mRNA_E-siliculosus-1a_F_contig1226.1427.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1226.1427.1
Unique NamemRNA_E-siliculosus-1a_F_contig1226.1427.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1226.1427.1 vs. uniprot
Match: D7G8P2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P2_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.720e-12
Identity = 76/88 (86.36%), Postives = 79/88 (89.77%), Query Frame = 1 
Query:    1 QTELRDSCRSQTLSADGGGKAMKDKTDTDKENTEAQAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVNEVTTVAAQTTRKS 264
            +TE RDSCRSQTLS DGGGKAMKDKTD DKENT     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VN+VTTVAAQTTRK+
Sbjct:   19 ETEPRDSCRSQTLSVDGGGKAMKDKTDADKENTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNDVTTVAAQTTRKA 106
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1226.1427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8P2_ECTSI1.720e-1286.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1226contigE-siliculosus-1a_F_contig1226:33659..34130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size267
Model size267
Exons2
Ec32 orthologEc-22_002480.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927745.2804205-CDS-E-siliculosus-1a_F_contig1226:33658..338171622927745.2804205-CDS-E-siliculosus-1a_F_contig1226:33658..33817Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1226 33659..33817 -
1696318664.3671527-CDS-E-siliculosus-1a_F_contig1226:33658..338171696318664.3671527-CDS-E-siliculosus-1a_F_contig1226:33658..33817Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1226 33659..33817 -
1622927745.2909634-CDS-E-siliculosus-1a_F_contig1226:34022..341301622927745.2909634-CDS-E-siliculosus-1a_F_contig1226:34022..34130Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1226 34023..34130 -
1696318664.3744934-CDS-E-siliculosus-1a_F_contig1226:34022..341301696318664.3744934-CDS-E-siliculosus-1a_F_contig1226:34022..34130Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1226 34023..34130 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1226.1427.1prot_E-siliculosus-1a_F_contig1226.1427.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1226 33659..34130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1226.1427.1

>prot_E-siliculosus-1a_F_contig1226.1427.1 ID=prot_E-siliculosus-1a_F_contig1226.1427.1|Name=mRNA_E-siliculosus-1a_F_contig1226.1427.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=89bp
QTELRDSCRSQTLSADGGGKAMKDKTDTDKENTEAQAERRDSWRSQASSV
DSTGEAIKDKTDIEEENTDAQVEVNEVTTVAAQTTRKS*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1226:33659..34130-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1226.1427.1 ID=mRNA_E-siliculosus-1a_F_contig1226.1427.1|Name=mRNA_E-siliculosus-1a_F_contig1226.1427.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=472bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1226:33659..34130- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGACTGAACTTCGGGACTCGTGTCGATCCCAGACGTTATCGGCCGACGG
CGGGGGGAAAGCCATGAAGGACAAGACAGACACAGACAAAGAAAACACTG
AAGCTCAGGTTTGTTGTTTCTATCCCAGGGAAATGCAGATTGTTCTCACG
TCATCTATTTGTCTTACCAAAAAAACTACCGTTCCAATCCTTGGGCTCAA
ATCTCTCATCACAACCCCGCCCCTTGTTTATCTTACCAAGACCTACCGTT
CATATCCTTGTGCTCATATCCAATATCCCCGCACAACCCCCAACGTCATT
TTGTCCTTCGCAGGCTGAACGCCGGGACTCGTGGCGATCGCAGGCGTCAT
CGGTCGACAGCACGGGGGAAGCCATCAAGGACAAGACAGACATAGAGGAA
GAAAACACCGACGCTCAGGTCGAGGTAAATGAAGTTACAACCGTAGCCGC
CCAGACCACGAGGAAGTCTTAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1226:33659..34130-

>mRNA_E-siliculosus-1a_F_contig1226.1427.1 ID=mRNA_E-siliculosus-1a_F_contig1226.1427.1|Name=mRNA_E-siliculosus-1a_F_contig1226.1427.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=534bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1226:33659..34130- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGACTGAACTTCGGGACTCGTGTCGATCCCAGACGTTATCGGCCGACGG
CGGGGGGAAAGCCATGAAGGACAAGACAGACACAGACAAAGAAAACACTG
AAGCTCAGCAGACTGAACTTCGGGACTCGTGTCGATCCCAGACGTTATCG
GCCGACGGCGGGGGGAAAGCCATGAAGGACAAGACAGACACAGACAAAGA
AAACACTGAAGCTCAGGCTGAACGCCGGGACTCGTGGCGATCGCAGGCGT
CATCGGTCGACAGCACGGGGGAAGCCATCAAGGACAAGACAGACATAGAG
GAAGAAAACACCGACGCTCAGGTCGAGGTAAATGAAGTTACAACCGTAGC
CGCCCAGACCACGAGGAAGTCTTAGGCTGAACGCCGGGACTCGTGGCGAT
CGCAGGCGTCATCGGTCGACAGCACGGGGGAAGCCATCAAGGACAAGACA
GACATAGAGGAAGAAAACACCGACGCTCAGGTCGAGGTAAATGAAGTTAC
AACCGTAGCCGCCCAGACCACGAGGAAGTCTTAG
back to top