|
|
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1228.1434.1 vs. uniprot
Match: A0A6H5K3N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3N5_9PHAE) HSP 1 Score: 729 bits (1883), Expect = 3.380e-251 Identity = 627/800 (78.38%), Postives = 633/800 (79.12%), Query Frame = 2
Query: 305 MATKCSDESVLAGLFLAAYSGNLADVKSTLKNNALSADVADPNKGSTALLWASTGGSLEVVEWLVKQAGANAGHRNKDDRTAFFFACEHCHTPVANFLVGQAGVEVNAKDKPSGHTALHRACIAGQTRDKAQATELISWLLSSANADAKATDLGGRMPGNADLSAEAPSLKPTAQAPAITKSLEDARSGGGVTTPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGAPAPQEAAGPVRLLPKASAFPTSRPATTVASARAAAKKMASPTSPRSPAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDAAKPDVGVAAAVAGPSSPSPATEQPVVPSSSPTATPLPGATAAATAXXXXXXXXKSAXXXXXXXXXXXXSSGGSKPQSPRAGGVLPXXXXXXXXXXXXXXXXXXXAAAKIVATGVKPGLVKQSSYLLRNASASSSSNGGRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGNNAATPAASNGNGVSTXXXXXXXXXXXXXXXXXXAAPSRFQRTVPSTTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFENKARGGTTAAAKPTPVAKPAXXXXXXXAPVLTQGGGAAAATQ--QPQSPKKQTQVRPTSPSKVTPESLLGKGTVMQRKKVYVAAAQKSGNGSPAPLIGKTKKEKDGSFMDKFVSMFTISPQSSPSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPARTETGRLGFFSSNKSFKGLVSSGDNENEKE 2698
MATKCSD+SVLAGLFLAAYSGNLADVKSTLKNNALSADVADPNKGSTALLWASTGGSLEVVEWLVKQAGANAGHRNKDDRTAFFFACEHCHTPVANFLVGQAGVEVNAKDKPSGHTALHRACIAGQTR+KAQATELISWLLSSA ADAKATDLGGRMPGNADLSAEAPSLKPTAQAPAI KSLEDARSGGGVTTPAAA XXXXXXXXXXXXXXXXXXXXXXXX XXXXXX DGA APQE AGP+RLLPK SAFPTSRP TTVASARAAAKKMASPTSPRSPAG XXXXXXXXXXXXXXXXXXXXXXXX A A PSSPS TEQPVVPSSSP A P PGA AA XXXXXXXX X SSG SKPQSPRAGGVL XXXXXXXXX +AAKIVATGVKPGLVKQSSYLLRNASASSSSNGGRSG XXXXXXXXXXXXXXXXXXXXXXXXTGNNAAT AASNGNGVST A+P P+ AA XXXXXXXXXXXXXXXXXXX ENKARGGTTAAAKPTPVAK XXXX APVLTQGG QPQSPKKQTQVRPTSPSKVTPESLLGKGTVM RKKVYVAAAQKSGNGSPAPLIGKTKKEKDGSFMDKFVSMFTISPQSSPSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R ETGRLGFFSS KSFKGLV SGDNENEKE
Sbjct: 1 MATKCSDDSVLAGLFLAAYSGNLADVKSTLKNNALSADVADPNKGSTALLWASTGGSLEVVEWLVKQAGANAGHRNKDDRTAFFFACEHCHTPVANFLVGQAGVEVNAKDKPSGHTALHRACIAGQTREKAQATELISWLLSSAKADAKATDLGGRMPGNADLSAEAPSLKPTAQAPAIAKSLEDARSGGGVTTPAAAAPAPGXXXXXXXXXXXXXXXXXXXXXXXXASVPVAXXXXXX--------------DGARAPQEVAGPMRLLPKPSAFPTSRPTTTVASARAAAKKMASPTSPRSPAGSPRSVXXXXXXXXXXXXXXXXXXXXXXXXAVAEK---------------------AAARPSSPSSPTEQPVVPSSSPKAKPSPGA-AAVXXXXXXXXXXXXXXGLPRAAAAAAASSGASKPQSPRAGGVL-XXXXXXXXXPSSATGSTSSSAAKIVATGVKPGLVKQSSYLLRNASASSSSNGGRSGSSSGPXXXXXXXXXXXXXXXXXXXXXXXXTGNNAATLAASNGNGVSTAAAVT-------------ASPK------PAAAAAPTPAANSATAGXXXXXXXXXXXXXXXXXXXXXENKARGGTTAAAKPTPVAKXXXXXXARSAPVLTQGGXXXXXXXXXQPQSPKKQTQVRPTSPSKVTPESLLGKGTVMHRKKVYVAAAQKSGNGSPAPLIGKTKKEKDGSFMDKFVSMFTISPQSSPSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAETGRLGFFSSQKSFKGLVRSGDNENEKE 744
BLAST of mRNA_E-siliculosus-1a_F_contig1228.1434.1 vs. uniprot
