 113
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12285.1435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LF18_ECTSI6.170e-4297.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7UBK5_9STRA6.580e-741.38Tho complex subunit 5 n=3 Tax=Monodopsidaceae TaxI... [more]
A0A835YW19_9STRA8.970e-744.78Fms-interacting protein-domain-containing protein ... [more]
A0A7S2Y031_9STRA4.250e-648.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12285contigE-siliculosus-1a_F_contig12285:614..1332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size249
Model size252
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927746.998741-CDS-E-siliculosus-1a_F_contig12285:614..7461622927746.998741-CDS-E-siliculosus-1a_F_contig12285:614..746Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12285 615..746 -
1696318664.8790956-CDS-E-siliculosus-1a_F_contig12285:614..7461696318664.8790956-CDS-E-siliculosus-1a_F_contig12285:614..746Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12285 615..746 -
1622927747.0246427-CDS-E-siliculosus-1a_F_contig12285:1215..13321622927747.0246427-CDS-E-siliculosus-1a_F_contig12285:1215..1332Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12285 1216..1332 -
1696318664.8927894-CDS-E-siliculosus-1a_F_contig12285:1215..13321696318664.8927894-CDS-E-siliculosus-1a_F_contig12285:1215..1332Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12285 1216..1332 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12285.1435.1prot_E-siliculosus-1a_F_contig12285.1435.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12285 615..1332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12285.1435.1

>prot_E-siliculosus-1a_F_contig12285.1435.1 ID=prot_E-siliculosus-1a_F_contig12285.1435.1|Name=mRNA_E-siliculosus-1a_F_contig12285.1435.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=83bp
QEQGSHREADHGREPPAAGELAVREGLPLPGDAALQRLHYDRAEQDGGRR
GARLLGRCGHPSDSRGARRQPRHTQGAKGAKDK
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mRNA from alignment at E-siliculosus-1a_F_contig12285:614..1332-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12285.1435.1 ID=mRNA_E-siliculosus-1a_F_contig12285.1435.1|Name=mRNA_E-siliculosus-1a_F_contig12285.1435.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=719bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12285:614..1332- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGAACAAGGTAGCCACCGCGAAGCAGACCATGGACGTGAACCACCTGC
AGCTGGAGAACTTGCTGTACGAGAGGGACTACCTCTCCCGGGAGACGCAG
CTCTGCAGAGACTTCACGTGAGATGCTCGGTCCTGCCCGAAAGTTTGCAG
TTCGTACTGTACTGCGGTACTGCTATCTGCATGGTGTCATCATCTTGTAG
TGTACCACGCCATGTTGTAGTACACACGCTTAGACCCGCCGTTGCAATGT
GCATGAAAACGTCAACATGACGGGGCAAGATTTTCGGCCATCAGAGGCAG
CTCTTGAGCAAGGAGGTATTGCTCGAACCCCGTGACTTTCGCAGCCCTAT
CGTATAAATTGGCATCTGCGTTTACCCCAGGGCTTGTTTACTTTTCAACG
CAATGCTTGTCGCTTCCTTCCATTGTTCGCAGTCAAGAACACCGTGAGTG
CAGCCAAGAGAGGGCAGCGGCAAAGGCATTCATCATCCTTCGTGTTTTGA
TGAGCTGCTTGACCTCAAATTTTCGCGATGCTTGATTATCGCCTGGTGTG
AAGTCTTGCCATTCGTACCTGCATTGTCGGCTGCAGTATGACAGAGCTGA
ACAAGATGGAGGAAGAAGAGGAGCAAGGCTTCTTGGAAGATGTGGACACC
CTTCAGACAGCAGAGGAGCACGCAGGCAACCTCGCCATACTCAAGGAGCA
AAAGGAGCAAAGGATAAAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12285:614..1332-

>mRNA_E-siliculosus-1a_F_contig12285.1435.1 ID=mRNA_E-siliculosus-1a_F_contig12285.1435.1|Name=mRNA_E-siliculosus-1a_F_contig12285.1435.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12285:614..1332- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGAACAAGGTAGCCACCGCGAAGCAGACCATGGACGTGAACCACCTGC
AGCTGGAGAACTTGCTGTACGAGAGGGACTACCTCTCCCGGGAGACGCAG
CTCTGCAGAGACTTCACCAGGAACAAGGTAGCCACCGCGAAGCAGACCAT
GGACGTGAACCACCTGCAGCTGGAGAACTTGCTGTACGAGAGGGACTACC
TCTCCCGGGAGACGCAGCTCTGCAGAGACTTCACTATGACAGAGCTGAAC
AAGATGGAGGAAGAAGAGGAGCAAGGCTTCTTGGAAGATGTGGACACCCT
TCAGACAGCAGAGGAGCACGCAGGCAACCTCGCCATACTCAAGGAGCAAA
AGGAGCAAAGGATAAATATGACAGAGCTGAACAAGATGGAGGAAGAAGAG
GAGCAAGGCTTCTTGGAAGATGTGGACACCCTTCAGACAGCAGAGGAGCA
CGCAGGCAACCTCGCCATACTCAAGGAGCAAAAGGAGCAAAGGATAAA
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