Match: D7FHR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHR2_ECTSI) HSP 1 Score: 539 bits (1388), Expect = 3.070e-178 Identity = 510/745 (68.46%), Postives = 522/745 (70.07%), Query Frame = 2
Query: 530 NKDDRTAFFFACEHCHTPVANFLVGQAGVEVNAKDKPSGHTALHRACIAGQTRDKAQATELISWLLSSANADAKATDLGGRMPGNADLSAEAPSLKPTAQAPAITKSLEDARSGGGVTTPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGAPAPQEAAGPVRLLPKASAFPTSRPATTVASARAAAKKMASPTSPRSPAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDAAKPDVGVAAAVAGPSSPSPATEQPVVPSSSPTATPLPGATAAATAXXXXXXXXKSAXXXXXXXXXXXXSSGGSKPQSPRAGGVLPXXXXXXXXXXXXXXXXXXX------AAAKIVATGVKPGLVKQSSYLLRNASASSSSNGGRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGNNAATPAASNGNGVSTXXXXXXXXXXXXXXXXXXAAPSRFQRTVPSTTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-FENKARGGTTAAAKPTPVAKPAXXXXXXX------------APVLTQGGGAAAATQ---QPQSPKKQTQVRPTSPSKVTPESLLGKGTVMQRKKVYVAAAQKSGNGSPAPLIGKTKKEKDGSFMDKFVSMFTISPQSSPSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPARTETGRLGFFSSNKSFKGLVSSGDNENEKE 2698
+KDDRTAFFFACEHCHTPVANFLVGQAGVEVNAKDKPSGHTALHRACIAGQTR+KAQATELISWLLSSA AD KATDLGGRMPGNADLSAEAPSLKPTAQAPAITKSLEDARSGGG XXXXXXXXXXXXXXXXXXXXXXXXXX EAAGP+RLLP+ASAFPTSRP TTVASARAAAKKMASPTSPRSPAG S A+ + +AV+ P A AA+A SSG SKPQSPRAGGVLP XXXXX AAAKIVATGVKPGLVKQSSYLLRNASASSSSNGGRSG XXXXXXXXXXXXXXXXXXXXXXXXXXXX GN+AATPA SNGNGVST XXXXXXXXXX AAPSRFQRTVP+ XXXXXXXXXXXXXXXXXXXX A FENKARGGTT AAKPTPVAK XXXXXXX APV+ QGG QPQSPKKQ Q RPTSPSKVTPESLLGKGTVMQRKKVYVAAAQKSGNGSPAPLIGKTKKEKDGSFMDKFVSMFTISPQSSPSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PPAR ETGRLGFFSSNKSFKGLVSSGDNENEKE
Sbjct: 25 HKDDRTAFFFACEHCHTPVANFLVGQAGVEVNAKDKPSGHTALHRACIAGQTREKAQATELISWLLSSAKADTKATDLGGRMPGNADLSAEAPSLKPTAQAPAITKSLEDARSGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------EAAGPMRLLPRASAFPTSRPTTTVASARAAAKKMASPTSPRSPAG------------------------------------------SPSGARSVAVLKSAVS------------------------PRAATAASA-----------------------SSGASKPQSPRAGGVLPRTGGTLPAPAATPTXXXXXXXXXXXAAAKIVATGVKPGLVKQSSYLLRNASASSSSNGGRSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNSAATPAVSNGNGVSTAAXXXXXXXXXXATA---AAPSRFQRTVPAXXXXXXXXXXXXXXXXXXXXXXXXSRGPKASALAAAFENKARGGTTTAAKPTPVAKXXXXXXXXXXXXXXXXXXXXXAPVMAQGGXXXXXXXXXXQPQSPKKQAQARPTSPSKVTPESLLGKGTVMQRKKVYVAAAQKSGNGSPAPLIGKTKKEKDGSFMDKFVSMFTISPQSSPSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPARAETGRLGFFSSNKSFKGLVSSGDNENEKE 641
BLAST of mRNA_E-siliculosus-1a_F_contig1228.1434.1 vs. uniprot
Match: D7FHR4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHR4_ECTSI) HSP 1 Score: 151 bits (381), Expect = 1.490e-39 Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 2
Query: 305 MATKCSDESVLAGLFLAAYSGNLADVKSTLKNNALSADVADPNKGSTALLWASTGGSLEVVEWLVKQAGANAGHRNK 535
MATKCSDESVLAGLFLAAYSGNLADVKSTLKNNALSADVADPNKGSTALLWASTGGSLEVVEWLVKQ GANAGHRNK
Sbjct: 1 MATKCSDESVLAGLFLAAYSGNLADVKSTLKNNALSADVADPNKGSTALLWASTGGSLEVVEWLVKQGGANAGHRNK 77
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 2397 |
| Model size | 2722 |
| Exons | 7 |
| Ec32 ortholog | Ec-07_006470.2 |
| Ec32 ortholog description | Ankyrin repeat-containing domain |
| Hectar predicted targeting category | other localisation |
| Seed eggNOG ortholog | 65071.PYU1_T008237 |
| Seed ortholog evalue | 6.5e-07 |
| Seed ortholog score | 63.2 |
| Taxonomic scope | Eukaryota |
| BRITE | ko00000,ko01000,ko04131 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | Z |
| EC | 2.3.1.225 |
| EggNOG OGs | COG5273@1,KOG0509@2759 |
| EggNOG free text desc. | protein-cysteine S-palmitoyltransferase activity |
| KEGG TC | 9.B.37.1,9.B.37.3 |
| KEGG ko | ko:K20032 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927746.2848325-UTR-E-siliculosus-1a_F_contig1228:24492..24796 | 1622927746.2848325-UTR-E-siliculosus-1a_F_contig1228:24492..24796 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1228 24493..24796 + |
| 1696318664.771405-UTR-E-siliculosus-1a_F_contig1228:24492..24796 | 1696318664.771405-UTR-E-siliculosus-1a_F_contig1228:24492..24796 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1228 24493..24796 + |
| 1622927746.7429779-UTR-E-siliculosus-1a_F_contig1228:32574..32595 | 1622927746.7429779-UTR-E-siliculosus-1a_F_contig1228:32574..32595 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1228 32575..32595 + |
| 1696318664.8685205-UTR-E-siliculosus-1a_F_contig1228:32574..32595 | 1696318664.8685205-UTR-E-siliculosus-1a_F_contig1228:32574..32595 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1228 32575..32595 + |
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1228.1434.1 >prot_E-siliculosus-1a_F_contig1228.1434.1 ID=prot_E-siliculosus-1a_F_contig1228.1434.1|Name=mRNA_E-siliculosus-1a_F_contig1228.1434.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=799bp
MATKCSDESVLAGLFLAAYSGNLADVKSTLKNNALSADVADPNKGSTALL
WASTGGSLEVVEWLVKQAGANAGHRNKDDRTAFFFACEHCHTPVANFLVG
QAGVEVNAKDKPSGHTALHRACIAGQTRDKAQATELISWLLSSANADAKA
TDLGGRMPGNADLSAEAPSLKPTAQAPAITKSLEDARSGGGVTTPAAAAA
APAPAPAPGGAPAAETAAAAPATAPETEVKAAVASVPAAAAAAAEAVAAE
APADGAPAPQEAAGPVRLLPKASAFPTSRPATTVASARAAAKKMASPTSP
RSPAGSPRSVAAAASPPARKAAPASPAGVASRPAEKAEKAAAGASSSSSD
AAKPDVGVAAAVAGPSSPSPATEQPVVPSSSPTATPLPGATAAATAVPAA
SPSPKSAGSPRAAPAAAAASSGGSKPQSPRAGGVLPRTGGTLPAPASSAT
GSSSSAAAKIVATGVKPGLVKQSSYLLRNASASSSSNGGRSGSGSGPSSN
ASAAATTIKPGLVKQSSYLLRTGNNAATPAASNGNGVSTAGAAAAASPKP
AAAAATAAAPSRFQRTVPSTTAAATPAANSATAGSAAAVIGASRGPKASA
LAAAFENKARGGTTAAAKPTPVAKPAAKPVAKPAPVLTQGGGAAAATQQP
QSPKKQTQVRPTSPSKVTPESLLGKGTVMQRKKVYVAAAQKSGNGSPAPL
IGKTKKEKDGSFMDKFVSMFTISPQSSPSPSPPRSGSRSPLKSRQRSPMA
AKVANGSSAAAASGAPPARTETGRLGFFSSNKSFKGLVSSGDNENEKE* back to topmRNA from alignment at E-siliculosus-1a_F_contig1228:24493..32595+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1228.1434.1 ID=mRNA_E-siliculosus-1a_F_contig1228.1434.1|Name=mRNA_E-siliculosus-1a_F_contig1228.1434.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8103bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1228:24493..32595+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCGCCCCATGTGTTCCATCAAAAACAGATAGTAGTAGCGAACCTCTGTT
CCCGTCAAGAACGGCAGCCGCTGTCTCCTCTCGGTGCCCTTCTCCGTGCA
AGAAGCCACGCTTGGTCAGGAGACCAAGGAGCTCTTCGTTGGGATAAGCT
TCCGGGAGAGGGGTGCTTGTTTCCGCGGCTCGTGTTGGCCTGCTGACTGC
AGCAAAGTTTTGTGTGTGTCTCCTGCTGGGATAGGGAAAGGCGCGCGGGA
AGAGTTGTTGACGAGCAGTCCTCCTCTCTCTTGTGATAGTGGGTAGAGAA
GAAGATGGCCACGAAGTGCTCCGATGAGTCCGTGTTGGCAGGGTTGTTCC
TGGCGGCCTACAGCGGAAACCTGGCGGACGTGAAGTCCACGCTGAAAAAC
AACGCGCTCTCTGCGGACGTCGCTGACCCAAACAAGGTATGTACATACGG
GATTTGATGATGACATGGTGCAGACAGCAGCAGCAGATGGGAGGGATCCA
ACTTTTTGTTTTCGGCCACAGCAGCAGTTGTTGTCCTTTTCGAATCTCTC
CCCTCCCACACCGCTGCTGTGGCACACCGCCATGCTGTTAACCACGGCAA
GAGCAGCAAGTTGGCCTGTTTCCCTTGAGACTCAGCTAGGGAAGGCTTCT
AGCTCACGGTCTCTCCTGTGGCGTGGCTTGGTTTTTCGATTTCGAATGAT
CGCACACTCCCTGCTGCTGCTGGTGCGGCAAAAATGCAAATGTCTTGATT
TTTGTGTTGTCGTCCTTTCCACCGGGAACGGTCGGCCATGATCGCTTCTT
GCTTGTGCATGTCTCCCGCCCGATCAGACCGCTGTTATTTCTACCCACCA
CCTTTCCTACCTTTACAAGGCAGAAGCCATAACCGGCTCGCTGCGTTGGA
AAGCAGCAGCCGCCTGTACGGCGTTCGATGCAAATGAATGAACACACACA
GGCACCGGGGAACAGATAAGTCGTGGTGAACCACTTTTTTTGTTCGCCGC
CTGCTGTTGACTGTTGGCGACTGCGTTGGGATGTGTGATGCTTTTTCCGA
GAAACCAGGGCTCTACGGCCCTGCTTTGGGCGAGCACCGGCGGAAGTCTG
GAGGTGGTGGAATGGCTAGTGAAGCAAGCGGGGGCGAACGCAGGGCATCG
AAACAAGGTACGAGGAGGAGATGCGACGGCCGCCGGGAGGGAGCAATTTT
GATTTTCAGTTTCAAATATCAACGCGGGTGGAGTGCAAATCTGCTGCCGC
TGCTGCTGCTGCTGCTGCTCTCGAAGAATCAATTTTTCGTTCCTGTATCC
CCTGACAGTAGGCCAGTTGACAGTTGACGCAATCGAAGAGCGTGCGCCTG
GGGCGTGTGTGTATAGGGCAGACGGCTACGTATGCTAAGTAGCTCAGCTT
TTTTCTGGTGACATGAACGGACGCGGGGTGGAAAATGCATGGTGCGTGAG
CAATCACCACCACCACGCCACCTAAAACAGCACGTGCCGCCGCGAACAAA
ATAAATTATGCATAGTAAGTACAATATAAGGCGTCTGTCTCCGTTCGTCT
TGACCACCTTTGTTGGCAGCAAGCGACAGGCGTGGAAATTCTTCTGGTTT
TCCCTTCAAGTTATGATTGTTTGCCAGGTCGAATACGAGTAGTACACCAC
ATCATCCGGGGCACCACGCTTGCCCTCTTTTTCAAAAGTGGTGACCGAGC
ATTTTTTCTTGTAGTCGGGGATCGCACGAACGATGGATGTCTTGTCCATC
TGTCTCGCTGTGTTGTTGTGTGCACTTAGATTTCAAAGTTCCATTTTCCC
GGAACATTTTGAACCAAAACAGACGCGCAACAGCAGTCGTGCGCCCTTCT
AATAGAGCGCCCTTAGGATTCGGGAAATTGATGTTCCAAAGGAGACAAAC
GAAGCGGTTCTCAGTGTAGAAGCGTGTACAAATATGTTTTCGGTGTCGAC
TTCCCTCGCAGACTCAATAAGGAACAGCCTTCGTGAAGGAATTGAAGGTT
CGTAATTCGTGCGAAGTGGTGGTGTTGGTTTTAGGAAGCTTCTCCTTCCT
TGATCGCCCTCTCTCGCTCTCTTTTCTTCGCTGACGTTGTTCACAGCAGC
TAAATCTGTCATTCGTGTTCTGTAACCGTCGATGTACATCAGTCGAGGGG
TGAAGTTGCCCGCACCACCACCTCCGAGTCCGACATGCCTGCGGCACTAT
GAGGCACCGGCACTTGGCCGAGTAGCAAATGAGTGGATTCCATTCCCTAC
AGGTCACACCGCCGCTGAACGATTCTTGTAGCATCGACTTGTTGGAAGCA
TGCACATCGCGAGAGAAGGCTCGACACCCTGCTCGATACAGCAGCAGTTA
TAGTTTTGTTCTCCCAGTAGAACAAACTGAACCCCTACAGTACTGCTGTT
TGTAAACATCTGGTCGGCGCTGCTGCTGCGGCTTCAAGTTCAAAAAACGA
ATTTTCGTGCTCATAAGCTCATCCCATACGCATGGCACTTCGAAGTACAC
ACGGTAGATGCGAACATCTGAACACATCCTAACGGTTTAGGTACTGACAC
GCCAGAGACCCGACCAATGCCTGGGAGGGGTCTCGAAATAGTACCATTTC
TGGGATGTCATGGTACGTTTTCTACACCGATAAAAGAAATCCCACCACTC
GAGAAACCCATCTGTTTCGTGGCCGTGTCACTACTAAGACGAAGATTTCT
ACTTCTGTATACTAAGTCCCTTCGGCAGCTGCGGTGTCATCTCGAACGGG
TAGTCTCTCTGTGACGATATGATACATTCGGAGAGGCAGGCGGTCTGAAA
GGGGCTGTCGAACCCAATGCTCAAATTCGACGATTGAGGACGAGGAACGG
GTGGCGTTTGTACTTGGAACGACCCAAACACACTTTTTGAACTTTTTTGC
CTCATCTGTGATGGAGAAGACTTTGTTTCAAGAGCCTCAGGTGCTCTTCC
GGACGGTATTGCCACACGCCCTGCCGTCCGACATCAAACTCTTGAAAACG
GCGCGCTTCCTAATATACCAAAGCAACCAAAGCCGGTTTTTTAGATCTTG
GTTGCCCCGCACGGGGAACGTGACAGAAGTCCCGAGCTATGCACGCCTCC
TCCGAAAAAGATTGTCAAAAGCATGGTAGTTGCGAAAGCCTCCGCGTCTT
CTCGGCGCAGACACCCTCTCGTGCTGTGGATGGCATCGATAGGGCTTTGG
AAATCGATCCTTTGGATGCGGGTGTGGTGTCTTGCGTGAAATTGTTGAGT
GTCAGCTCCCATGGGGGTCGTGGCAACAGTGCAGCGTGTAGAACCGGTCT
CAACCCGGGGGGATGGGGGGCAGCAAAGGCTGTACGTCCAATATGGCCAA
GCTTCGGCGGTTTTCCGAGCGGAGTTGCCAGAACCGTACCGATGCTGCTG
CCGTGCAACTTTTAGATGCCACCTGCACGGAGTGTGGCGCTTGTTCTCCA
TGTCACAGACGGTGCCGGTGCCTAAAATGGCTGCTCTCAAGAGTATTCCG
TCGCGTCGGTCGTACTTGTATGTCAGATAGTAGTCTGACAGGAATGATGG
TGGGGTGGCAAGCCGGGCACTTGCTTGTGGAATGCACCCCGGGACCAATT
TCCATGCACGACTGCCATGGCCGACTCATGCCAATCTAGATGTCGCCGCG
TGCCACACGACCGCGTGTGTTTTGACGACCACCCCCCACAGCATGTCCTC
CTCGCACCCATGAAGGCTAAACCTTCGCTCGTTTTTTCTTCATTTCTTTC
GCCACTGCCGCCGAACACCTGTGTATGGTTTTTTTATTTGTTGTTGTGAT
CGCCAGGATGACCGCACGGCCTTCTTCTTCGCTTGCGAGCACTGCCACAC
GCCAGTGGCGAACTTTCTGGTCGGGCAGGCCGGCGTGGAGGTCAACGCTA
AGGACAAGCCGTCGGGCCACACGGCCCTTCACCGCGCGTGCATCGCCGGC
CAGACCAGGGATAAGGTGTGCTGTTTTTTTTGCAAGGACATCGGTTGGCC
CCGACACGCATACCCGGGTTTCCATACCGGGAGAACATTGTGGCTTCGTC
GTGTTTCGCTGGGCTTTGGCGAAGTCTCTTTTGTTGTCGGGGAGTGGCTT
GGGTGTTTTTCCTCCTCATCTTCTTGCAGGATCCTGACAGAACTGAACCC
CCCCGGATCGCGACCTGTACCAGCATTTTTGCGATTTTCGCGGCTCTACG
ACTGACGTATTTTCATTGGTCAACGTGGTGGGCGCTACGGCAGCAACAAA
GACACGGGACCGAAAGTAGCCGGCGAGTATCTCTAATTTTTGGCGTCCCC
GCCCCCTCCCCGGCCAACGGATGCACATTTTTTGTCGAACCCTGTCCCAC
CCGCAGGCGCAGGCGACGGAGCTGATCTCGTGGCTGCTGTCGTCGGCCAA
CGCGGACGCCAAGGCCACCGACCTCGGTGGCCGCATGCCGGGAAACGCAG
ACCTTTCGGCGGAGGCTCCCAGCCTGAAGCCTACGGCCCAAGCCCCCGCT
ATCACGAAGTCTCTCGAGGACGCGAGGTCGGGAGGGGGGGTTACGACACC
CGCCGCCGCCGCCGCTGCCCCCGCCCCCGCCCCCGCTCCTGGAGGAGCGC
CGGCGGCCGAGACGGCCGCTGCGGCTCCCGCGACGGCTCCTGAGACGGAG
GTCAAGGCGGCTGTTGCTTCGGTGCCTGCCGCTGCTGCTGCTGCTGCGGA
GGCTGTTGCTGCTGAGGCTCCTGCTGATGGTGCCCCCGCCCCTCAGGAGG
CCGCGGGCCCGGTGCGACTGCTCCCCAAGGCGTCCGCTTTCCCGACCTCT
CGCCCGGCCACGACGGTGGCTTCCGCCCGGGCGGCGGCCAAGAAGATGGC
CTCCCCGACCTCGCCACGCTCGCCTGCAGGTTCCCCTAGGTCTGTGGCGG
CTGCCGCCAGTCCCCCGGCGAGGAAGGCTGCTCCCGCGTCGCCGGCCGGC
GTGGCTTCCCGGCCGGCGGAGAAGGCGGAGAAGGCGGCCGCCGGGGCTTC
GTCTTCGTCATCCGACGCCGCGAAGCCGGACGTGGGCGTCGCCGCCGCCG
TCGCCGGGCCGTCGTCCCCGTCTCCTGCGACGGAGCAGCCGGTCGTGCCG
TCCTCGTCGCCAACGGCGACACCCTTGCCGGGGGCAACGGCGGCGGCGAC
GGCGGTGCCCGCGGCGTCGCCGTCGCCGAAGAGCGCGGGCTCGCCCCGCG
CCGCCCCCGCCGCCGCGGCGGCTTCCTCCGGGGGGTCGAAGCCGCAGTCG
CCGCGTGCTGGAGGCGTTCTTCCCCGGACCGGTGGCACGCTGCCGGCGCC
GGCTAGCTCCGCCACCGGGTCGTCTTCTTCTGCTGCTGCCAAGATTGTGG
CCACGGGGGTGAAGCCGGGGCTGGTGAAACAGTCCTCGTACCTTCTCAGG
AACGCCTCCGCCTCGAGCAGCAGCAACGGCGGGAGAAGCGGGTCGGGCTC
CGGGCCCTCGTCCAACGCCAGCGCCGCGGCCACGACGATCAAGCCCGGCC
TCGTGAAGCAGTCCTCGTACCTCCTGCGCACGGGTAACAACGCCGCGACC
CCCGCAGCGAGCAACGGCAACGGCGTGTCCACCGCCGGCGCCGCCGCCGC
CGCTTCGCCGAAGCCGGCGGCCGCCGCCGCTACCGCCGCCGCTCCGTCGC
GCTTCCAGCGCACAGTCCCGTCTACCACCGCCGCCGCGACCCCGGCGGCG
AACTCGGCCACCGCCGGTAGCGCGGCCGCGGTGATCGGGGCCTCGAGGGG
GCCCAAGGCCTCGGCCCTTGCGGCCGCTTTCGAGAACAAGGCCAGGGGAG
GAACGACGGCAGCGGCGAAGCCGACCCCGGTGGCGAAGCCGGCGGCGAAG
CCGGTGGCGAAGCCAGCACCGGTGCTCACGCAGGGGGGAGGAGCGGCGGC
GGCGACGCAGCAGCCGCAGTCGCCCAAGAAGCAGACGCAGGTACGACCAA
CATCTCCTTCGAAGGTTACCCCGGAGAGCCTTCTGGGGAAGGGCACCGTC
ATGCAGCGGAAAAAGGTGTGTGCTTCTCTGCCCTGCTGCGGGGTGGTGGG
TTTGATATTTTCGTTGCGGGGAAATGTGCTTTTGGTGCCTGGATAGATTT
TTTTGTTTGTTTACCTCGTCACCTGATCTCCCGCTCATCATACGTGTCTG
GCTAGCTGGCCTTTCACACTTGTCCTCTTCTCGAAGCCACGGAAGAAAAC
TTACTATTTCTTTTGTTTTTGCTGGATCGGTGGACGGTTGTCAGGTTTAC
GTGGCGGCGGCCCAAAAGTCAGGAAACGGATCCCCGGCGCCCCTCATCGG
GAAGACCAAGAAGGAAAAGGTGGAGAACTGGTTCCTCAGAAGTTAGTCAC
AACAAAATTACAGCATCCCGCAGAGGCTACTACAACACCCTTACGAGATA
GTTTCTCAAAAGAGAGGATGTGTTGGGAGTCGTTAGCAATGAGGATTTAC
GGACACCTGCTCAATGCTGGTCTTTCTTGTGAGACTGTTTTTCGTGCTTG
CCCTGAGAAACCAGTCATGCCATGTAGCTGGAACAAAATCCGCTCCGTTG
CGGAGTAGATTGAGAGAGATCAGTCTAAATGCAATGAACCGGCATTTCGC
GGCAACCGCTCGGTGTACAACTAGACCTCTTGGCAAGGACAGTAGCAACA
CAACTGACTTGTGGACGGGTGGATAGAATAAGGCACGGCGTTTGTTTGTT
GTTGTGTGTGCTGTGTAAACTCGGACGACCTACGGCGGTACTGCGAGTTC
CGGTAGAGCCCGGAAACCAACCGACAGCCGCGAGAGAGGAAGTCGTAGTC
GTGGTGTGCTCGCTCGCGCCCGGCCCGTTTCACGAAGTCTCGCCGCATTT
TTTGCAATCGCGCCGCGCTGCGCCGTACCGCACCGCACCGCAGGACGGGA
GCTTCATGGACAAGTTCGTGTCGATGTTCACTATTTCCCCGCAGTCCTCG
CCGTCACCATCCCCGCCGAGGTGTGAGCGATGAAAAAAAAAAAAAATCGC
CCAGTCTCGTGTCAATCGGAATCGCGTTGAGTTTTTGAGCGTCCGCGTTG
CCCGTCGAAATCAGATTTGCAGTGGAGAGACGTCAATAGTGCCACTGTTG
ACATCGTGGCGTGGATGAAATATGTTCAAGTTGTCTCGTTCTGTGAATGT
TCCCGGGTGCCCGGTATATCTGTAGTGTGGGTGAGTTTTGCGGGCACATG
CCGGCCGGCCCCACGGAGGGACCGCCACTGAATAGGTATCGGTCGCCATG
GGAACATGAAGCGTTTGTTGGGCATCAGAACCTGTAGGTTCGGAATCAAA
ACCCCTCCAATTGTGTGCAAAGTTTTCCAATCGAACACATGGCGTCAGCA
GGCGTTACCCGTTCCCAATGCTTGAAGAAGGCCGACAATCAAACTATGAA
CCAGGCAGGTTTAGTTCAACAAACGAATCGAAAAAATGTCCATACTATCC
CCGGTGAAAAACAGACTGCGTCAGTTGCATTCGTTGCTTCGCCGGCCTAG
TGTTTCGTTTAGTTTGATTGTATTGTCCAGCTCTTGGTTTTGTGCAGGAC
GTACGTGAGCCTCGAAAGCCTCCGCACCCGTATTGCACGCGGTCACGGCC
GTTTCAGGACGCGTCCGTTATGCTTGTTGGAGTCGAGTTGAATTGGAGTC
ATCGTCGTCGCGAACACCACTGGTAGATCCCCCCATGGGCATACTCGAAA
GTTCTGCGGTAACATCCCACAGACACATGGCCGTGAACATCTTTCCTTTC
CGCTAGCGAACGAAGTCTTCACCATACACCAAAAGAATGGAATCTGGAAG
AGAAGAAGTCGACCTCAAATCGTCTCTCTCGGTGTCTTTCCCCCGTGTGG
TGATGGGGGCGCCGTGCCCTGGATTCGTTCGTCCAGGTCGGGGTCTAGAT
CCCCGCTCAAGTCCCGGCAGCGAAGCCCCATGGCGGCCAAGGTAGCCAAC
GGCTCTTCGGCAGCCGCCGCCAGCGGCGCTCCCCCGGCGCGGACTGAGAC
GGGACGCTTGGGATTCTTCAGCTCTAACAAGTCGTTCAAGGGGCTGGTGA
GCTCGGGGGACAACGAGAACGAGAAGGAGTAGGGCGCCAAAATTCGAGGC
GGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1228:24493..32595+ >mRNA_E-siliculosus-1a_F_contig1228.1434.1 ID=mRNA_E-siliculosus-1a_F_contig1228.1434.1|Name=mRNA_E-siliculosus-1a_F_contig1228.1434.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4794bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1228:24493..32595+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCCACGAAGTGCTCCGATGAGTCCGTGTTGGCAGGGTTGTTCCTGGC
GGCCTACAGCGGAAACCTGGCGGACGTGAAGTCCACGCTGAAAAACAACG
CGCTCTCTGCGGACGTCGCTGACCCAAACAAGATGGCCACGAAGTGCTCC
GATGAGTCCGTGTTGGCAGGGTTGTTCCTGGCGGCCTACAGCGGAAACCT
GGCGGACGTGAAGTCCACGCTGAAAAACAACGCGCTCTCTGCGGACGTCG
CTGACCCAAACAAGGGCTCTACGGCCCTGCTTTGGGCGAGCACCGGCGGA
AGTCTGGAGGTGGTGGAATGGCTAGTGAAGCAAGCGGGGGCGAACGCAGG
GCATCGAAACAAGGGCTCTACGGCCCTGCTTTGGGCGAGCACCGGCGGAA
GTCTGGAGGTGGTGGAATGGCTAGTGAAGCAAGCGGGGGCGAACGCAGGG
CATCGAAACAAGGATGACCGCACGGCCTTCTTCTTCGCTTGCGAGCACTG
CCACACGCCAGTGGCGAACTTTCTGGTCGGGCAGGCCGGCGTGGAGGTCA
ACGCTAAGGACAAGCCGTCGGGCCACACGGCCCTTCACCGCGCGTGCATC
GCCGGCCAGACCAGGGATAAGGATGACCGCACGGCCTTCTTCTTCGCTTG
CGAGCACTGCCACACGCCAGTGGCGAACTTTCTGGTCGGGCAGGCCGGCG
TGGAGGTCAACGCTAAGGACAAGCCGTCGGGCCACACGGCCCTTCACCGC
GCGTGCATCGCCGGCCAGACCAGGGATAAGGCGCAGGCGACGGAGCTGAT
CTCGTGGCTGCTGTCGTCGGCCAACGCGGACGCCAAGGCCACCGACCTCG
GTGGCCGCATGCCGGGAAACGCAGACCTTTCGGCGGAGGCTCCCAGCCTG
AAGCCTACGGCCCAAGCCCCCGCTATCACGAAGTCTCTCGAGGACGCGAG
GTCGGGAGGGGGGGTTACGACACCCGCCGCCGCCGCCGCTGCCCCCGCCC
CCGCCCCCGCTCCTGGAGGAGCGCCGGCGGCCGAGACGGCCGCTGCGGCT
CCCGCGACGGCTCCTGAGACGGAGGTCAAGGCGGCTGTTGCTTCGGTGCC
TGCCGCTGCTGCTGCTGCTGCGGAGGCTGTTGCTGCTGAGGCTCCTGCTG
ATGGTGCCCCCGCCCCTCAGGAGGCCGCGGGCCCGGTGCGACTGCTCCCC
AAGGCGTCCGCTTTCCCGACCTCTCGCCCGGCCACGACGGTGGCTTCCGC
CCGGGCGGCGGCCAAGAAGATGGCCTCCCCGACCTCGCCACGCTCGCCTG
CAGGTTCCCCTAGGTCTGTGGCGGCTGCCGCCAGTCCCCCGGCGAGGAAG
GCTGCTCCCGCGTCGCCGGCCGGCGTGGCTTCCCGGCCGGCGGAGAAGGC
GGAGAAGGCGGCCGCCGGGGCTTCGTCTTCGTCATCCGACGCCGCGAAGC
CGGACGTGGGCGTCGCCGCCGCCGTCGCCGGGCCGTCGTCCCCGTCTCCT
GCGACGGAGCAGCCGGTCGTGCCGTCCTCGTCGCCAACGGCGACACCCTT
GCCGGGGGCAACGGCGGCGGCGACGGCGGTGCCCGCGGCGTCGCCGTCGC
CGAAGAGCGCGGGCTCGCCCCGCGCCGCCCCCGCCGCCGCGGCGGCTTCC
TCCGGGGGGTCGAAGCCGCAGTCGCCGCGTGCTGGAGGCGTTCTTCCCCG
GACCGGTGGCACGCTGCCGGCGCCGGCTAGCTCCGCCACCGGGTCGTCTT
CTTCTGCTGCTGCCAAGATTGTGGCCACGGGGGTGAAGCCGGGGCTGGTG
AAACAGTCCTCGTACCTTCTCAGGAACGCCTCCGCCTCGAGCAGCAGCAA
CGGCGGGAGAAGCGGGTCGGGCTCCGGGCCCTCGTCCAACGCCAGCGCCG
CGGCCACGACGATCAAGCCCGGCCTCGTGAAGCAGTCCTCGTACCTCCTG
CGCACGGGTAACAACGCCGCGACCCCCGCAGCGAGCAACGGCAACGGCGT
GTCCACCGCCGGCGCCGCCGCCGCCGCTTCGCCGAAGCCGGCGGCCGCCG
CCGCTACCGCCGCCGCTCCGTCGCGCTTCCAGCGCACAGTCCCGTCTACC
ACCGCCGCCGCGACCCCGGCGGCGAACTCGGCCACCGCCGGTAGCGCGGC
CGCGGTGATCGGGGCCTCGAGGGGGCCCAAGGCCTCGGCCCTTGCGGCCG
CTTTCGAGAACAAGGCCAGGGGAGGAACGACGGCAGCGGCGAAGCCGACC
CCGGTGGCGAAGCCGGCGGCGAAGCCGGTGGCGAAGCCAGCACCGGTGCT
CACGCAGGGGGGAGGAGCGGCGGCGGCGACGCAGCAGCCGCAGTCGCCCA
AGAAGCAGACGCAGGTACGACCAACATCTCCTTCGAAGGTTACCCCGGAG
AGCCTTCTGGGGAAGGGCACCGTCATGCAGCGGAAAAAGGCGCAGGCGAC
GGAGCTGATCTCGTGGCTGCTGTCGTCGGCCAACGCGGACGCCAAGGCCA
CCGACCTCGGTGGCCGCATGCCGGGAAACGCAGACCTTTCGGCGGAGGCT
CCCAGCCTGAAGCCTACGGCCCAAGCCCCCGCTATCACGAAGTCTCTCGA
GGACGCGAGGTCGGGAGGGGGGGTTACGACACCCGCCGCCGCCGCCGCTG
CCCCCGCCCCCGCCCCCGCTCCTGGAGGAGCGCCGGCGGCCGAGACGGCC
GCTGCGGCTCCCGCGACGGCTCCTGAGACGGAGGTCAAGGCGGCTGTTGC
TTCGGTGCCTGCCGCTGCTGCTGCTGCTGCGGAGGCTGTTGCTGCTGAGG
CTCCTGCTGATGGTGCCCCCGCCCCTCAGGAGGCCGCGGGCCCGGTGCGA
CTGCTCCCCAAGGCGTCCGCTTTCCCGACCTCTCGCCCGGCCACGACGGT
GGCTTCCGCCCGGGCGGCGGCCAAGAAGATGGCCTCCCCGACCTCGCCAC
GCTCGCCTGCAGGTTCCCCTAGGTCTGTGGCGGCTGCCGCCAGTCCCCCG
GCGAGGAAGGCTGCTCCCGCGTCGCCGGCCGGCGTGGCTTCCCGGCCGGC
GGAGAAGGCGGAGAAGGCGGCCGCCGGGGCTTCGTCTTCGTCATCCGACG
CCGCGAAGCCGGACGTGGGCGTCGCCGCCGCCGTCGCCGGGCCGTCGTCC
CCGTCTCCTGCGACGGAGCAGCCGGTCGTGCCGTCCTCGTCGCCAACGGC
GACACCCTTGCCGGGGGCAACGGCGGCGGCGACGGCGGTGCCCGCGGCGT
CGCCGTCGCCGAAGAGCGCGGGCTCGCCCCGCGCCGCCCCCGCCGCCGCG
GCGGCTTCCTCCGGGGGGTCGAAGCCGCAGTCGCCGCGTGCTGGAGGCGT
TCTTCCCCGGACCGGTGGCACGCTGCCGGCGCCGGCTAGCTCCGCCACCG
GGTCGTCTTCTTCTGCTGCTGCCAAGATTGTGGCCACGGGGGTGAAGCCG
GGGCTGGTGAAACAGTCCTCGTACCTTCTCAGGAACGCCTCCGCCTCGAG
CAGCAGCAACGGCGGGAGAAGCGGGTCGGGCTCCGGGCCCTCGTCCAACG
CCAGCGCCGCGGCCACGACGATCAAGCCCGGCCTCGTGAAGCAGTCCTCG
TACCTCCTGCGCACGGGTAACAACGCCGCGACCCCCGCAGCGAGCAACGG
CAACGGCGTGTCCACCGCCGGCGCCGCCGCCGCCGCTTCGCCGAAGCCGG
CGGCCGCCGCCGCTACCGCCGCCGCTCCGTCGCGCTTCCAGCGCACAGTC
CCGTCTACCACCGCCGCCGCGACCCCGGCGGCGAACTCGGCCACCGCCGG
TAGCGCGGCCGCGGTGATCGGGGCCTCGAGGGGGCCCAAGGCCTCGGCCC
TTGCGGCCGCTTTCGAGAACAAGGCCAGGGGAGGAACGACGGCAGCGGCG
AAGCCGACCCCGGTGGCGAAGCCGGCGGCGAAGCCGGTGGCGAAGCCAGC
ACCGGTGCTCACGCAGGGGGGAGGAGCGGCGGCGGCGACGCAGCAGCCGC
AGTCGCCCAAGAAGCAGACGCAGGTACGACCAACATCTCCTTCGAAGGTT
ACCCCGGAGAGCCTTCTGGGGAAGGGCACCGTCATGCAGCGGAAAAAGGT
TTACGTGGCGGCGGCCCAAAAGTCAGGAAACGGATCCCCGGCGCCCCTCA
TCGGGAAGACCAAGAAGGAAAAGGTTTACGTGGCGGCGGCCCAAAAGTCA
GGAAACGGATCCCCGGCGCCCCTCATCGGGAAGACCAAGAAGGAAAAGGA
CGGGAGCTTCATGGACAAGTTCGTGTCGATGTTCACTATTTCCCCGCAGT
CCTCGCCGTCACCATCCCCGCCGAGGACGGGAGCTTCATGGACAAGTTCG
TGTCGATGTTCACTATTTCCCCGCAGTCCTCGCCGTCACCATCCCCGCCG
AGGTCGGGGTCTAGATCCCCGCTCAAGTCCCGGCAGCGAAGCCCCATGGC
GGCCAAGGTAGCCAACGGCTCTTCGGCAGCCGCCGCCAGCGGCGCTCCCC
CGGCGCGGACTGAGACGGGACGCTTGGGATTCTTCAGCTCTAACAAGTCG
TTCAAGGGGCTGGTGAGCTCGGGGGACAACGAGAACGAGAAGGAGTAGGT
CGGGGTCTAGATCCCCGCTCAAGTCCCGGCAGCGAAGCCCCATGGCGGCC
AAGGTAGCCAACGGCTCTTCGGCAGCCGCCGCCAGCGGCGCTCCCCCGGC
GCGGACTGAGACGGGACGCTTGGGATTCTTCAGCTCTAACAAGTCGTTCA
AGGGGCTGGTGAGCTCGGGGGACAACGAGAACGAGAAGGAGTAG back to top
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